Prupe.1G240300_v2.0.a1

Belongs to the actin family

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
Physical Location & Seq
Reverse (-)
25426807 .. 25431563
4757 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G240300.1

Sequence Viewer

Length: 1284 bp
ATGGACCCGGCTGCTCGCCCCGCTGTAGTTATCGACAATGGCAGTGGGTATACTAAGATGGGGTTCGCGGGTAATGTAGAGCCGTGTTACATTGTTCCGACTGTAGTTGCCTTAAACGAATCGTTTCTGAACCCGGCCAGAACCTCCTCCAAGGCTGGTTGGCTAGCGCAGCACAATGCTGGCGTAATGGCTGATCTTGATTTCTTTATAGGGGATGAGGCCCTGGAAAGATCTCGATCTAGTACAACTTACAATCTAAGCTATCCCGTTCGCCAGGGTCAGGTCGAGAATTGGGATTCAATGGAGCGGTTTTGGCAGCAATGCATATTCAACTATTTGCGTTGTGATCCTGAAGACCACTATTTTCTTTTAACTGAGAGTCCGCTTACTGCCCCGGAGAGTCGTGAGTATACTGGCGAAATTATGTTTGAGACTTTCAATGTTCCTGGCCTTTACATTGCCGTGAATTCGGTACTTGCTCTTGCAGCTGGTTACACAACGTCTAAGTGTGAGATGACAGGGGTTGTGGTAGATGTTGGAGATGGAGCAACTCATGTTGTACCTGTTGCAGAAGGTTATGTTATTGGGAGCAGCATCAAGTCAGTTCCTATTGCCGGGAAAGATGTAACTCTCTTTGTCCAGCAGCTTATGCGGGAAAGAGGAGAGAATGTGCCACCAGAAGACTCCTTTGACGTAGCTCGCAAAGTGAAGGAAATGTATTGCTATACTAGTTCTGACATTGTCAAGGAGTTCAATAAGCACGATAAAGAACCATCCAAGTATATTAAGCAATGGAGAGGCATTAAACCAAAGACAGGCGCACCTTACTCTTGTGACATTGGCTATGAACGATTTCTTGGTCCAGAGGTTTTCTTTAATCCTGAGATTTATAGCAATGACTTCACCACTCCCTTACCAGCTGTAATTGACAAGTGTATTCAGTCCGCGCCAATTGACACTAGGAGGTCTTTGTATAAGAATATAGTGTTGTCCGGAGGTTCAACCATGTTCAAGGACTTCCACAGGAGGTTGCAACGGGATATAAAGAAGATTGTCGATGCCCGGCTTCTTGCATCTGAAGCTCGAGTTGGTGGGGAATTAAAATCACAGCCAGTGGAAGTAAATGTTGTTAGTCATCCCATCCAGAGATTTGCAGTTTGGTTTGGAGGCTCTGTACTTGCATCCACACCTGAATTCTATGCGGCTTGCCATACAAAAGAAGAGTATGAGGAATATGGTGCGAGCATATGCAGAACAAATCCTGTTTTCAAGGGTATGTATTGA

Protein Analysis

428

Amino Acids

47.7

Weight (kDa)

5.45

Isoelectric Point (pI)

