Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0005098

Physical Location & Seq

Genomic Coordinates Forward (+)

43951563 .. 43952377

Gene Structure 815 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0267100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 690 bp

ATGGTAACAGGTACATCTTCCTCTTCAGTGTTTCTCCGAGCTCGGTTCTTAAAAGTGAATCTAGACATTTATTCTTATTATCAAAGATCGTCTGTCTGGACTGGTCTGCGGCAATTATGGTCTGTATTATTATCAAACTTGAGATGGCAGGTAGGTAACGGCATGAATATATATTTTTGGAAGGACAATTGGCTCGGTAGCTCATTAGCAGTCAGATTGAACATTGATCCTTCAGTTCTGCCGTTCCTTCACGATCGTGTTGGTGATTATATTGTGCAGAATCAATGGGACCTTCCATTAGAGTTTCTTGAGAACTTTCCAGAAGCTTCTAATGATATTATGAAGATTGACATTCCAGAGGCTGGTTTGGAGGATACTGTGATCTGGCCTACTACTACGTCTGGTTCCTTGACTGCAGCAGAGGCTTATACTTTTCTTTCGGACCCGAATGCTCCTCTTGAGTGGGGAAAGGCTATTTGGCACAAAGCATTGCAACCCCGAAAAAGCATTGTTTGTTGGAAAGTTTTCCATCACAAAATCTTGGTTGATGAAATTATGCAGCGCAGAGCGCCCAGCGCTACTTTCTTTACAAGGGCTCTTCTCTCCCGTTTTATTAAACCCGATTCCGTTTGCTTCAAAACTGTTATGGAGGTTAGCTGTTTGCAATCTGTTTTGGTGTATATGGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0001101 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0008150 GO:0008509 GO:0009705 GO:0009987 GO:0010035 GO:0010167 GO:0015075 GO:0015103 GO:0015112 GO:0015318 GO:0015698 GO:0015706 GO:0016020 GO:0022857 GO:0031090 GO:0034220 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0070887 GO:0071229 GO:0071241 GO:0071249 GO:0071705 GO:0071944 GO:0098588 GO:0098656 GO:0098805 GO:1901698 GO:1901699 GO:1901700 GO:1901701 GO:1902170

KEGG Pathways

Metabolic & Signaling

ko00910 map00910

Pfam Domains

Protein Families

MFS_1

Protein Analysis

229

Amino Acids

26.35

Weight (kDa)

6.9

Isoelectric Point (pI)

