Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008021

Physical Location & Seq

Genomic Coordinates Forward (+)

4494924 .. 4498469

Gene Structure 3546 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G13180.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1284 bp

ATGGATCCGACTTCTCGACCCGCTATTGTCATCGACAATGGAACTGGGTATACTAAAATGGGATTTGCGGGTAATGTAGAGCCATGTTTTATCTTACCAACAGTAGTTGCAGTAAACGAGTCGTTTTTGAATCAATCCAAGAGTTCTTCTAAGGCAACTTGGCAAACTCAGCACAACGCTGGAGTTGCTGCGGATCTCGATTTCTATATTGGAGATGAAGCTCTTGCGAAATCGCGGTCTAGTAGTACTCATAATCTTCATTATCCAATTGAGCATGGTCAAGTTGAGGATTGGGATGCTATGGAGAGATATTGGCAGCAGTGTATATTTAACTATTTGAGATGTGATCCTGAGGATCATTATTTTCTTCTTACTGAAAGTCCTCTTACTCCTCCTGAAAGTCGAGAATATACTGGAGAAATTTTGTTTGAGACTTTTAATGTTCCTGGGCTTTACATTGCTGTTAATTCAGTTCTTGCACTTGCTGCTGGCTACACAACATCAAAGTGTGAGATGACAGGGGTTGTAGTAGATGTTGGAGATGGGGCAACTCATGTTGTACCTGTTGCAGAAGGTTATGTCATCGGGAGCTGTATCAAATCGATTCCAATTGCTGGCAAAGATGTCACCCTCTTTATCCAGCAACTCATGCGGGAAAGAGGTGAGAATATACCACCAGAAGATTCATTCGATGTAGCCCGTAAAGTGAAGGAAATGTACTGCTACACTTGTTCTGACATCGTAAAGGAGTTTAATAAACATGACAAAGAACCAGCAAAGTATATTAAACAATGGAAAGGTGTAAAGCCAAAGACTGGTGCACCATACACTTGCGACGTGGGATATGAACGATTCCTTGGACCCGAGGTGTTCTTTAATCCAGAGATATACAGCAATGACTTCACAACTACTTTACCAGCTGTGATAGACAAATGTATTCAGTCTGCACCAATTGACACACGAAGAGCTTTATATAAGAATATAGTGTTGTCCGGAGGTTCAACTATGTTCAAAGATTTCGGAAGAAGGTTACAAAGGGACCTCAAGAAGATTGTTGATGCTCGTGTTCTTGCTAATAACGCTCGTACTGGTGGTGAAATTACGTCTCAACCGGTGGAGGTTAATGTCGTGAGCCATCCTGTCCAGAGGTTTGCAGTTTGGTTTGGAGGCTCTGTGCTTTCATCAACTCCTGAGTTTTTCGCGAGTTGCAGAACGAAAGAGGAGTATGAGGAATATGGAGCAAGCATATGCCGCACGAATCCGGTGTTCAAGGGAATGTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0000904 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005856 GO:0005885 GO:0006996 GO:0007010 GO:0007015 GO:0008150 GO:0009653 GO:0009825 GO:0009888 GO:0009987 GO:0010026 GO:0010090 GO:0015629 GO:0016043 GO:0016049 GO:0030029 GO:0030036 GO:0030154 GO:0032502 GO:0032989 GO:0032991 GO:0040007 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0048468 GO:0048856 GO:0048869 GO:0071840 GO:0090558 GO:0090626 GO:0097435

KEGG Pathways

Metabolic & Signaling

ko03015 ko04138 ko04530 map03015 map04138 map04530

Pfam Domains

Protein Families

Actin

Protein Analysis

427

Amino Acids

47.66

Weight (kDa)

5.43

Isoelectric Point (pI)