42.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 307
AccI GTMKAC 2 cut(s) 50, 410
AccII CGCG 2 cut(s) 68, 947
AccIII TCCGGA 1 cut(s) 992
AciI CCGC 7 cut(s) 21, 68, 307, 383, 652, 945, 1202
AclWI GGATC 1 cut(s) 341
AcoI YGGCCR 1 cut(s) 135
AcsI RAATTY 2 cut(s) 466, 1193
AcuI CTGAAG 2 cut(s) 372, 1098
AfaI GTAC 4 cut(s) 244, 474, 561, 1176
AfiI CCNNNNNNNGG 3 cut(s) 280, 614, 815
AgsI TTSAA 7 cut(s) 300, 331, 439, 754, 1002, 1012, 1270
AhlI ACTAGT 1 cut(s) 728
AjnI CCWGG 3 cut(s) 222, 273, 445
AjuI GAANNNNNNNTTGG 4 cut(s) 840, 872, 1071, 1103
AluBI AGCT 6 cut(s) 261, 488, 646, 698, 920, 1082
AluI AGCT 6 cut(s) 261, 488, 646, 698, 920, 1082
Alw26I GTCTC 1 cut(s) 425
AlwI GGATC 1 cut(s) 341
Ama87I CYCGRG 1 cut(s) 1083
Aor13HI TCCGGA 1 cut(s) 992
AoxI GGCC 3 cut(s) 135, 219, 448
ApeKI GCWGC 6 cut(s) 11, 169, 316, 485, 591, 643
ApoI RAATTY 2 cut(s) 466, 1193
Asp700I GAANNNNTTC 2 cut(s) 123, 852
AspLEI GCGC 3 cut(s) 169, 821, 949
AspS9I GGNCC 3 cut(s) 4, 220, 860
AsuC2I CCSGG 5 cut(s) 8, 134, 395, 616, 1063
AsuHPI GGTGA 1 cut(s) 895
AsuNHI GCTAGC 1 cut(s) 163
AvaI CYCGRG 1 cut(s) 1083
AvaII GGWCC 2 cut(s) 4, 860
BbsI GAAGAC 2 cut(s) 360, 687
BbvI GCAGC 5 cut(s) 181, 328, 497, 603, 655
BccI CCATC 4 cut(s) 52, 536, 781, 1148
BceAI ACGGC 2 cut(s) 67, 446
BciT130I CCWGG 3 cut(s) 224, 275, 447
BcnI CCSGG 5 cut(s) 8, 134, 395, 616, 1063
BcoDI GTCTC 1 cut(s) 425
BcuI ACTAGT 1 cut(s) 728
BfaI CTAG 4 cut(s) 164, 240, 729, 960
BfmI CTRYAG 2 cut(s) 24, 102
BglII AGATCT 1 cut(s) 230
BisI GCNGC 7 cut(s) 12, 170, 317, 486, 592, 644, 1203
BlsI GCNGC 7 cut(s) 13, 171, 318, 487, 593, 645, 1204
Bme1390I CCNGG 8 cut(s) 8, 134, 224, 275, 395, 447, 616, 1063
Bme18I GGWCC 2 cut(s) 4, 860
BmeT110I CYCGRG 1 cut(s) 1083
BmgT120I GGNCC 3 cut(s) 4, 220, 860
BmiI GGNNCC 1 cut(s) 6
BmrFI CCNGG 8 cut(s) 8, 134, 224, 275, 395, 447, 616, 1063
BmsI GCATC 4 cut(s) 603, 1048, 1082, 1190
BmtI GCTAGC 1 cut(s) 167
BpiI GAAGAC 2 cut(s) 360, 687
BpuMI CCSGG 5 cut(s) 8, 134, 395, 616, 1063
BsaBI GATNNNNATC 1 cut(s) 235
BsaJI CCNNGG 4 cut(s) 150, 222, 274, 393
BsaWI WCCGGW 1 cut(s) 992
BsaXI ACNNNNNCTCC 4 cut(s) 654, 684, 1158, 1188
Bsc4I CCNNNNNNNGG 3 cut(s) 280, 614, 815
Bse1I ACTGG 2 cut(s) 418, 1112
Bse3DI GCAATG 4 cut(s) 326, 456, 797, 901
Bse8I GATNNNNATC 1 cut(s) 235
BseAI TCCGGA 1 cut(s) 992
BseBI CCWGG 3 cut(s) 224, 275, 447
BseDI CCNNGG 4 cut(s) 150, 222, 274, 393
BseGI GGATG 5 cut(s) 220, 773, 1135, 1140, 1181
BseJI GATNNNNATC 1 cut(s) 235
BseLI CCNNNNNNNGG 3 cut(s) 280, 614, 815
