Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0005098

Physical Location & Seq

Genomic Coordinates Reverse (-)

66559616 .. 66560443

Gene Structure 828 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG460900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 828 bp

ATGGAATACGATTCCCAGTCCCCAAAGTTTGCTCTGCGCGTGGACTCTGATCACAAGGCAACAGAGTTCAGAATCTTCTCCATAGACAAACCTCACATGCGAGCTTTTCACTTAGCCTGGTTCTCATACTTCTCATGCTTCCTCACCACTTTTGCCGCAGCACCTCTACTCCCCATAATCCGGGACAACCTCAACCTCACGACCACCGACATCGGCAAAGCCGGAATCGCTTCGGTCTCAGGCGCAGTCTTTGCCCGTATAGCCATGGGAACTCTTTCCGACTTATTCGGACCGCGCCTCGCCTCTGCCTCACTCCTACTCCTCACTGCACCAGCTGTCTTCTTGTTCTCAATGGCCTCGTCCCCCTTTTCTTTTCTCTTCCTGCGTTTTTGCGTCGGTATCTCTTTGGCCAACTTTGTTCAAACTTTGTTCTGGATGAGCTCTATGTTTTCGCCTCCGGTGGTCGGCACAGCAAATGGCTTTGCAGGAGGTTGGGGGAACTTTGGTGGTGGAGCGACACAACTGATCATGCCACTTGTGTTTGGCTTCATTCAACATAACGTTGGTGCTGCCAAGTTCACTGCTTGGCGAATAGCGTTTCAAATCCCTGCCGTGTTTCAGATGCTCTCCGCAATTGCAATCTTGCTTTTCGGGCAGGACATGCCGGACGGTAACTTCCACCGGTTGGAGAAGTCCGGTGACAAACCGAAAGACAAGTTCTCGAATGTTTTCTGGCACGGGGTTAAAAATTACAGAGGGTGGATTCTGGCATTGACTTATGGCTATTGCTTTGGTACGGTGTTGAGCTCACTGTGGATAATATCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0001101 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0008150 GO:0008509 GO:0009705 GO:0009987 GO:0010035 GO:0010167 GO:0015075 GO:0015103 GO:0015112 GO:0015318 GO:0015698 GO:0015706 GO:0016020 GO:0022857 GO:0031090 GO:0034220 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0070887 GO:0071229 GO:0071241 GO:0071249 GO:0071705 GO:0071944 GO:0098588 GO:0098656 GO:0098805 GO:1901698 GO:1901699 GO:1901700 GO:1901701 GO:1902170

KEGG Pathways

Metabolic & Signaling

ko00910 map00910

Pfam Domains

Protein Families

MFS_1

Protein Analysis

275

Amino Acids

30.25

Weight (kDa)

9.37

Isoelectric Point (pI)

