RchiOBHm_Chr2g0144671

high affinity nitrate transporter

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
Physical Location & Seq
Reverse (-)
62268426 .. 62270539
2114 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ51459

Sequence Viewer

Length: 1170 bp
ATGGAATACGATTCCCAGTCCCCAAAGTTTGCTCTGCGCGTGGACTCTGATCACAAGTCAACACAGTTCAGAATCTTCTCCATAGACAAACCTCACATGCGAGCTTTTCACTTAGCCTGGTTCTCATACTTCTCATGCTTCCTCACCACTTTTGCCGCAGCACCTCTACTCCCCATAATCCGGGACAACCTCAACCTCACGACCACCGACATCGGCAAAGCCGGAATCGCTTCGGTCTCAGGCGCAGTCTTTGCCCGTATAGCCATGGGAACTCTTTCCGACTTATTCGGACCGCGCCTCGCCTCTGCCTCACTCCTACTCCTCACTGCACCAGCTGTCTTCTTGTTCTCAATGGCCTCGTCCCCCTTTTCTTTTCTCTTCTTGCGTTTTTGCGTCGCAAATGGCTTTGCAGGAGGTTGGGGGAACTTTGGTGGTGGAGCGACACAGCTGATCATGCCACTTGTGTTTGGCTTCATTCAACATAACGTTGGTGCTGCCAAGTTCACTGCTTGGCGAATAGCGTTTCAAATCCCTGCCGTGTTTCAGATGCTCTCCGCAATTGCAATCTTGCTTTTCGGGCAGGACATGCCGGACGGTAACATCCACCGGTTGGAGAAGTCCGGTGACAAACCGAAAGACAAGTTCTCGAATGTTTTCTGGCACGGGGTTAAAAATTACAGAGGGTGGATTCTGGCATTGACTTATGGCTATTGCTTTGGTGTTGAGCTCACTGTGGATAATATCATAGCTGAGTACTTTTACGACAGATTCAATCTCAAGCTTCACACTGCAGGGATGATAGCGGCGACTTTCGGGTTGGCCAATATTGTTTCTAGACCGACAGGAGGGGTTTTATCGGATTTGATGGCGAGGAGGTTTGGGATGAGGGGGAGGCTGTGGACTTTGTGGGTGGTGCAAACTTTGGGGGGTGTGTTCTGTGTGATTCTTGGAAGAGTTGGTTCTTTGAAGGCTTCTATTGGTGTCATGATTTTGTTCTCCTTGTGTTGCCAAAGTGCTTGTGGGCTTACATTTGGAGTGGTTCCTTTTGTTTCCAGAAGGTCACTAGGTGTCATCTCTGGTATGATAGGGGGCAGGGGCGGATCCAGGATTGAACCATTGAACGGGCTGGGATTTCTTAAACAAAAAAAAAAGCACCTCGAAATGCAGTAG

Protein Analysis

389

Amino Acids

42.56

Weight (kDa)

9.86

Isoelectric Point (pI)