BseMI GCAATG 4 cut(s) 326, 456, 797, 901
BseMII CTCAG 2 cut(s) 366, 873
BseNI ACTGG 2 cut(s) 418, 1112
BseRI GAGGAG 2 cut(s) 136, 675
BseXI GCAGC 5 cut(s) 181, 328, 497, 603, 655
Bsh1236I CGCG 2 cut(s) 68, 947
BshFI GGCC 3 cut(s) 137, 221, 450
BsiHKCI CYCGRG 1 cut(s) 1083
BsiSI CCGG 6 cut(s) 8, 134, 395, 615, 993, 1063
BslI CCNNNNNNNGG 3 cut(s) 280, 614, 815
BsmAI GTCTC 1 cut(s) 425
BsnI GGCC 3 cut(s) 137, 221, 450
BsoBI CYCGRG 1 cut(s) 1083
Bsp13I TCCGGA 1 cut(s) 992
Bsp143I GATC 4 cut(s) 193, 230, 236, 346
BspACI CCGC 7 cut(s) 21, 68, 307, 383, 652, 945, 1202
BspANI GGCC 3 cut(s) 137, 221, 450
BspCNI CTCAG 2 cut(s) 367, 874
BspEI TCCGGA 1 cut(s) 992
BspFNI CGCG 2 cut(s) 68, 947
BspLI GGNNCC 1 cut(s) 6
BspOI GCTAGC 1 cut(s) 167
BspPI GGATC 1 cut(s) 341
BsrBI CCGCTC 1 cut(s) 307
BsrDI GCAATG 4 cut(s) 326, 456, 797, 901
BsrI ACTGG 2 cut(s) 418, 1112
BssECI CCNNGG 4 cut(s) 150, 222, 274, 393
BssMI GATC 4 cut(s) 193, 230, 236, 346
BssNAI GTATAC 2 cut(s) 51, 411
BssT1I CCWWGG 1 cut(s) 150
Bst1107I GTATAC 2 cut(s) 51, 411
Bst2UI CCWGG 3 cut(s) 224, 275, 447
Bst4CI ACNGT 1 cut(s) 103
Bst6I CTCTTC 1 cut(s) 1215
BstAPI GCANNNNNTGC 1 cut(s) 649
BstC8I GCNNGC 6 cut(s) 16, 165, 181, 700, 1207, 1243
BstDEI CTNAG 5 cut(s) 54, 257, 375, 504, 882
BstF5I GGATG 5 cut(s) 220, 773, 1135, 1140, 1181
BstFNI CGCG 2 cut(s) 68, 947
BstHHI GCGC 3 cut(s) 169, 821, 949
BstKTI GATC 4 cut(s) 196, 233, 239, 349
BstMAI GTCTC 1 cut(s) 425
BstMBI GATC 4 cut(s) 193, 230, 236, 346
BstMWI GCNNNNNNNGC 6 cut(s) 20, 169, 313, 485, 649, 1079
BstNI CCWGG 3 cut(s) 224, 275, 447
BstSCI CCNGG 8 cut(s) 6, 132, 222, 273, 393, 445, 614, 1061
BstSFI CTRYAG 2 cut(s) 24, 102
BstUI CGCG 2 cut(s) 68, 947
BstV1I GCAGC 5 cut(s) 181, 328, 497, 603, 655
BstV2I GAAGAC 2 cut(s) 360, 687
BstX2I RGATCY 1 cut(s) 230
BstYI RGATCY 1 cut(s) 230
BstZ17I GTATAC 2 cut(s) 51, 411
BsuRI GGCC 3 cut(s) 137, 221, 450
BtsCI GGATG 5 cut(s) 220, 773, 1135, 1140, 1181
BtsI GCAGTG 1 cut(s) 49
BtsIMutI CAGTG 2 cut(s) 49, 1119
Cac8I GCNNGC 6 cut(s) 16, 165, 181, 700, 1207, 1243
CfoI GCGC 3 cut(s) 169, 821, 949
Cfr13I GGNCC 3 cut(s) 4, 220, 860
Csp6I GTAC 4 cut(s) 243, 473, 560, 1175
CspCI CAANNNNNGTGG 2 cut(s) 25, 60
CviAII CATG 2 cut(s) 554, 1006
CviQI GTAC 4 cut(s) 243, 473, 560, 1175
DdeI CTNAG 5 cut(s) 54, 257, 375, 504, 882
DpnI GATC 4 cut(s) 195, 232, 238, 348
DpnII GATC 4 cut(s) 193, 230, 236, 346
EaeI YGGCCR 1 cut(s) 135
Eam1104I CTCTTC 1 cut(s) 1215
EarI CTCTTC 1 cut(s) 1215
Eco130I CCWWGG 1 cut(s) 150
Eco47I GGWCC 2 cut(s) 4, 860
