Rmu_sc0001084.1_g000035

Belongs to the actin family

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001084.1
Physical Location & Seq
Forward (+)
141591 .. 145787
4197 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001084.1_g000035.1.cds

Sequence Viewer

Length: 1359 bp
atggggttcgccggaaacgtcgaatccaaactcaacttcaattccaatcccaatcccaatcccaatcttcttctcatggaccctgcctcccgccccgcagtcgtcattgacaacggcaccgggtatactaagatggggttcgccggaaacgtcgagccgtgttacattgtccccactgtagttgctgtcaacgaatcgtttctgaaccaatcgaggagcacctccaaggcgagctggatagcgcagcacaatgccggtgtgatggctgatcttgatttcttcataggggatgaggctttggagaagtctcgatccagctctacttataatttgagctatccgatcagtcatggccaggtggacaattgggattcaatggagcgcttttggcagcagtgtatatttaactatttgcgttgtgatcctgaagatcattactttcttttgactgagagcccgcttactgccccggagagccgggagtacaccggcgaaattatgtttgagactttcaacgttcctggcctttacattgctgtgaattcggtacttgctctcgcagctggctacactacctctaagtgtgagatgacaggtgttgtagtagatgttggagatggggcaagtcatgttgttcctgttgcagaaggttatgtgattgggagcagcatcaagtcagttccgattgccgggagagatgtcactctctttgttcaacagcttatgcgggaaagaggagagaacgtgccaccagaagactcctttgatgtagcgcgcaaagtgaaggaaatgtattgctatactagttctgacattgtcaaggagttcaataagcacgataaagaaccatccaaatatattaagcaatggaaaggcattaaaccaaagacaggggcaccctacacttgtgatattggctatgaacgatttcttggaccagaggtattttttaatcctgagatttatagcagcgatttcaccactccattaccagttgtaattgacaagtgtattcagtccgccccaattgacaccaggaggtctttgtataagaatatcgtgttgtctggaggttcaacgatgttcaaggacttccatagaaggctgcaacgagatataaagaagattgtggatgcccggcttcgtgcatctgaagctcgagtcggtggagaactgaaatcacatccagtggaagtaaatgtggtaagccatcccatccagagatatgcagtttggtttggaggctccgtacttgcatccacgcctgaattctttggggcttgccatactaaagcagagtatgaggaatatggggcaagcatctgtagaacaaatcctgttttcaaggggatgtactga

Protein Analysis

452

Amino Acids

50.36

Weight (kDa)

5.7

Isoelectric Point (pI)