37.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MFS_1 PF07690 40 - 140 4.9e-08 Major Facilitator Superfamily
MFS_1 PF07690 135 - 347 1.3e-10 Major Facilitator Superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 610
AccII CGCG 2 cut(s) 39, 295
AciI CCGC 5 cut(s) 156, 293, 555, 803, 1098
AclI AACGTT 1 cut(s) 486
AclWI GGATC 2 cut(s) 1095, 1108
AcoI YGGCCR 1 cut(s) 819
AdeI CACNNNGTG 1 cut(s) 1067
AfaI GTAC 1 cut(s) 755
AfiI CCNNNNNNNGG 4 cut(s) 180, 610, 845, 1121
AgeI ACCGGT 1 cut(s) 606
AgsI TTSAA 6 cut(s) 479, 527, 772, 967, 1112, 1120
AjnI CCWGG 2 cut(s) 116, 1103
AluBI AGCT 6 cut(s) 104, 335, 448, 727, 749, 781
AluI AGCT 6 cut(s) 104, 335, 448, 727, 749, 781
Alw21I GWGCWC 1 cut(s) 729
Alw26I GTCTC 1 cut(s) 241
AlwI GGATC 2 cut(s) 1095, 1108
AoxI GGCC 2 cut(s) 354, 819
ApeKI GCWGC 2 cut(s) 158, 494
AsiGI ACCGGT 1 cut(s) 606
Asp700I GAANNNNTTC 3 cut(s) 229, 274, 653
AspLEI GCGC 3 cut(s) 39, 245, 297
AspS9I GGNCC 1 cut(s) 290
AsuC2I CCSGG 1 cut(s) 182
AsuHPI GGTGA 2 cut(s) 136, 635
AvaII GGWCC 1 cut(s) 290
BalI TGGCCA 1 cut(s) 821
BamHI GGATCC 1 cut(s) 1100
BanII GRGCYC 1 cut(s) 729
BbsI GAAGAC 1 cut(s) 331
Bbv12I GWGCWC 1 cut(s) 729
BbvI GCAGC 2 cut(s) 170, 481
BccI CCATC 1 cut(s) 859
BceAI ACGGC 1 cut(s) 521
BciT130I CCWGG 2 cut(s) 118, 1105
BclI TGATCA 2 cut(s) 49, 450
BcnI CCSGG 1 cut(s) 182
BcoDI GTCTC 1 cut(s) 241
BfaI CTAG 2 cut(s) 834, 1064
BfmI CTRYAG 1 cut(s) 789
BisI GCNGC 4 cut(s) 156, 159, 495, 804
BlsI GCNGC 4 cut(s) 157, 160, 496, 805
BmcAI AGTACT 1 cut(s) 755
Bme1390I CCNGG 3 cut(s) 118, 182, 1105
Bme18I GGWCC 1 cut(s) 290
BmgT120I GGNCC 1 cut(s) 290
BmiI GGNNCC 2 cut(s) 1041, 1102
BmrFI CCNGG 3 cut(s) 118, 182, 1105
BmrI ACTGGG 1 cut(s) 10
BmsI GCATC 1 cut(s) 537
BmuI ACTGGG 1 cut(s) 10
BpiI GAAGAC 1 cut(s) 331
BpuEI CTTGAG 1 cut(s) 761
BpuMI CCSGG 1 cut(s) 182
BsaI GGTCTC 1 cut(s) 241
BsaJI CCNNGG 1 cut(s) 264
BsaWI WCCGGW 2 cut(s) 606, 620
BsaXI ACNNNNNCTCC 4 cut(s) 153, 183, 303, 333
Bsc4I CCNNNNNNNGG 4 cut(s) 180, 610, 845, 1121
Bse118I RCCGGY 1 cut(s) 606
Bse1I ACTGG 1 cut(s) 16
BseBI CCWGG 2 cut(s) 118, 1105
BseDI CCNNGG 1 cut(s) 264
BseGI GGATG 3 cut(s) 600, 801, 888
BseLI CCNNNNNNNGG 4 cut(s) 180, 610, 845, 1121
BseMII CTCAG 2 cut(s) 252, 741
BseNI ACTGG 1 cut(s) 16
BseRI GAGGAG 2 cut(s) 311, 886
BseXI GCAGC 2 cut(s) 170, 481
BseYI CCCAGC 1 cut(s) 1126
BsgI GTGCAG 1 cut(s) 312
Bsh1236I CGCG 2 cut(s) 39, 295
BshFI GGCC 2 cut(s) 356, 821
BshTI ACCGGT 1 cut(s) 606