43.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RVT	PF13966	139 - 191	2.3e-06	zinc-binding in reverse transcriptase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0005098)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12940
fragaria_vesca	FvH4_4g25770 FvH4_4g25780
malus_domestica	MD13G1096700.v1.1
prunus_persica	Prupe.1G249000_v2.0.a1
pyrus_communis	pycom13g08430
rosa_chinensis	RchiOBHm_Chr2g0144671 RchiOBHm_Chr4g0433231 RchiOBHm_Chr4g0433241
rosa_laevigata	RLG00000006772 RLG00000006773 RLG00000020099
rosa_multiflora	Rmu_sc0000957.1_g000005 Rmu_sc0001623.1_g000001 Rmu_ssc0000295.1_g000002
rosa_roxburghii	Rroxscaffold_5G00374770 Rroxscaffold_5G00374790
rosa_rugosa	Rorug02G0388600 Rorug04G0267000 Rorug04G0267100
rosa_samantha	Rh2BG450900 Rh2DG460900 Rh4AG321600 Rh4AG321800 Rh4BG328700 Rh4CG344100 Rh4DG325400 Rh4DG325900
rosa_wichuraiana	Rw2G036030 Rw4G027850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	139
AccB7I	CCANNNNNTGG	1 cut(s)	362
AciI	CCGC	1 cut(s)	109
AclWI	GGATC	1 cut(s)	221
AcuI	CTGAAG	2 cut(s)	9, 216
AfaI	GTAC	1 cut(s)	13
AfeI	AGCGCT	1 cut(s)	577
AfiI	CCNNNNNNNGG	1 cut(s)	362
AgsI	TTSAA	2 cut(s)	220, 637
AjuI	GAANNNNNNNTTGG	2 cut(s)	460, 492
AleI	CACNNNNGTG	1 cut(s)	255
AluBI	AGCT	4 cut(s)	41, 201, 326, 657
AluI	AGCT	4 cut(s)	41, 201, 326, 657
Alw21I	GWGCWC	1 cut(s)	43
AlwI	GGATC	1 cut(s)	221
AlwNI	CAGNNNCTG	1 cut(s)	362
Aor51HI	AGCGCT	1 cut(s)	577
AoxI	GGCC	1 cut(s)	386
ApeKI	GCWGC	2 cut(s)	416, 559
Asp700I	GAANNNNTTC	1 cut(s)	524
AspLEI	GCGC	3 cut(s)	564, 571, 578
AspS9I	GGNCC	2 cut(s)	289, 442
AsuHPI	GGTGA	1 cut(s)	275
AvaII	GGWCC	2 cut(s)	289, 442
BanII	GRGCYC	2 cut(s)	43, 598
Bbv12I	GWGCWC	1 cut(s)	43
BbvI	GCAGC	2 cut(s)	428, 571
BccI	CCATC	2 cut(s)	138, 537
BceAI	ACGGC	2 cut(s)	175, 226
BciVI	GTATCC	1 cut(s)	367
BfaI	CTAG	1 cut(s)	62
BfmI	CTRYAG	1 cut(s)	414
BfoI	RGCGCY	2 cut(s)	572, 579
BfuAI	ACCTGC	1 cut(s)	139
BfuI	GTATCC	1 cut(s)	367
BisI	GCNGC	3 cut(s)	110, 417, 560
BlsI	GCNGC	3 cut(s)	111, 418, 561
Bme18I	GGWCC	2 cut(s)	289, 442
BmgT120I	GGNCC	2 cut(s)	289, 442
BmiI	GGNNCC	3 cut(s)	290, 406, 444
BpuEI	CTTGAG	3 cut(s)	160, 329, 479
Bsc4I	CCNNNNNNNGG	1 cut(s)	362
Bse1I	ACTGG	1 cut(s)	106
Bse3DI	GCAATG	1 cut(s)	488
BseLI	CCNNNNNNNGG	1 cut(s)	362
BseMI	GCAATG	1 cut(s)	488
BseNI	ACTGG	1 cut(s)	106
BseRI	GAGGAG	1 cut(s)	444
BseXI	GCAGC	2 cut(s)	428, 571
BseYI	CCCAGC	1 cut(s)	572
BsgI	GTGCAG	1 cut(s)	296
Bsh1285I	CGRYCG	1 cut(s)	256
BshFI	GGCC	1 cut(s)	388