36.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 327
AccB1I GGYRCC 2 cut(s) 116, 895
AccI GTMKAC 1 cut(s) 125
AccII CGCG 1 cut(s) 775
AciI CCGC 5 cut(s) 91, 96, 458, 727, 1020
AclI AACGTT 1 cut(s) 516
AclWI GGATC 2 cut(s) 306, 416
AcoI YGGCCR 1 cut(s) 352
AcsI RAATTY 2 cut(s) 541, 1268
AcuI CTGAAG 2 cut(s) 447, 1173
AfaI GTAC 4 cut(s) 485, 549, 1251, 1355
AfeI AGCGCT 1 cut(s) 383
AfiI CCNNNNNNNGG 2 cut(s) 689, 890
AgsI TTSAA 8 cut(s) 40, 375, 514, 716, 829, 1077, 1087, 1345
AhlI ACTAGT 1 cut(s) 803
AjnI CCWGG 3 cut(s) 354, 520, 1034
AjuI GAANNNNNNNTTGG 4 cut(s) 20, 52, 915, 947
AluBI AGCT 6 cut(s) 234, 318, 336, 563, 721, 1157
AluI AGCT 6 cut(s) 234, 318, 336, 563, 721, 1157
Alw21I GWGCWC 1 cut(s) 221
Alw26I GTCTC 2 cut(s) 312, 500
AlwI GGATC 2 cut(s) 306, 416
Ama87I CYCGRG 1 cut(s) 1158
Aor51HI AGCGCT 1 cut(s) 383
AoxI GGCC 2 cut(s) 352, 523
ApeKI GCWGC 6 cut(s) 244, 391, 560, 666, 969, 1105
ApoI RAATTY 2 cut(s) 541, 1268
Asp700I GAANNNNTTC 2 cut(s) 198, 927
AspLEI GCGC 4 cut(s) 244, 384, 775, 777
AspS9I GGNCC 2 cut(s) 79, 935
AsuC2I CCSGG 5 cut(s) 121, 470, 479, 691, 1138
AsuHPI GGTGA 1 cut(s) 970
AvaI CYCGRG 1 cut(s) 1158
AvaII GGWCC 2 cut(s) 79, 935
BaeGI GKGCMC 1 cut(s) 898
BalI TGGCCA 1 cut(s) 354
BanI GGYRCC 2 cut(s) 116, 895
BanII GRGCYC 1 cut(s) 458
BbsI GAAGAC 1 cut(s) 762
Bbv12I GWGCWC 1 cut(s) 221
BbvI GCAGC 6 cut(s) 256, 403, 572, 678, 981, 1092
BccI CCATC 6 cut(s) 127, 256, 611, 856, 1218, 1223
BceAI ACGGC 2 cut(s) 130, 142
BciT130I CCWGG 3 cut(s) 356, 522, 1036
BcnI CCSGG 5 cut(s) 121, 470, 479, 691, 1138
BcoDI GTCTC 2 cut(s) 312, 500
BcuI ACTAGT 1 cut(s) 803
BfaI CTAG 1 cut(s) 804
BfmI CTRYAG 2 cut(s) 177, 1324
BfoI RGCGCY 1 cut(s) 385
BisI GCNGC 6 cut(s) 245, 392, 561, 667, 970, 1106
BlsI GCNGC 6 cut(s) 246, 393, 562, 668, 971, 1107
Bme1390I CCNGG 8 cut(s) 121, 356, 470, 479, 522, 691, 1036, 1138
Bme18I GGWCC 2 cut(s) 79, 935
BmeT110I CYCGRG 1 cut(s) 1158
BmgT120I GGNCC 2 cut(s) 79, 935
BmiI GGNNCC 4 cut(s) 81, 118, 897, 1246
BmrFI CCNGG 8 cut(s) 121, 356, 470, 479, 522, 691, 1036, 1138
BmsI GCATC 5 cut(s) 678, 1123, 1157, 1265, 1329
BpiI GAAGAC 1 cut(s) 762
BpmI CTGGAG 1 cut(s) 1089
BpuMI CCSGG 5 cut(s) 121, 470, 479, 691, 1138
BsaJI CCNNGG 2 cut(s) 225, 468
BsaXI ACNNNNNCTCC 6 cut(s) 71, 101, 729, 759, 1233, 1263
Bsc4I CCNNNNNNNGG 2 cut(s) 689, 890
Bse118I RCCGGY 2 cut(s) 254, 488
Bse1I ACTGG 2 cut(s) 992, 1187
Bse3DI GCAATG 2 cut(s) 531, 872
BseBI CCWGG 3 cut(s) 356, 522, 1036
BseDI CCNNGG 2 cut(s) 225, 468