BsiHKAI GWGCWC 1 cut(s) 729
BsiSI CCGG 5 cut(s) 181, 222, 590, 607, 621
BslFI GGGAC 3 cut(s) 4, 197, 346
BslI CCNNNNNNNGG 4 cut(s) 180, 610, 845, 1121
BsmAI GTCTC 1 cut(s) 241
BsmFI GGGAC 3 cut(s) 4, 197, 346
BsnI GGCC 2 cut(s) 356, 821
Bso31I GGTCTC 1 cut(s) 241
Bsp1286I GDGCHC 1 cut(s) 729
Bsp143I GATC 3 cut(s) 49, 450, 1100
Bsp19I CCATGG 1 cut(s) 264
BspACI CCGC 5 cut(s) 156, 293, 555, 803, 1098
BspANI GGCC 2 cut(s) 356, 821
BspCNI CTCAG 2 cut(s) 251, 742
BspFNI CGCG 2 cut(s) 39, 295
BspHI TCATGA 1 cut(s) 984
BspLI GGNNCC 2 cut(s) 1041, 1102
BspMAI CTGCAG 1 cut(s) 793
BspPI GGATC 2 cut(s) 1095, 1108
BspTNI GGTCTC 1 cut(s) 241
BsrFI RCCGGY 1 cut(s) 606
BsrI ACTGG 1 cut(s) 16
BssAI RCCGGY 1 cut(s) 606
BssECI CCNNGG 1 cut(s) 264
BssMI GATC 3 cut(s) 49, 450, 1100
BssT1I CCWWGG 1 cut(s) 264
Bst2UI CCWGG 2 cut(s) 118, 1105
Bst4CI ACNGT 3 cut(s) 66, 596, 733
Bst6I CTCTTC 2 cut(s) 383, 946
BstAPI GCANNNNNTGC 2 cut(s) 251, 586
BstC8I GCNNGC 1 cut(s) 102
BstDEI CTNAG 3 cut(s) 112, 238, 750
BstDSI CCRYGG 1 cut(s) 264
BstF5I GGATG 3 cut(s) 600, 801, 888
BstFNI CGCG 2 cut(s) 39, 295
BstHHI GCGC 3 cut(s) 39, 245, 297
BstKTI GATC 3 cut(s) 52, 453, 1103
BstMAI GTCTC 1 cut(s) 241
BstMBI GATC 3 cut(s) 49, 450, 1100
BstMWI GCNNNNNNNGC 6 cut(s) 227, 251, 260, 454, 577, 586
BstNI CCWGG 2 cut(s) 118, 1105
BstNSI RCATGY 2 cut(s) 100, 589
BstSCI CCNGG 3 cut(s) 116, 180, 1103
BstSFI CTRYAG 1 cut(s) 789
BstUI CGCG 2 cut(s) 39, 295
BstV1I GCAGC 2 cut(s) 170, 481
BstV2I GAAGAC 1 cut(s) 331
BstX2I RGATCY 1 cut(s) 1100
BstYI RGATCY 1 cut(s) 1100
BsuRI GGCC 2 cut(s) 356, 821
BtgI CCRYGG 1 cut(s) 264
BtsCI GGATG 3 cut(s) 600, 801, 888
BtsI GCAGTG 3 cut(s) 324, 504, 786
BtsIMutI CAGTG 4 cut(s) 324, 504, 729, 786
Cac8I GCNNGC 1 cut(s) 102
CciI TCATGA 1 cut(s) 984
CfoI GCGC 3 cut(s) 39, 245, 297
Cfr10I RCCGGY 1 cut(s) 606
Cfr13I GGNCC 1 cut(s) 290
CpoI CGGWCCG 1 cut(s) 290
CseI GACGC 1 cut(s) 382
Csp6I GTAC 1 cut(s) 754
CspAI ACCGGT 1 cut(s) 606
CspI CGGWCCG 1 cut(s) 290
CviAII CATG 6 cut(s) 97, 135, 265, 454, 586, 985
CviQI GTAC 1 cut(s) 754
DdeI CTNAG 3 cut(s) 112, 238, 750
DpnI GATC 3 cut(s) 51, 452, 1102
DpnII GATC 3 cut(s) 49, 450, 1100
DraIII CACNNNGTG 1 cut(s) 1067
EaeI YGGCCR 1 cut(s) 819
Eam1104I CTCTTC 2 cut(s) 383, 946
EarI CTCTTC 2 cut(s) 383, 946
EciI GGCGGA 1 cut(s) 1113
Ecl136II GAGCTC 1 cut(s) 727
Eco130I CCWWGG 1 cut(s) 264
Eco24I GRGCYC 1 cut(s) 729
Eco31I GGTCTC 1 cut(s) 241
Eco47I GGWCC 1 cut(s) 290