40.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Actin	PF00022	7 - 418	9.6e-81	Actin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008021)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13180
fragaria_vesca	FvH4_4g25180 FvH4_4g25180 FvH4_4g25180 FvH4_4g25180 FvH4_4g25180 FvH4_4g25180
malus_domestica	MD13G1105900.v1.1 MD16G1106100.v1.1
prunus_persica	Prupe.1G240300_v2.0.a1
pyrus_communis	pycom13g09190 pycom16g09020
rosa_chinensis	RchiOBHm_Chr4g0432381
rosa_laevigata	RLG00000006848
rosa_multiflora	Rmu_sc0001084.1_g000035
rosa_roxburghii	Rroxscaffold_5G00373830
rosa_rugosa	Rorug04G0258000 Rorug04G0258000 Rorug04G0258000
rosa_samantha	Rh4AG313900 Rh4BG321400 Rh4CG336500 Rh4DG317000
rosa_wichuraiana	Rw4G027280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	614, 815
AccI	GTMKAC	1 cut(s)	50
AccII	CGCG	2 cut(s)	235, 1202
AccIII	TCCGGA	1 cut(s)	992
AciI	CCGC	6 cut(s)	21, 68, 191, 235, 652, 1252
AclWI	GGATC	4 cut(s)	12, 201, 341, 363
AcsI	RAATTY	1 cut(s)	420
AfaI	GTAC	4 cut(s)	247, 561, 719, 1087
AfiI	CCNNNNNNNGG	2 cut(s)	614, 815
AgeI	ACCGGT	1 cut(s)	1111
AgsI	TTSAA	4 cut(s)	130, 1002, 1012, 1270
AjiI	CACGTC	1 cut(s)	838
AjnI	CCWGG	1 cut(s)	445
AjuI	GAANNNNNNNTTGG	2 cut(s)	840, 872
AluBI	AGCT	4 cut(s)	221, 591, 920, 968
AluI	AGCT	4 cut(s)	221, 591, 920, 968
Alw21I	GWGCWC	1 cut(s)	823
Alw26I	GTCTC	2 cut(s)	425, 1110
Alw44I	GTGCAC	1 cut(s)	819
AlwI	GGATC	4 cut(s)	12, 201, 341, 363
Ama87I	CYCGRG	1 cut(s)	863
Aor13HI	TCCGGA	1 cut(s)	992
ApaLI	GTGCAC	1 cut(s)	819
ApeKI	GCWGC	3 cut(s)	188, 316, 485
ApoI	RAATTY	1 cut(s)	420
ArsI	GACNNNNNNTTYG	2 cut(s)	221, 253
AsiGI	ACCGGT	1 cut(s)	1111
AspS9I	GGNCC	2 cut(s)	860, 1039
AsuHPI	GGTGA	3 cut(s)	619, 674, 1106
AvaI	CYCGRG	1 cut(s)	863
AvaII	GGWCC	2 cut(s)	860, 1039
AxyI	CCTNAGG	1 cut(s)	351
BaeGI	GKGCMC	1 cut(s)	823
BamHI	GGATCC	1 cut(s)	4
BarI	GAAGNNNNNNTAC	2 cut(s)	701, 733
BauI	CACGAG	1 cut(s)	1062
Bbv12I	GWGCWC	1 cut(s)	823
BbvI	GCAGC	3 cut(s)	175, 328, 472
BccI	CCATC	2 cut(s)	536, 1143
BciT130I	CCWGG	1 cut(s)	447
BcoDI	GTCTC	2 cut(s)	425, 1110