BseGI GGATG 8 cut(s) 295, 848, 1138, 1183, 1210, 1215, 1256, 1356
BseLI CCNNNNNNNGG 2 cut(s) 689, 890
BseMI GCAATG 2 cut(s) 531, 872
BseMII CTCAG 2 cut(s) 441, 948
BseNI ACTGG 2 cut(s) 992, 1187
BsePI GCGCGC 1 cut(s) 773
BseRI GAGGAG 2 cut(s) 229, 750
BseSI GKGCMC 1 cut(s) 898
BseXI GCAGC 6 cut(s) 256, 403, 572, 678, 981, 1092
Bsh1236I CGCG 1 cut(s) 775
BshFI GGCC 2 cut(s) 354, 525
BshNI GGYRCC 2 cut(s) 116, 895
BsiHKAI GWGCWC 1 cut(s) 221
BsiHKCI CYCGRG 1 cut(s) 1158
BsiSI CCGG 9 cut(s) 12, 120, 144, 255, 470, 478, 489, 690, 1138
BslFI GGGAC 1 cut(s) 155
BslI CCNNNNNNNGG 2 cut(s) 689, 890
BsmAI GTCTC 2 cut(s) 312, 500
BsmFI GGGAC 1 cut(s) 155
BsnI GGCC 2 cut(s) 354, 525
BsoBI CYCGRG 1 cut(s) 1158
Bsp1286I GDGCHC 3 cut(s) 221, 458, 898
Bsp143I GATC 5 cut(s) 268, 311, 342, 421, 430
BspACI CCGC 5 cut(s) 91, 96, 458, 727, 1020
BspANI GGCC 2 cut(s) 354, 525
BspCNI CTCAG 2 cut(s) 442, 949
BspFNI CGCG 1 cut(s) 775
BspLI GGNNCC 4 cut(s) 81, 118, 897, 1246
BspPI GGATC 2 cut(s) 306, 416
BspT107I GGYRCC 2 cut(s) 116, 895
BsrDI GCAATG 2 cut(s) 531, 872
BsrFI RCCGGY 2 cut(s) 254, 488
BsrI ACTGG 2 cut(s) 992, 1187
BssAI RCCGGY 2 cut(s) 254, 488
BssECI CCNNGG 2 cut(s) 225, 468
BssHII GCGCGC 1 cut(s) 773
BssMI GATC 5 cut(s) 268, 311, 342, 421, 430
BssNAI GTATAC 1 cut(s) 126
BssT1I CCWWGG 1 cut(s) 225
Bst1107I GTATAC 1 cut(s) 126
Bst2UI CCWGG 3 cut(s) 356, 522, 1036
Bst4CI ACNGT 1 cut(s) 178
BstC8I GCNNGC 6 cut(s) 232, 458, 565, 775, 1282, 1318
BstDEI CTNAG 4 cut(s) 129, 450, 579, 957
BstF5I GGATG 8 cut(s) 295, 848, 1138, 1183, 1210, 1215, 1256, 1356
BstFNI CGCG 1 cut(s) 775
BstH2I RGCGCY 1 cut(s) 385
BstHHI GCGC 4 cut(s) 244, 384, 775, 777
BstKTI GATC 5 cut(s) 271, 314, 345, 424, 433
BstMAI GTCTC 2 cut(s) 312, 500
BstMBI GATC 5 cut(s) 268, 311, 342, 421, 430
BstMWI GCNNNNNNNGC 3 cut(s) 388, 560, 1154
BstNI CCWGG 3 cut(s) 356, 522, 1036
BstSCI CCNGG 8 cut(s) 119, 354, 468, 477, 520, 689, 1034, 1136
BstSFI CTRYAG 2 cut(s) 177, 1324
BstSLI GKGCMC 1 cut(s) 898
BstUI CGCG 1 cut(s) 775
BstV1I GCAGC 6 cut(s) 256, 403, 572, 678, 981, 1092
BstV2I GAAGAC 1 cut(s) 762
BstZ17I GTATAC 1 cut(s) 126
BsuRI GGCC 2 cut(s) 354, 525
BtsCI GGATG 8 cut(s) 295, 848, 1138, 1183, 1210, 1215, 1256, 1356
BtsI GCAGTG 1 cut(s) 401
BtsIMutI CAGTG 3 cut(s) 174, 401, 1194
Cac8I GCNNGC 6 cut(s) 232, 458, 565, 775, 1282, 1318
CfoI GCGC 4 cut(s) 244, 384, 775, 777
Cfr10I RCCGGY 2 cut(s) 254, 488
Cfr13I GGNCC 2 cut(s) 79, 935
Csp6I GTAC 4 cut(s) 484, 548, 1250, 1354