BsiEI	CGRYCG	1 cut(s)	256
BsiHKAI	GWGCWC	1 cut(s)	43
BslFI	GGGAC	1 cut(s)	302
BslI	CCNNNNNNNGG	1 cut(s)	362
BsmFI	GGGAC	1 cut(s)	302
BsmI	GAATGC	1 cut(s)	454
BsnI	GGCC	1 cut(s)	388
Bsp1286I	GDGCHC	2 cut(s)	43, 598
Bsp143I	GATC	4 cut(s)	86, 226, 253, 381
BspACI	CCGC	1 cut(s)	109
BspANI	GGCC	1 cut(s)	388
BspLI	GGNNCC	3 cut(s)	290, 406, 444
BspMAI	CTGCAG	1 cut(s)	418
BspMI	ACCTGC	1 cut(s)	139
BspPI	GGATC	1 cut(s)	221
BspQI	GCTCTTC	1 cut(s)	603
BsrDI	GCAATG	1 cut(s)	488
BsrI	ACTGG	1 cut(s)	106
BssMI	GATC	4 cut(s)	86, 226, 253, 381
Bst4CI	ACNGT	2 cut(s)	379, 643
Bst6I	CTCTTC	2 cut(s)	28, 603
BstH2I	RGCGCY	2 cut(s)	572, 579
BstHHI	GCGC	3 cut(s)	564, 571, 578
BstKTI	GATC	4 cut(s)	89, 229, 256, 384
BstMBI	GATC	4 cut(s)	86, 226, 253, 381
BstMCI	CGRYCG	1 cut(s)	256
BstMWI	GCNNNNNNNGC	3 cut(s)	422, 568, 575
BstSFI	CTRYAG	1 cut(s)	414
BstV1I	GCAGC	2 cut(s)	428, 571
BsuI	GTATCC	1 cut(s)	367
BsuRI	GGCC	1 cut(s)	388
BtsIMutI	CAGTG	1 cut(s)	33
BveI	ACCTGC	1 cut(s)	139
CaiI	CAGNNNCTG	1 cut(s)	362
CfoI	GCGC	3 cut(s)	564, 571, 578
Cfr13I	GGNCC	2 cut(s)	289, 442
Csp6I	GTAC	1 cut(s)	12
CviAII	CATG	1 cut(s)	163
CviQI	GTAC	1 cut(s)	12
DpnI	GATC	4 cut(s)	88, 228, 255, 383
DpnII	GATC	4 cut(s)	86, 226, 253, 381
Eam1104I	CTCTTC	2 cut(s)	28, 603
EarI	CTCTTC	2 cut(s)	28, 603
Ecl136II	GAGCTC	1 cut(s)	41
Eco24I	GRGCYC	2 cut(s)	43, 598
Eco47I	GGWCC	2 cut(s)	289, 442
Eco47III	AGCGCT	1 cut(s)	577
Eco53kI	GAGCTC	1 cut(s)	41
Eco57I	CTGAAG	2 cut(s)	9, 216
EcoICRI	GAGCTC	1 cut(s)	41
EcoO109I	RGGNCCY	1 cut(s)	289
EcoT38I	GRGCYC	2 cut(s)	43, 598
FaeI	CATG	1 cut(s)	166
FaqI	GGGAC	1 cut(s)	302
FatI	CATG	1 cut(s)	162
Fnu4HI	GCNGC	3 cut(s)	110, 417, 560
FriOI	GRGCYC	2 cut(s)	43, 598
Fsp4HI	GCNGC	3 cut(s)	110, 417, 560
FspBI	CTAG	1 cut(s)	62
GlaI	GCGC	3 cut(s)	563, 570, 577
GluI	GCNGC	3 cut(s)	110, 417, 560
GsaI	CCCAGC	1 cut(s)	576
HaeII	RGCGCY	2 cut(s)	572, 579
HaeIII	GGCC	1 cut(s)	388
HhaI	GCGC	3 cut(s)	564, 571, 578
Hin1II	CATG	1 cut(s)	166
Hin6I	GCGC	3 cut(s)	562, 569, 576
HinP1I	GCGC	3 cut(s)	562, 569, 576
HindIII	AAGCTT	1 cut(s)	324
HinfI	GANTC	3 cut(s)	58, 280, 623
HphI	GGTGA	1 cut(s)	275
Hpy188I	TCNGA	3 cut(s)	38, 215, 442
Hpy188III	TCNNGA	7 cut(s)	62, 97, 251, 308, 320, 356, 458
HpyAV	CCTTC	4 cut(s)	175, 240, 257, 302
HpyCH4III	ACNGT	2 cut(s)	379, 643
HpyCH4IV	ACGT	1 cut(s)	398
HpyCH4V	TGCA	5 cut(s)	277, 416, 493, 559, 664
HpyF10VI	GCNNNNNNNGC	3 cut(s)	422, 568, 575
HpySE526I	ACGT	1 cut(s)	398
Hsp92II	CATG	1 cut(s)	166