BfaI	CTAG	1 cut(s)	240
BisI	GCNGC	4 cut(s)	189, 317, 486, 1252
BlsI	GCNGC	4 cut(s)	190, 318, 487, 1253
BmcAI	AGTACT	1 cut(s)	247
Bme1390I	CCNGG	1 cut(s)	447
Bme18I	GGWCC	2 cut(s)	860, 1039
BmeT110I	CYCGRG	1 cut(s)	863
BmgBI	CACGTC	1 cut(s)	838
BmgT120I	GGNCC	2 cut(s)	860, 1039
BmiI	GGNNCC	3 cut(s)	6, 862, 1040
BmrFI	CCNGG	1 cut(s)	447
BmrI	ACTGGG	1 cut(s)	54
BmsI	GCATC	2 cut(s)	286, 1048
BmuI	ACTGGG	1 cut(s)	54
BpmI	CTGGAG	2 cut(s)	201, 435
BpuEI	CTTGAG	1 cut(s)	1028
Bsa29I	ATCGAT	1 cut(s)	602
BsaJI	CCNNGG	3 cut(s)	446, 856, 864
BsaWI	WCCGGW	3 cut(s)	992, 1111, 1261
BsaXI	ACNNNNNCTCC	2 cut(s)	1158, 1188
Bsc4I	CCNNNNNNNGG	2 cut(s)	614, 815
Bse118I	RCCGGY	1 cut(s)	1111
Bse1I	ACTGG	4 cut(s)	49, 418, 820, 1093
Bse21I	CCTNAGG	1 cut(s)	351
Bse3DI	GCAATG	2 cut(s)	456, 901
BseAI	TCCGGA	1 cut(s)	992
BseBI	CCWGG	1 cut(s)	447
BseCI	ATCGAT	1 cut(s)	602
BseDI	CCNNGG	3 cut(s)	446, 856, 864
BseGI	GGATG	2 cut(s)	301, 1135
BseLI	CCNNNNNNNGG	2 cut(s)	614, 815
BseMI	GCAATG	2 cut(s)	456, 901
BseMII	CTCAG	3 cut(s)	182, 342, 1182
BseNI	ACTGG	4 cut(s)	49, 418, 820, 1093
BseRI	GAGGAG	2 cut(s)	381, 1235
BseSI	GKGCMC	1 cut(s)	823
BseXI	GCAGC	3 cut(s)	175, 328, 472
BsgI	GTGCAG	1 cut(s)	930
Bsh1236I	CGCG	2 cut(s)	235, 1202
BshTI	ACCGGT	1 cut(s)	1111
BshVI	ATCGAT	1 cut(s)	602
BsiHKAI	GWGCWC	1 cut(s)	823
BsiHKCI	CYCGRG	1 cut(s)	863
BsiSI	CCGG	3 cut(s)	993, 1112, 1262
BslFI	GGGAC	1 cut(s)	1052
BslI	CCNNNNNNNGG	2 cut(s)	614, 815
BsmAI	GTCTC	2 cut(s)	425, 1110
BsmBI	CGTCTC	1 cut(s)	1110
BsmFI	GGGAC	1 cut(s)	1052
BsoBI	CYCGRG	1 cut(s)	863
Bsp1286I	GDGCHC	1 cut(s)	823
Bsp13I	TCCGGA	1 cut(s)	992
Bsp143I	GATC	4 cut(s)	4, 193, 346, 355
Bsp68I	TCGCGA	1 cut(s)	1202
BspACI	CCGC	6 cut(s)	21, 68, 191, 235, 652, 1252
BspCNI	CTCAG	3 cut(s)	181, 343, 1183
BspDI	ATCGAT	1 cut(s)	602
BspEI	TCCGGA	1 cut(s)	992
BspFNI	CGCG	2 cut(s)	235, 1202
BspLI	GGNNCC	3 cut(s)	6, 862, 1040
BspPI	GGATC	4 cut(s)	12, 201, 341, 363
BspQI	GCTCTTC	1 cut(s)	958
BsrDI	GCAATG	2 cut(s)	456, 901
BsrFI	RCCGGY	1 cut(s)	1111
BsrI	ACTGG	4 cut(s)	49, 418, 820, 1093