32.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MFS_1	PF07690	40 - 271	6.9e-19	Major Facilitator Superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0005098)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12940
fragaria_vesca	FvH4_4g25770 FvH4_4g25780
malus_domestica	MD13G1096700.v1.1
prunus_persica	Prupe.1G249000_v2.0.a1
pyrus_communis	pycom13g08430
rosa_chinensis	RchiOBHm_Chr2g0144671 RchiOBHm_Chr4g0433231 RchiOBHm_Chr4g0433241
rosa_laevigata	RLG00000006772 RLG00000006773 RLG00000020099
rosa_multiflora	Rmu_sc0000957.1_g000005 Rmu_sc0001623.1_g000001 Rmu_ssc0000295.1_g000002
rosa_roxburghii	Rroxscaffold_5G00374770 Rroxscaffold_5G00374790
rosa_rugosa	Rorug02G0388600 Rorug04G0267000 Rorug04G0267100
rosa_samantha	Rh2BG450900 Rh2DG460900 Rh4AG321600 Rh4AG321800 Rh4BG328700 Rh4CG344100 Rh4DG325400 Rh4DG325900
rosa_wichuraiana	Rw2G036030 Rw4G027850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	685
AccII	CGCG	2 cut(s)	39, 295
AciI	CCGC	3 cut(s)	156, 293, 630
AclI	AACGTT	1 cut(s)	561
AcoI	YGGCCR	1 cut(s)	408
AfaI	GTAC	1 cut(s)	796
AfiI	CCNNNNNNNGG	3 cut(s)	180, 464, 685
AgeI	ACCGGT	1 cut(s)	681
AgsI	TTSAA	3 cut(s)	422, 554, 602
AjnI	CCWGG	1 cut(s)	116
AluBI	AGCT	4 cut(s)	104, 335, 441, 807
AluI	AGCT	4 cut(s)	104, 335, 441, 807
Alw21I	GWGCWC	2 cut(s)	443, 809
Alw26I	GTCTC	1 cut(s)	241
AoxI	GGCC	2 cut(s)	354, 408
ApeKI	GCWGC	2 cut(s)	158, 569
AsiGI	ACCGGT	1 cut(s)	681
Asp700I	GAANNNNTTC	3 cut(s)	229, 274, 728
AspLEI	GCGC	3 cut(s)	39, 245, 297
AspS9I	GGNCC	1 cut(s)	290
AsuC2I	CCSGG	1 cut(s)	182
AsuHPI	GGTGA	2 cut(s)	136, 710
AvaII	GGWCC	1 cut(s)	290
BalI	TGGCCA	1 cut(s)	410
BanII	GRGCYC	2 cut(s)	443, 809
BbsI	GAAGAC	1 cut(s)	331
Bbv12I	GWGCWC	2 cut(s)	443, 809
BbvI	GCAGC	2 cut(s)	170, 556
BceAI	ACGGC	1 cut(s)	596
BciT130I	CCWGG	1 cut(s)	118
BclI	TGATCA	2 cut(s)	49, 525
BcnI	CCSGG	1 cut(s)	182
BcoDI	GTCTC	1 cut(s)	241
BisI	GCNGC	3 cut(s)	156, 159, 570
BlsI	GCNGC	3 cut(s)	157, 160, 571
Bme1390I	CCNGG	2 cut(s)	118, 182
Bme18I	GGWCC	1 cut(s)	290
BmgT120I	GGNCC	1 cut(s)	290
BmrFI	CCNGG	2 cut(s)	118, 182
BmrI	ACTGGG	1 cut(s)	10
BmsI	GCATC	1 cut(s)	612
BmuI	ACTGGG	1 cut(s)	10
BpiI	GAAGAC	1 cut(s)	331
BpuMI	CCSGG	1 cut(s)	182