Eco57I CTGAAG 2 cut(s) 372, 1098
Eco88I CYCGRG 1 cut(s) 1083
EcoO109I RGGNCCY 1 cut(s) 220
EcoRI GAATTC 2 cut(s) 466, 1193
EcoRII CCWGG 3 cut(s) 222, 273, 445
EcoT14I CCWWGG 1 cut(s) 150
EcoT22I ATGCAT 1 cut(s) 326
ErhI CCWWGG 1 cut(s) 150
FaeI CATG 2 cut(s) 557, 1009
FatI CATG 2 cut(s) 553, 1005
FauI CCCGC 3 cut(s) 28, 61, 645
FauNDI CATATG 1 cut(s) 1247
FblI GTMKAC 2 cut(s) 50, 410
Fnu4HI GCNGC 7 cut(s) 12, 170, 317, 486, 592, 644, 1203
FokI GGATG 5 cut(s) 227, 760, 1122, 1127, 1168
Fsp4HI GCNGC 7 cut(s) 12, 170, 317, 486, 592, 644, 1203
FspBI CTAG 4 cut(s) 164, 240, 729, 960
GlaI GCGC 3 cut(s) 168, 820, 948
GluI GCNGC 7 cut(s) 12, 170, 317, 486, 592, 644, 1203
HaeIII GGCC 3 cut(s) 137, 221, 450
HapII CCGG 6 cut(s) 8, 134, 395, 615, 993, 1063
HhaI GCGC 3 cut(s) 169, 821, 949
Hin1II CATG 2 cut(s) 557, 1009
Hin6I GCGC 3 cut(s) 167, 819, 947
HinP1I GCGC 3 cut(s) 167, 819, 947
HinfI GANTC 5 cut(s) 119, 296, 379, 400, 683
HpaII CCGG 6 cut(s) 8, 134, 395, 615, 993, 1063
HphI GGTGA 1 cut(s) 895
Hpy166II GTNNAC 2 cut(s) 51, 411
Hpy188I TCNGA 4 cut(s) 99, 129, 736, 1078
Hpy188III TCNNGA 9 cut(s) 197, 234, 286, 350, 404, 863, 881, 993, 1144
Hpy8I GTNNAC 2 cut(s) 51, 411
HpyAV CCTTC 2 cut(s) 566, 703
HpyCH4III ACNGT 1 cut(s) 103
HpyCH4IV ACGT 2 cut(s) 500, 693
HpyCH4V TGCA 8 cut(s) 324, 485, 569, 1033, 1073, 1154, 1181, 1251
HpyF10VI GCNNNNNNNGC 6 cut(s) 20, 169, 313, 485, 649, 1079
HpyF3I CTNAG 5 cut(s) 54, 257, 375, 504, 882
HpySE526I ACGT 2 cut(s) 500, 693
Hsp92II CATG 2 cut(s) 557, 1009
HspAI GCGC 3 cut(s) 167, 819, 947
Kpn2I TCCGGA 1 cut(s) 992
Kzo9I GATC 4 cut(s) 193, 230, 236, 346
LmnI GCTCC 3 cut(s) 304, 545, 588
Lsp1109I GCAGC 5 cut(s) 181, 328, 497, 603, 655
LweI GCATC 4 cut(s) 603, 1048, 1082, 1190
MaeI CTAG 4 cut(s) 164, 240, 729, 960
MaeII ACGT 2 cut(s) 500, 693
MaeIII GTNAC 4 cut(s) 86, 491, 625, 833
MalI GATC 4 cut(s) 195, 232, 238, 348
MbiI CCGCTC 1 cut(s) 307
MboI GATC 4 cut(s) 193, 230, 236, 346
MboII GAAGA 4 cut(s) 365, 692, 1060, 1232
MfeI CAATTG 1 cut(s) 951
MflI RGATCY 1 cut(s) 230
MluCI AATT 7 cut(s) 289, 420, 466, 924, 951, 1097, 1193
MlyI GAGTC 3 cut(s) 388, 409, 677
MmeI TCCRAC 2 cut(s) 122, 517
Mph1103I ATGCAT 1 cut(s) 326
MroI TCCGGA 1 cut(s) 992
MroXI GAANNNNTTC 2 cut(s) 123, 852
MseI TTAA 6 cut(s) 113, 371, 786, 804, 876, 1100
MslI CAYNNNNRTG 1 cut(s) 461
MspA1I CMGCKG 3 cut(s) 23, 488, 920
MspI CCGG 6 cut(s) 8, 134, 395, 615, 993, 1063
MspR9I CCNGG 8 cut(s) 8, 134, 224, 275, 395, 447, 616, 1063
MunI CAATTG 1 cut(s) 951
MvaI CCWGG 3 cut(s) 224, 275, 447