BssAI	RCCGGY	1 cut(s)	1111
BssECI	CCNNGG	3 cut(s)	446, 856, 864
BssMI	GATC	4 cut(s)	4, 193, 346, 355
BssNAI	GTATAC	1 cut(s)	51
BssSI	CACGAG	1 cut(s)	1062
BssT1I	CCWWGG	1 cut(s)	856
Bst1107I	GTATAC	1 cut(s)	51
Bst2BI	CACGAG	1 cut(s)	1062
Bst2UI	CCWGG	1 cut(s)	447
Bst4CI	ACNGT	1 cut(s)	103
Bst6I	CTCTTC	1 cut(s)	958
BstAPI	GCANNNNNTGC	2 cut(s)	485, 649
BstC8I	GCNNGC	3 cut(s)	490, 616, 1243
BstDEI	CTNAG	4 cut(s)	150, 168, 351, 1191
BstF5I	GGATG	2 cut(s)	301, 1135
BstFNI	CGCG	2 cut(s)	235, 1202
BstKTI	GATC	4 cut(s)	7, 196, 349, 358
BstMAI	GTCTC	2 cut(s)	425, 1110
BstMBI	GATC	4 cut(s)	4, 193, 346, 355
BstMWI	GCNNNNNNNGC	6 cut(s)	169, 185, 485, 649, 1079, 1251
BstNI	CCWGG	1 cut(s)	447
BstSCI	CCNGG	1 cut(s)	445
BstSLI	GKGCMC	1 cut(s)	823
BstUI	CGCG	2 cut(s)	235, 1202
BstV1I	GCAGC	3 cut(s)	175, 328, 472
BstX2I	RGATCY	2 cut(s)	4, 193
BstYI	RGATCY	2 cut(s)	4, 193
BstZ17I	GTATAC	1 cut(s)	51
Bsu15I	ATCGAT	1 cut(s)	602
Bsu36I	CCTNAGG	1 cut(s)	351
BsuTUI	ATCGAT	1 cut(s)	602
BtrI	CACGTC	1 cut(s)	838
BtsCI	GGATG	2 cut(s)	301, 1135
BtsI	GCAGTG	1 cut(s)	326
BtsIMutI	CAGTG	1 cut(s)	326
BtuMI	TCGCGA	1 cut(s)	1202
Cac8I	GCNNGC	3 cut(s)	490, 616, 1243
Cfr10I	RCCGGY	1 cut(s)	1111
Cfr13I	GGNCC	2 cut(s)	860, 1039
ClaI	ATCGAT	1 cut(s)	602
Csp6I	GTAC	4 cut(s)	246, 560, 718, 1086
CspAI	ACCGGT	1 cut(s)	1111
CviAII	CATG	5 cut(s)	84, 275, 554, 649, 761
CviQI	GTAC	4 cut(s)	246, 560, 718, 1086
DdeI	CTNAG	4 cut(s)	150, 168, 351, 1191
DpnI	GATC	4 cut(s)	6, 195, 348, 357
DpnII	GATC	4 cut(s)	4, 193, 346, 355
Eam1104I	CTCTTC	1 cut(s)	958
EarI	CTCTTC	1 cut(s)	958
Eco130I	CCWWGG	1 cut(s)	856
Eco47I	GGWCC	2 cut(s)	860, 1039
Eco81I	CCTNAGG	1 cut(s)	351
Eco88I	CYCGRG	1 cut(s)	863
EcoO109I	RGGNCCY	1 cut(s)	1039
EcoRII	CCWGG	1 cut(s)	445
EcoT14I	CCWWGG	1 cut(s)	856
ErhI	CCWWGG	1 cut(s)	856
Esp3I	CGTCTC	1 cut(s)	1110
FaeI	CATG	5 cut(s)	87, 278, 557, 652, 764
FaqI	GGGAC	1 cut(s)	1052
FatI	CATG	5 cut(s)	83, 274, 553, 648, 760
FauI	CCCGC	3 cut(s)	28, 61, 645
FauNDI	CATATG	1 cut(s)	1247
FblI	GTMKAC	1 cut(s)	50