CspCI CAANNNNNGTGG 2 cut(s) 163, 198
CviAII CATG 3 cut(s) 76, 350, 629
CviQI GTAC 4 cut(s) 484, 548, 1250, 1354
DdeI CTNAG 4 cut(s) 129, 450, 579, 957
DpnI GATC 5 cut(s) 270, 313, 344, 423, 432
DpnII GATC 5 cut(s) 268, 311, 342, 421, 430
EaeI YGGCCR 1 cut(s) 352
EciI GGCGGA 1 cut(s) 1009
Eco130I CCWWGG 1 cut(s) 225
Eco24I GRGCYC 1 cut(s) 458
Eco47I GGWCC 2 cut(s) 79, 935
Eco47III AGCGCT 1 cut(s) 383
Eco57I CTGAAG 2 cut(s) 447, 1173
Eco88I CYCGRG 1 cut(s) 1158
EcoRI GAATTC 2 cut(s) 541, 1268
EcoRII CCWGG 3 cut(s) 354, 520, 1034
EcoT14I CCWWGG 1 cut(s) 225
EcoT38I GRGCYC 1 cut(s) 458
ErhI CCWWGG 1 cut(s) 225
FaeI CATG 3 cut(s) 79, 353, 632
FaqI GGGAC 1 cut(s) 155
FatI CATG 3 cut(s) 75, 349, 628
FauI CCCGC 4 cut(s) 98, 103, 465, 720
FblI GTMKAC 1 cut(s) 125
Fnu4HI GCNGC 6 cut(s) 245, 392, 561, 667, 970, 1106
FokI GGATG 7 cut(s) 302, 835, 1145, 1170, 1197, 1202, 1243
FriOI GRGCYC 1 cut(s) 458
Fsp4HI GCNGC 6 cut(s) 245, 392, 561, 667, 970, 1106
FspBI CTAG 1 cut(s) 804
GlaI GCGC 4 cut(s) 243, 383, 774, 776
GluI GCNGC 6 cut(s) 245, 392, 561, 667, 970, 1106
GsuI CTGGAG 1 cut(s) 1089
HaeII RGCGCY 1 cut(s) 385
HaeIII GGCC 2 cut(s) 354, 525
HapII CCGG 9 cut(s) 12, 120, 144, 255, 470, 478, 489, 690, 1138
HhaI GCGC 4 cut(s) 244, 384, 775, 777
Hin1II CATG 3 cut(s) 79, 353, 632
Hin6I GCGC 4 cut(s) 242, 382, 773, 775
HinP1I GCGC 4 cut(s) 242, 382, 773, 775
HincII GTYRAC 1 cut(s) 190
HindII GTYRAC 1 cut(s) 190
HinfI GANTC 5 cut(s) 23, 194, 371, 758, 1161
HpaII CCGG 9 cut(s) 12, 120, 144, 255, 470, 478, 489, 690, 1138
HphI GGTGA 1 cut(s) 970
Hpy166II GTNNAC 4 cut(s) 126, 190, 361, 486
Hpy188I TCNGA 5 cut(s) 204, 342, 684, 811, 1153
Hpy188III TCNNGA 6 cut(s) 272, 309, 425, 956, 1068, 1219
Hpy8I GTNNAC 4 cut(s) 126, 190, 361, 486
Hpy99I CGWCG 2 cut(s) 23, 155
HpyAV CCTTC 3 cut(s) 641, 778, 1095
HpyCH4III ACNGT 1 cut(s) 178
HpyCH4IV ACGT 4 cut(s) 18, 150, 516, 744
HpyCH4V TGCA 5 cut(s) 644, 1108, 1148, 1229, 1256
HpyF10VI GCNNNNNNNGC 3 cut(s) 388, 560, 1154
HpyF3I CTNAG 4 cut(s) 129, 450, 579, 957
HpySE526I ACGT 4 cut(s) 18, 150, 516, 744
Hsp92II CATG 3 cut(s) 79, 353, 632
HspAI GCGC 4 cut(s) 242, 382, 773, 775
Kzo9I GATC 5 cut(s) 268, 311, 342, 421, 430
LmnI GCTCC 4 cut(s) 216, 379, 663, 1250
Lsp1109I GCAGC 6 cut(s) 256, 403, 572, 678, 981, 1092
LweI GCATC 5 cut(s) 678, 1123, 1157, 1265, 1329
MaeI CTAG 1 cut(s) 804
MaeII ACGT 4 cut(s) 18, 150, 516, 744
MaeIII GTNAC 2 cut(s) 161, 700
MalI GATC 5 cut(s) 270, 313, 344, 423, 432
MboI GATC 5 cut(s) 268, 311, 342, 421, 430