MvnI CGCG 2 cut(s) 68, 947
MwoI GCNNNNNNNGC 6 cut(s) 20, 169, 313, 485, 649, 1079
NciI CCSGG 5 cut(s) 8, 134, 395, 616, 1063
NdeI CATATG 1 cut(s) 1247
NdeII GATC 4 cut(s) 193, 230, 236, 346
NheI GCTAGC 1 cut(s) 163
NlaIII CATG 2 cut(s) 557, 1009
NlaIV GGNNCC 1 cut(s) 6
NmuCI GTSAC 1 cut(s) 833
NsiI ATGCAT 1 cut(s) 326
PaeR7I CTCGAG 1 cut(s) 1083
PdmI GAANNNNTTC 2 cut(s) 123, 852
PfeI GAWTC 2 cut(s) 119, 296
PflFI GACNNNGTC 1 cut(s) 740
PkrI GCNGC 7 cut(s) 13, 171, 318, 487, 593, 645, 1204
PleI GAGTC 3 cut(s) 387, 408, 677
PpsI GAGTC 3 cut(s) 387, 408, 677
Psp6I CCWGG 3 cut(s) 222, 273, 445
PspGI CCWGG 3 cut(s) 222, 273, 445
PspN4I GGNNCC 1 cut(s) 6
PspPI GGNCC 3 cut(s) 4, 220, 860
PspXI VCTCGAGB 1 cut(s) 1083
PsuI RGATCY 1 cut(s) 230
PsyI GACNNNGTC 1 cut(s) 740
PvuII CAGCTG 2 cut(s) 488, 920
RsaI GTAC 4 cut(s) 244, 474, 561, 1176
RsaNI GTAC 4 cut(s) 243, 473, 560, 1175
RseI CAYNNNNRTG 1 cut(s) 461
SaqAI TTAA 6 cut(s) 113, 371, 786, 804, 876, 1100
SatI GCNGC 7 cut(s) 12, 170, 317, 486, 592, 644, 1203
Sau3AI GATC 4 cut(s) 193, 230, 236, 346
Sau96I GGNCC 3 cut(s) 4, 220, 860
SchI GAGTC 3 cut(s) 388, 409, 677
ScrFI CCNGG 8 cut(s) 8, 134, 224, 275, 395, 447, 616, 1063
SfaNI GCATC 4 cut(s) 603, 1048, 1082, 1190
SfcI CTRYAG 2 cut(s) 24, 102
Sfr274I CTCGAG 1 cut(s) 1083
SinI GGWCC 2 cut(s) 4, 860
SlaI CTCGAG 1 cut(s) 1083
SmiMI CAYNNNNRTG 1 cut(s) 461
SmlI CTYRAG 1 cut(s) 1083
SmoI CTYRAG 1 cut(s) 1083
SpeI ACTAGT 1 cut(s) 728
Sse9I AATT 7 cut(s) 289, 420, 466, 924, 951, 1097, 1193
SsiI CCGC 7 cut(s) 21, 68, 307, 383, 652, 945, 1202
SspMI CTAG 4 cut(s) 164, 240, 729, 960
StyD4I CCNGG 8 cut(s) 6, 132, 222, 273, 393, 445, 614, 1061
StyI CCWWGG 1 cut(s) 150
TaaI ACNGT 1 cut(s) 103
TaiI ACGT 2 cut(s) 503, 696
TaqI TCGA 5 cut(s) 33, 235, 285, 1056, 1084
TasI AATT 7 cut(s) 289, 420, 466, 924, 951, 1097, 1193
TatI WGTACW 2 cut(s) 242, 1174
TauI GCSGC 1 cut(s) 1205
TfiI GAWTC 2 cut(s) 119, 296
Tru1I TTAA 6 cut(s) 113, 371, 786, 804, 876, 1100
Tru9I TTAA 6 cut(s) 113, 371, 786, 804, 876, 1100
TscAI CASTG 2 cut(s) 49, 1119
TseFI GTSAC 1 cut(s) 833
TseI GCWGC 6 cut(s) 11, 169, 316, 485, 591, 643
Tsp45I GTSAC 1 cut(s) 833
TspDTI ATGAA 1 cut(s) 861
TspRI CASTG 2 cut(s) 49, 1119
Tth111I GACNNNGTC 1 cut(s) 740
VpaK11BI GGWCC 2 cut(s) 4, 860
XapI RAATTY 2 cut(s) 466, 1193
XhoI CTCGAG 1 cut(s) 1083
XmiI GTMKAC 2 cut(s) 50, 410
XmnI GAANNNNTTC 2 cut(s) 123, 852
XspI CTAG 4 cut(s) 164, 240, 729, 960
Zsp2I ATGCAT 1 cut(s) 326
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.