Fnu4HI	GCNGC	4 cut(s)	189, 317, 486, 1252
FokI	GGATG	2 cut(s)	308, 1122
Fsp4HI	GCNGC	4 cut(s)	189, 317, 486, 1252
FspBI	CTAG	1 cut(s)	240
GluI	GCNGC	4 cut(s)	189, 317, 486, 1252
GsuI	CTGGAG	2 cut(s)	201, 435
HapII	CCGG	3 cut(s)	993, 1112, 1262
Hin1II	CATG	5 cut(s)	87, 278, 557, 652, 764
HinfI	GANTC	6 cut(s)	119, 130, 604, 683, 852, 1258
HpaII	CCGG	3 cut(s)	993, 1112, 1262
HphI	GGTGA	3 cut(s)	619, 674, 1106
Hpy166II	GTNNAC	3 cut(s)	51, 115, 821
Hpy188I	TCNGA	3 cut(s)	9, 736, 1022
Hpy8I	GTNNAC	3 cut(s)	51, 115, 821
Hpy99I	CGWCG	1 cut(s)	839
HpyAV	CCTTC	3 cut(s)	566, 703, 1020
HpyCH4III	ACNGT	1 cut(s)	103
HpyCH4IV	ACGT	2 cut(s)	837, 1103
HpyCH4V	TGCA	7 cut(s)	110, 479, 569, 821, 947, 1154, 1209
HpyF10VI	GCNNNNNNNGC	6 cut(s)	169, 185, 485, 649, 1079, 1251
HpyF3I	CTNAG	4 cut(s)	150, 168, 351, 1191
HpySE526I	ACGT	2 cut(s)	837, 1103
Hsp92II	CATG	5 cut(s)	87, 278, 557, 652, 764
Kpn2I	TCCGGA	1 cut(s)	992
Kzo9I	GATC	4 cut(s)	4, 193, 346, 355
LguI	GCTCTTC	1 cut(s)	958
LmnI	GCTCC	2 cut(s)	588, 1238
Lsp1109I	GCAGC	3 cut(s)	175, 328, 472
LweI	GCATC	2 cut(s)	286, 1048
MaeI	CTAG	1 cut(s)	240
MaeII	ACGT	2 cut(s)	837, 1103
MaeIII	GTNAC	2 cut(s)	625, 1029
MalI	GATC	4 cut(s)	6, 195, 348, 357
MboI	GATC	4 cut(s)	4, 193, 346, 355
MboII	GAAGA	7 cut(s)	138, 248, 359, 692, 975, 1035, 1060
MfeI	CAATTG	3 cut(s)	267, 609, 951
MflI	RGATCY	2 cut(s)	4, 193
MhlI	GDGCHC	1 cut(s)	823
MluCI	AATT	6 cut(s)	267, 420, 466, 609, 951, 1098
MlyI	GAGTC	1 cut(s)	128
MmeI	TCCRAC	2 cut(s)	32, 517
MroI	TCCGGA	1 cut(s)	992
MseI	TTAA	7 cut(s)	330, 438, 465, 753, 786, 876, 1122
MslI	CAYNNNNRTG	1 cut(s)	505
MspA1I	CMGCKG	1 cut(s)	920
MspI	CCGG	3 cut(s)	993, 1112, 1262
MspR9I	CCNGG	1 cut(s)	447
MunI	CAATTG	3 cut(s)	267, 609, 951
MvaI	CCWGG	1 cut(s)	447
MvnI	CGCG	2 cut(s)	235, 1202
MwoI	GCNNNNNNNGC	6 cut(s)	169, 185, 485, 649, 1079, 1251
NdeI	CATATG	1 cut(s)	1247
NdeII	GATC	4 cut(s)	4, 193, 346, 355
NlaIII	CATG	5 cut(s)	87, 278, 557, 652, 764
NlaIV	GGNNCC	3 cut(s)	6, 862, 1040
NmuCI	GTSAC	1 cut(s)	625
NruI	TCGCGA	1 cut(s)	1202
PciSI	GCTCTTC	1 cut(s)	958