Eco53kI GAGCTC 1 cut(s) 727
EcoICRI GAGCTC 1 cut(s) 727
EcoRII CCWGG 2 cut(s) 116, 1103
EcoT14I CCWWGG 1 cut(s) 264
EcoT38I GRGCYC 1 cut(s) 729
ErhI CCWWGG 1 cut(s) 264
FaeI CATG 6 cut(s) 100, 138, 268, 457, 589, 988
FaqI GGGAC 3 cut(s) 4, 197, 346
FatI CATG 6 cut(s) 96, 134, 264, 453, 585, 984
FbaI TGATCA 2 cut(s) 49, 450
Fnu4HI GCNGC 4 cut(s) 156, 159, 495, 804
FokI GGATG 3 cut(s) 587, 808, 895
FriOI GRGCYC 1 cut(s) 729
Fsp4HI GCNGC 4 cut(s) 156, 159, 495, 804
FspBI CTAG 2 cut(s) 834, 1064
GlaI GCGC 3 cut(s) 38, 244, 296
GluI GCNGC 4 cut(s) 156, 159, 495, 804
GsaI CCCAGC 1 cut(s) 1130
HaeIII GGCC 2 cut(s) 356, 821
HapII CCGG 5 cut(s) 181, 222, 590, 607, 621
HgaI GACGC 1 cut(s) 382
HhaI GCGC 3 cut(s) 39, 245, 297
Hin1II CATG 6 cut(s) 100, 138, 268, 457, 589, 988
Hin6I GCGC 3 cut(s) 37, 243, 295
HinP1I GCGC 3 cut(s) 37, 243, 295
HincII GTYRAC 1 cut(s) 60
HindII GTYRAC 1 cut(s) 60
HindIII AAGCTT 1 cut(s) 779
HinfI GANTC 7 cut(s) 11, 44, 72, 225, 688, 768, 943
HpaII CCGG 5 cut(s) 181, 222, 590, 607, 621
HphI GGTGA 2 cut(s) 136, 635
Hpy166II GTNNAC 4 cut(s) 43, 60, 504, 900
Hpy188I TCNGA 6 cut(s) 49, 71, 280, 290, 546, 859
Hpy188III TCNNGA 5 cut(s) 199, 646, 834, 985, 1053
Hpy8I GTNNAC 4 cut(s) 43, 60, 504, 900
Hpy99I CGWCG 1 cut(s) 398
HpyAV CCTTC 2 cut(s) 961, 1050
HpyCH4III ACNGT 3 cut(s) 66, 596, 733
HpyCH4IV ACGT 1 cut(s) 486
HpyCH4V TGCA 6 cut(s) 329, 410, 563, 791, 916, 1165
HpyF10VI GCNNNNNNNGC 6 cut(s) 227, 251, 260, 454, 577, 586
HpyF3I CTNAG 3 cut(s) 112, 238, 750
HpySE526I ACGT 1 cut(s) 486
Hsp92II CATG 6 cut(s) 100, 138, 268, 457, 589, 988
HspAI GCGC 3 cut(s) 37, 243, 295
Ksp22I TGATCA 2 cut(s) 49, 450
Kzo9I GATC 3 cut(s) 49, 450, 1100
LmnI GCTCC 1 cut(s) 437
Lsp1109I GCAGC 2 cut(s) 170, 481
LweI GCATC 1 cut(s) 537
MaeI CTAG 2 cut(s) 834, 1064
MaeII ACGT 1 cut(s) 486
MaeIII GTNAC 3 cut(s) 596, 623, 1059
MalI GATC 3 cut(s) 51, 452, 1102
MboI GATC 3 cut(s) 49, 450, 1100
MboII GAAGA 4 cut(s) 67, 331, 370, 963
MfeI CAATTG 1 cut(s) 558
MflI RGATCY 1 cut(s) 1100
MhlI GDGCHC 1 cut(s) 729
MlsI TGGCCA 1 cut(s) 821
MluCI AATT 2 cut(s) 558, 673
MluNI TGGCCA 1 cut(s) 821
MlyI GAGTC 1 cut(s) 38
MmeI TCCRAC 2 cut(s) 303, 591
Mox20I TGGCCA 1 cut(s) 821
MroXI GAANNNNTTC 3 cut(s) 229, 274, 653
MscI TGGCCA 1 cut(s) 821
MseI TTAA 2 cut(s) 669, 1137
Msp20I TGGCCA 1 cut(s) 821
MspA1I CMGCKG 2 cut(s) 335, 448
MspI CCGG 5 cut(s) 181, 222, 590, 607, 621
MspR9I CCNGG 3 cut(s) 118, 182, 1105