HspAI	GCGC	3 cut(s)	562, 569, 576
Kzo9I	GATC	4 cut(s)	86, 226, 253, 381
LguI	GCTCTTC	1 cut(s)	603
LmnI	GCTCC	1 cut(s)	457
LpnPI	CCDG	9 cut(s)	82, 87, 134, 333, 348, 369, 370, 387, 586
Lsp1109I	GCAGC	2 cut(s)	428, 571
MaeI	CTAG	1 cut(s)	62
MaeII	ACGT	1 cut(s)	398
MaeIII	GTNAC	2 cut(s)	4, 155
MalI	GATC	4 cut(s)	88, 228, 255, 383
MboI	GATC	4 cut(s)	86, 226, 253, 381
MboII	GAAGA	4 cut(s)	9, 15, 355, 590
MfeI	CAATTG	1 cut(s)	187
MhlI	GDGCHC	2 cut(s)	43, 598
MluCI	AATT	3 cut(s)	113, 187, 552
MmeI	TCCRAC	1 cut(s)	497
MnlI	CCTC	6 cut(s)	31, 352, 364, 415, 465, 643
MroXI	GAANNNNTTC	1 cut(s)	524
MseI	TTAA	2 cut(s)	50, 615
MslI	CAYNNNNRTG	1 cut(s)	255
MunI	CAATTG	1 cut(s)	187
Mva1269I	GAATGC	1 cut(s)	454
MwoI	GCNNNNNNNGC	3 cut(s)	422, 568, 575
NdeII	GATC	4 cut(s)	86, 226, 253, 381
NlaIII	CATG	1 cut(s)	166
NlaIV	GGNNCC	3 cut(s)	290, 406, 444
OliI	CACNNNNGTG	1 cut(s)	255
PciSI	GCTCTTC	1 cut(s)	603
PctI	GAATGC	1 cut(s)	454
PdmI	GAANNNNTTC	1 cut(s)	524
PfeI	GAWTC	3 cut(s)	58, 280, 623
PflMI	CCANNNNNTGG	1 cut(s)	362
PkrI	GCNGC	3 cut(s)	111, 418, 561
Ple19I	CGATCG	1 cut(s)	256
PpuMI	RGGWCCY	1 cut(s)	289
Psp124BI	GAGCTC	1 cut(s)	43
Psp5II	RGGWCCY	1 cut(s)	289
PspFI	CCCAGC	1 cut(s)	572
PspN4I	GGNNCC	3 cut(s)	290, 406, 444
PspPI	GGNCC	2 cut(s)	289, 442
PspPPI	RGGWCCY	1 cut(s)	289
PstI	CTGCAG	1 cut(s)	418
PstNI	CAGNNNCTG	1 cut(s)	362
PvuI	CGATCG	1 cut(s)	256
RsaI	GTAC	1 cut(s)	13
RsaNI	GTAC	1 cut(s)	12
RseI	CAYNNNNRTG	1 cut(s)	255
SacI	GAGCTC	1 cut(s)	43
SapI	GCTCTTC	1 cut(s)	603
SaqAI	TTAA	2 cut(s)	50, 615
SatI	GCNGC	3 cut(s)	110, 417, 560
Sau3AI	GATC	4 cut(s)	86, 226, 253, 381
Sau96I	GGNCC	2 cut(s)	289, 442
SduI	GDGCHC	2 cut(s)	43, 598
SfcI	CTRYAG	1 cut(s)	414
SinI	GGWCC	2 cut(s)	289, 442
SmiMI	CAYNNNNRTG	1 cut(s)	255
SmlI	CTYRAG	3 cut(s)	139, 308, 458
SmoI	CTYRAG	3 cut(s)	139, 308, 458
Sse9I	AATT	3 cut(s)	113, 187, 552
SsiI	CCGC	1 cut(s)	109
SspMI	CTAG	1 cut(s)	62
SstI	GAGCTC	1 cut(s)	43
TaaI	ACNGT	2 cut(s)	379, 643
TaiI	ACGT	1 cut(s)	401
TasI	AATT	3 cut(s)	113, 187, 552
TauI	GCSGC	1 cut(s)	112
TfiI	GAWTC	3 cut(s)	58, 280, 623
Tru1I	TTAA	2 cut(s)	50, 615
Tru9I	TTAA	2 cut(s)	50, 615
TscAI	CASTG	1 cut(s)	33
TseI	GCWGC	2 cut(s)	416, 559
TspDTI	ATGAA	3 cut(s)	179, 356, 564
TspGWI	ACGGA	1 cut(s)	616
TspRI	CASTG	1 cut(s)	33
Van91I	CCANNNNNTGG	1 cut(s)	362
VpaK11BI	GGWCC	2 cut(s)	289, 442
XbaI	TCTAGA	1 cut(s)	61
XmnI	GAANNNNTTC	1 cut(s)	524
XspI	CTAG	1 cut(s)	62

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.