BsaI	GGTCTC	1 cut(s)	241
BsaJI	CCNNGG	1 cut(s)	264
BsaWI	WCCGGW	3 cut(s)	457, 681, 695
BsaXI	ACNNNNNCTCC	4 cut(s)	153, 183, 303, 333
Bsc4I	CCNNNNNNNGG	3 cut(s)	180, 464, 685
Bse118I	RCCGGY	1 cut(s)	681
Bse1I	ACTGG	1 cut(s)	16
BseBI	CCWGG	1 cut(s)	118
BseDI	CCNNGG	1 cut(s)	264
BseGI	GGATG	1 cut(s)	441
BseLI	CCNNNNNNNGG	3 cut(s)	180, 464, 685
BseMII	CTCAG	1 cut(s)	252
BseNI	ACTGG	1 cut(s)	16
BseRI	GAGGAG	1 cut(s)	311
BseXI	GCAGC	2 cut(s)	170, 556
BsgI	GTGCAG	1 cut(s)	312
Bsh1236I	CGCG	2 cut(s)	39, 295
BshFI	GGCC	2 cut(s)	356, 410
BshTI	ACCGGT	1 cut(s)	681
BsiHKAI	GWGCWC	2 cut(s)	443, 809
BsiSI	CCGG	6 cut(s)	181, 222, 458, 665, 682, 696
BslFI	GGGAC	3 cut(s)	4, 197, 346
BslI	CCNNNNNNNGG	3 cut(s)	180, 464, 685
BsmAI	GTCTC	1 cut(s)	241
BsmFI	GGGAC	3 cut(s)	4, 197, 346
BsnI	GGCC	2 cut(s)	356, 410
Bso31I	GGTCTC	1 cut(s)	241
Bsp1286I	GDGCHC	2 cut(s)	443, 809
Bsp143I	GATC	2 cut(s)	49, 525
Bsp19I	CCATGG	1 cut(s)	264
BspACI	CCGC	3 cut(s)	156, 293, 630
BspANI	GGCC	2 cut(s)	356, 410
BspCNI	CTCAG	1 cut(s)	251
BspFNI	CGCG	2 cut(s)	39, 295
BspTNI	GGTCTC	1 cut(s)	241
BsrFI	RCCGGY	1 cut(s)	681
BsrI	ACTGG	1 cut(s)	16
BssAI	RCCGGY	1 cut(s)	681
BssECI	CCNNGG	1 cut(s)	264
BssMI	GATC	2 cut(s)	49, 525
BssT1I	CCWWGG	1 cut(s)	264
Bst2UI	CCWGG	1 cut(s)	118
Bst4CI	ACNGT	3 cut(s)	671, 799, 813
Bst6I	CTCTTC	1 cut(s)	383
BstAPI	GCANNNNNTGC	2 cut(s)	251, 661
BstC8I	GCNNGC	1 cut(s)	102
BstDEI	CTNAG	2 cut(s)	112, 238
BstDSI	CCRYGG	1 cut(s)	264
BstF5I	GGATG	1 cut(s)	441
BstFNI	CGCG	2 cut(s)	39, 295
BstHHI	GCGC	3 cut(s)	39, 245, 297
BstKTI	GATC	2 cut(s)	52, 528
BstMAI	GTCTC	1 cut(s)	241
BstMBI	GATC	2 cut(s)	49, 525
BstMWI	GCNNNNNNNGC	5 cut(s)	227, 251, 260, 652, 661
BstNI	CCWGG	1 cut(s)	118
BstNSI	RCATGY	2 cut(s)	100, 664
BstSCI	CCNGG	2 cut(s)	116, 180
BstUI	CGCG	2 cut(s)	39, 295
BstV1I	GCAGC	2 cut(s)	170, 556
BstV2I	GAAGAC	1 cut(s)	331
BsuRI	GGCC	2 cut(s)	356, 410
BtgI	CCRYGG	1 cut(s)	264
BtsCI	GGATG	1 cut(s)	441
BtsI	GCAGTG	2 cut(s)	324, 579
BtsIMutI	CAGTG	3 cut(s)	324, 579, 809
Cac8I	GCNNGC	1 cut(s)	102
CfoI	GCGC	3 cut(s)	39, 245, 297
Cfr10I	RCCGGY	1 cut(s)	681
Cfr13I	GGNCC	1 cut(s)	290
CpoI	CGGWCCG	1 cut(s)	290
CseI	GACGC	1 cut(s)	382
Csp6I	GTAC	1 cut(s)	795