MunI CAATTG 1 cut(s) 558
MvaI CCWGG 2 cut(s) 118, 1105
MvnI CGCG 2 cut(s) 39, 295
MwoI GCNNNNNNNGC 6 cut(s) 227, 251, 260, 454, 577, 586
NciI CCSGG 1 cut(s) 182
NcoI CCATGG 1 cut(s) 264
NdeII GATC 3 cut(s) 49, 450, 1100
NlaIII CATG 6 cut(s) 100, 138, 268, 457, 589, 988
NlaIV GGNNCC 2 cut(s) 1041, 1102
NmuCI GTSAC 2 cut(s) 623, 1059
NspI RCATGY 2 cut(s) 100, 589
PagI TCATGA 1 cut(s) 984
PdmI GAANNNNTTC 3 cut(s) 229, 274, 653
PfeI GAWTC 6 cut(s) 11, 72, 225, 688, 768, 943
PflMI CCANNNNNTGG 1 cut(s) 610
PfoI TCCNGGA 2 cut(s) 180, 1103
PinAI ACCGGT 1 cut(s) 606
PkrI GCNGC 4 cut(s) 157, 160, 496, 805
PleI GAGTC 1 cut(s) 38
PpsI GAGTC 1 cut(s) 38
Psp124BI GAGCTC 1 cut(s) 729
Psp1406I AACGTT 1 cut(s) 486
Psp6I CCWGG 2 cut(s) 116, 1103
PspFI CCCAGC 1 cut(s) 1126
PspGI CCWGG 2 cut(s) 116, 1103
PspN4I GGNNCC 2 cut(s) 1041, 1102
PspPI GGNCC 1 cut(s) 290
PstI CTGCAG 1 cut(s) 793
PsuI RGATCY 1 cut(s) 1100
PvuII CAGCTG 2 cut(s) 335, 448
RsaI GTAC 1 cut(s) 755
RsaNI GTAC 1 cut(s) 754
Rsr2I CGGWCCG 1 cut(s) 290
RsrII CGGWCCG 1 cut(s) 290
SacI GAGCTC 1 cut(s) 729
SaqAI TTAA 2 cut(s) 669, 1137
SatI GCNGC 4 cut(s) 156, 159, 495, 804
Sau3AI GATC 3 cut(s) 49, 450, 1100
Sau96I GGNCC 1 cut(s) 290
ScaI AGTACT 1 cut(s) 755
SchI GAGTC 1 cut(s) 38
ScrFI CCNGG 3 cut(s) 118, 182, 1105
SduI GDGCHC 1 cut(s) 729
SfaNI GCATC 1 cut(s) 537
SfcI CTRYAG 1 cut(s) 789
SinI GGWCC 1 cut(s) 290
SmlI CTYRAG 1 cut(s) 776
SmoI CTYRAG 1 cut(s) 776
Sse9I AATT 2 cut(s) 558, 673
SsiI CCGC 5 cut(s) 156, 293, 555, 803, 1098
SspI AATATT 1 cut(s) 826
SspMI CTAG 2 cut(s) 834, 1064
SstI GAGCTC 1 cut(s) 729
StyD4I CCNGG 3 cut(s) 116, 180, 1103
StyI CCWWGG 1 cut(s) 264
TaaI ACNGT 3 cut(s) 66, 596, 733
TaiI ACGT 1 cut(s) 489
TaqI TCGA 2 cut(s) 647, 1158
TaqII GACCGA 2 cut(s) 223, 853
TasI AATT 2 cut(s) 558, 673
TatI WGTACW 1 cut(s) 753
TauI GCSGC 2 cut(s) 158, 806
TfiI GAWTC 6 cut(s) 11, 72, 225, 688, 768, 943
Tru1I TTAA 2 cut(s) 669, 1137
Tru9I TTAA 2 cut(s) 669, 1137
TscAI CASTG 4 cut(s) 331, 511, 736, 793
TseFI GTSAC 2 cut(s) 623, 1059
TseI GCWGC 2 cut(s) 158, 494
Tsp45I GTSAC 2 cut(s) 623, 1059
TspDTI ATGAA 1 cut(s) 463
TspRI CASTG 4 cut(s) 331, 511, 736, 793
Van91I CCANNNNNTGG 1 cut(s) 610
VpaK11BI GGWCC 1 cut(s) 290
XbaI TCTAGA 1 cut(s) 833
XceI RCATGY 2 cut(s) 100, 589
XcmI CCANNNNNNNNNTGG 1 cut(s) 1016
XmnI GAANNNNTTC 3 cut(s) 229, 274, 653
XspI CTAG 2 cut(s) 834, 1064
ZrmI AGTACT 1 cut(s) 755
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.