PfeI	GAWTC	5 cut(s)	130, 604, 683, 852, 1258
PflMI	CCANNNNNTGG	2 cut(s)	614, 815
PinAI	ACCGGT	1 cut(s)	1111
PkrI	GCNGC	4 cut(s)	190, 318, 487, 1253
PleI	GAGTC	1 cut(s)	127
PpsI	GAGTC	1 cut(s)	127
PpuMI	RGGWCCY	1 cut(s)	1039
Psp5II	RGGWCCY	1 cut(s)	1039
Psp6I	CCWGG	1 cut(s)	445
PspGI	CCWGG	1 cut(s)	445
PspN4I	GGNNCC	3 cut(s)	6, 862, 1040
PspPI	GGNCC	2 cut(s)	860, 1039
PspPPI	RGGWCCY	1 cut(s)	1039
PsrI	GAACNNNNNNTAC	2 cut(s)	34, 66
PsuI	RGATCY	2 cut(s)	4, 193
PvuII	CAGCTG	1 cut(s)	920
RruI	TCGCGA	1 cut(s)	1202
RsaI	GTAC	4 cut(s)	247, 561, 719, 1087
RsaNI	GTAC	4 cut(s)	246, 560, 718, 1086
RseI	CAYNNNNRTG	1 cut(s)	505
SapI	GCTCTTC	1 cut(s)	958
SaqAI	TTAA	7 cut(s)	330, 438, 465, 753, 786, 876, 1122
SatI	GCNGC	4 cut(s)	189, 317, 486, 1252
Sau3AI	GATC	4 cut(s)	4, 193, 346, 355
Sau96I	GGNCC	2 cut(s)	860, 1039
ScaI	AGTACT	1 cut(s)	247
SchI	GAGTC	1 cut(s)	128
ScrFI	CCNGG	1 cut(s)	447
SduI	GDGCHC	1 cut(s)	823
SfaNI	GCATC	2 cut(s)	286, 1048
SinI	GGWCC	2 cut(s)	860, 1039
SmiMI	CAYNNNNRTG	1 cut(s)	505
SmlI	CTYRAG	1 cut(s)	1043
SmoI	CTYRAG	1 cut(s)	1043
Sse9I	AATT	6 cut(s)	267, 420, 466, 609, 951, 1098
SsiI	CCGC	6 cut(s)	21, 68, 191, 235, 652, 1252
SspMI	CTAG	1 cut(s)	240
StyD4I	CCNGG	1 cut(s)	445
StyI	CCWWGG	1 cut(s)	856
TaaI	ACNGT	1 cut(s)	103
TaiI	ACGT	2 cut(s)	840, 1106
TaqI	TCGA	6 cut(s)	16, 33, 198, 403, 602, 690
TasI	AATT	6 cut(s)	267, 420, 466, 609, 951, 1098
TatI	WGTACW	2 cut(s)	245, 717
TauI	GCSGC	1 cut(s)	1254
TfiI	GAWTC	5 cut(s)	130, 604, 683, 852, 1258
Tru1I	TTAA	7 cut(s)	330, 438, 465, 753, 786, 876, 1122
Tru9I	TTAA	7 cut(s)	330, 438, 465, 753, 786, 876, 1122
TscAI	CASTG	1 cut(s)	326
TseFI	GTSAC	1 cut(s)	625
TseI	GCWGC	3 cut(s)	188, 316, 485
Tsp45I	GTSAC	1 cut(s)	625
TspDTI	ATGAA	5 cut(s)	231, 248, 675, 861, 1170
TspRI	CASTG	1 cut(s)	326
Van91I	CCANNNNNTGG	2 cut(s)	614, 815
VneI	GTGCAC	1 cut(s)	819
VpaK11BI	GGWCC	2 cut(s)	860, 1039
XapI	RAATTY	1 cut(s)	420
XmiI	GTMKAC	1 cut(s)	50
XspI	CTAG	1 cut(s)	240
ZrmI	AGTACT	1 cut(s)	247

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.