CspAI	ACCGGT	1 cut(s)	681
CspI	CGGWCCG	1 cut(s)	290
CviAII	CATG	5 cut(s)	97, 135, 265, 529, 661
CviQI	GTAC	1 cut(s)	795
DdeI	CTNAG	2 cut(s)	112, 238
DpnI	GATC	2 cut(s)	51, 527
DpnII	GATC	2 cut(s)	49, 525
EaeI	YGGCCR	1 cut(s)	408
Eam1104I	CTCTTC	1 cut(s)	383
EarI	CTCTTC	1 cut(s)	383
Ecl136II	GAGCTC	2 cut(s)	441, 807
Eco130I	CCWWGG	1 cut(s)	264
Eco24I	GRGCYC	2 cut(s)	443, 809
Eco31I	GGTCTC	1 cut(s)	241
Eco47I	GGWCC	1 cut(s)	290
Eco53kI	GAGCTC	2 cut(s)	441, 807
EcoICRI	GAGCTC	2 cut(s)	441, 807
EcoRII	CCWGG	1 cut(s)	116
EcoT14I	CCWWGG	1 cut(s)	264
EcoT38I	GRGCYC	2 cut(s)	443, 809
ErhI	CCWWGG	1 cut(s)	264
FaeI	CATG	5 cut(s)	100, 138, 268, 532, 664
FaqI	GGGAC	3 cut(s)	4, 197, 346
FatI	CATG	5 cut(s)	96, 134, 264, 528, 660
FbaI	TGATCA	2 cut(s)	49, 525
Fnu4HI	GCNGC	3 cut(s)	156, 159, 570
FokI	GGATG	1 cut(s)	448
FriOI	GRGCYC	2 cut(s)	443, 809
Fsp4HI	GCNGC	3 cut(s)	156, 159, 570
GlaI	GCGC	3 cut(s)	38, 244, 296
GluI	GCNGC	3 cut(s)	156, 159, 570
HaeIII	GGCC	2 cut(s)	356, 410
HapII	CCGG	6 cut(s)	181, 222, 458, 665, 682, 696
HgaI	GACGC	1 cut(s)	382
HhaI	GCGC	3 cut(s)	39, 245, 297
Hin1II	CATG	5 cut(s)	100, 138, 268, 532, 664
Hin6I	GCGC	3 cut(s)	37, 243, 295
HinP1I	GCGC	3 cut(s)	37, 243, 295
HinfI	GANTC	5 cut(s)	11, 44, 72, 225, 763
HpaII	CCGG	6 cut(s)	181, 222, 458, 665, 682, 696
HphI	GGTGA	2 cut(s)	136, 710
Hpy166II	GTNNAC	2 cut(s)	43, 579
Hpy188I	TCNGA	5 cut(s)	49, 71, 280, 290, 621
Hpy188III	TCNNGA	3 cut(s)	199, 433, 721
Hpy8I	GTNNAC	2 cut(s)	43, 579
Hpy99I	CGWCG	1 cut(s)	398
HpyCH4III	ACNGT	3 cut(s)	671, 799, 813
HpyCH4IV	ACGT	1 cut(s)	561
HpyCH4V	TGCA	3 cut(s)	329, 485, 638
HpyF10VI	GCNNNNNNNGC	5 cut(s)	227, 251, 260, 652, 661
HpyF3I	CTNAG	2 cut(s)	112, 238
HpySE526I	ACGT	1 cut(s)	561
Hsp92II	CATG	5 cut(s)	100, 138, 268, 532, 664
HspAI	GCGC	3 cut(s)	37, 243, 295
Ksp22I	TGATCA	2 cut(s)	49, 525
Kzo9I	GATC	2 cut(s)	49, 525
LmnI	GCTCC	1 cut(s)	512
Lsp1109I	GCAGC	2 cut(s)	170, 556
LweI	GCATC	1 cut(s)	612
MaeII	ACGT	1 cut(s)	561
MaeIII	GTNAC	2 cut(s)	671, 698
MalI	GATC	2 cut(s)	51, 527
MboI	GATC	2 cut(s)	49, 525
MboII	GAAGA	3 cut(s)	67, 331, 370
MfeI	CAATTG	1 cut(s)	633
MhlI	GDGCHC	2 cut(s)	443, 809
MlsI	TGGCCA	1 cut(s)	410
MluCI	AATT	2 cut(s)	633, 748
MluNI	TGGCCA	1 cut(s)	410
MlyI	GAGTC	1 cut(s)	38
MmeI	TCCRAC	2 cut(s)	303, 666
Mox20I	TGGCCA	1 cut(s)	410
MroXI	GAANNNNTTC	3 cut(s)	229, 274, 728
MscI	TGGCCA	1 cut(s)	410
MseI	TTAA	1 cut(s)	744
Msp20I	TGGCCA	1 cut(s)	410
MspA1I	CMGCKG	1 cut(s)	335
MspI	CCGG	6 cut(s)	181, 222, 458, 665, 682, 696
MspR9I	CCNGG	2 cut(s)	118, 182
MunI	CAATTG	1 cut(s)	633
MvaI	CCWGG	1 cut(s)	118
MvnI	CGCG	2 cut(s)	39, 295
MwoI	GCNNNNNNNGC	5 cut(s)	227, 251, 260, 652, 661
NciI	CCSGG	1 cut(s)	182
NcoI	CCATGG	1 cut(s)	264
NdeII	GATC	2 cut(s)	49, 525
NlaIII	CATG	5 cut(s)	100, 138, 268, 532, 664
NmuCI	GTSAC	1 cut(s)	698
NspI	RCATGY	2 cut(s)	100, 664
PdmI	GAANNNNTTC	3 cut(s)	229, 274, 728
PfeI	GAWTC	4 cut(s)	11, 72, 225, 763
PflMI	CCANNNNNTGG	1 cut(s)	685
PfoI	TCCNGGA	1 cut(s)	180
PinAI	ACCGGT	1 cut(s)	681
PkrI	GCNGC	3 cut(s)	157, 160, 571
PleI	GAGTC	1 cut(s)	38
PpsI	GAGTC	1 cut(s)	38
Psp124BI	GAGCTC	2 cut(s)	443, 809
Psp1406I	AACGTT	1 cut(s)	561
Psp6I	CCWGG	1 cut(s)	116
PspGI	CCWGG	1 cut(s)	116
PspPI	GGNCC	1 cut(s)	290
PvuII	CAGCTG	1 cut(s)	335
RsaI	GTAC	1 cut(s)	796
RsaNI	GTAC	1 cut(s)	795
Rsr2I	CGGWCCG	1 cut(s)	290
RsrII	CGGWCCG	1 cut(s)	290
SacI	GAGCTC	2 cut(s)	443, 809
SaqAI	TTAA	1 cut(s)	744
SatI	GCNGC	3 cut(s)	156, 159, 570
Sau3AI	GATC	2 cut(s)	49, 525
Sau96I	GGNCC	1 cut(s)	290
SchI	GAGTC	1 cut(s)	38
ScrFI	CCNGG	2 cut(s)	118, 182
SduI	GDGCHC	2 cut(s)	443, 809
SfaNI	GCATC	1 cut(s)	612
SinI	GGWCC	1 cut(s)	290
Sse9I	AATT	2 cut(s)	633, 748
SsiI	CCGC	3 cut(s)	156, 293, 630
SstI	GAGCTC	2 cut(s)	443, 809
StyD4I	CCNGG	2 cut(s)	116, 180
StyI	CCWWGG	1 cut(s)	264
TaaI	ACNGT	3 cut(s)	671, 799, 813
TaiI	ACGT	1 cut(s)	564
TaqI	TCGA	1 cut(s)	722
TaqII	GACCGA	1 cut(s)	223
TasI	AATT	2 cut(s)	633, 748
TauI	GCSGC	1 cut(s)	158
TfiI	GAWTC	4 cut(s)	11, 72, 225, 763
Tru1I	TTAA	1 cut(s)	744
Tru9I	TTAA	1 cut(s)	744
TscAI	CASTG	3 cut(s)	331, 586, 816
TseFI	GTSAC	1 cut(s)	698
TseI	GCWGC	2 cut(s)	158, 569
Tsp45I	GTSAC	1 cut(s)	698
TspDTI	ATGAA	1 cut(s)	538
TspRI	CASTG	3 cut(s)	331, 586, 816
Van91I	CCANNNNNTGG	1 cut(s)	685
VpaK11BI	GGWCC	1 cut(s)	290
XceI	RCATGY	2 cut(s)	100, 664
XmnI	GAANNNNTTC	3 cut(s)	229, 274, 728

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.