MboII GAAGA 6 cut(s) 59, 62, 271, 440, 767, 1135
MfeI CAATTG 2 cut(s) 364, 1026
MhlI GDGCHC 3 cut(s) 221, 458, 898
MlsI TGGCCA 1 cut(s) 354
MluCI AATT 8 cut(s) 40, 328, 364, 495, 541, 999, 1026, 1268
MluNI TGGCCA 1 cut(s) 354
MlyI GAGTC 2 cut(s) 752, 1170
MmeI TCCRAC 1 cut(s) 592
Mox20I TGGCCA 1 cut(s) 354
MroXI GAANNNNTTC 2 cut(s) 198, 927
MscI TGGCCA 1 cut(s) 354
MseI TTAA 4 cut(s) 405, 861, 879, 951
MslI CAYNNNNRTG 1 cut(s) 536
Msp20I TGGCCA 1 cut(s) 354
MspA1I CMGCKG 1 cut(s) 563
MspI CCGG 9 cut(s) 12, 120, 144, 255, 470, 478, 489, 690, 1138
MspR9I CCNGG 8 cut(s) 121, 356, 470, 479, 522, 691, 1036, 1138
MunI CAATTG 2 cut(s) 364, 1026
MvaI CCWGG 3 cut(s) 356, 522, 1036
MvnI CGCG 1 cut(s) 775
MwoI GCNNNNNNNGC 3 cut(s) 388, 560, 1154
NciI CCSGG 5 cut(s) 121, 470, 479, 691, 1138
NdeII GATC 5 cut(s) 268, 311, 342, 421, 430
NlaIII CATG 3 cut(s) 79, 353, 632
NlaIV GGNNCC 4 cut(s) 81, 118, 897, 1246
NmuCI GTSAC 1 cut(s) 700
PaeR7I CTCGAG 1 cut(s) 1158
PauI GCGCGC 1 cut(s) 773
PcsI WCGNNNNNNNCGW 2 cut(s) 15, 147
PdmI GAANNNNTTC 2 cut(s) 198, 927
PfeI GAWTC 3 cut(s) 23, 194, 371
PflFI GACNNNGTC 1 cut(s) 815
PkrI GCNGC 6 cut(s) 246, 393, 562, 668, 971, 1107
PleI GAGTC 2 cut(s) 752, 1169
PpsI GAGTC 2 cut(s) 752, 1169
PsiI TTATAA 1 cut(s) 327
Psp1406I AACGTT 1 cut(s) 516
Psp6I CCWGG 3 cut(s) 354, 520, 1034
PspGI CCWGG 3 cut(s) 354, 520, 1034
PspN4I GGNNCC 4 cut(s) 81, 118, 897, 1246
PspPI GGNCC 2 cut(s) 79, 935
PspXI VCTCGAGB 1 cut(s) 1158
PsyI GACNNNGTC 1 cut(s) 815
PteI GCGCGC 1 cut(s) 773
PvuII CAGCTG 1 cut(s) 563
RsaI GTAC 4 cut(s) 485, 549, 1251, 1355
RsaNI GTAC 4 cut(s) 484, 548, 1250, 1354
RseI CAYNNNNRTG 1 cut(s) 536
SaqAI TTAA 4 cut(s) 405, 861, 879, 951
SatI GCNGC 6 cut(s) 245, 392, 561, 667, 970, 1106
Sau3AI GATC 5 cut(s) 268, 311, 342, 421, 430
Sau96I GGNCC 2 cut(s) 79, 935
SchI GAGTC 2 cut(s) 752, 1170
ScrFI CCNGG 8 cut(s) 121, 356, 470, 479, 522, 691, 1036, 1138
SduI GDGCHC 3 cut(s) 221, 458, 898
SfaNI GCATC 5 cut(s) 678, 1123, 1157, 1265, 1329
SfcI CTRYAG 2 cut(s) 177, 1324
Sfr274I CTCGAG 1 cut(s) 1158
SgrAI CRCCGGYG 1 cut(s) 488
SinI GGWCC 2 cut(s) 79, 935
SlaI CTCGAG 1 cut(s) 1158
SmiMI CAYNNNNRTG 1 cut(s) 536
SmlI CTYRAG 1 cut(s) 1158
SmoI CTYRAG 1 cut(s) 1158
SpeI ACTAGT 1 cut(s) 803
Sse9I AATT 8 cut(s) 40, 328, 364, 495, 541, 999, 1026, 1268
SsiI CCGC 5 cut(s) 91, 96, 458, 727, 1020
SspMI CTAG 1 cut(s) 804
StyD4I CCNGG 8 cut(s) 119, 354, 468, 477, 520, 689, 1034, 1136
StyI CCWWGG 1 cut(s) 225
TaaI ACNGT 1 cut(s) 178
TaiI ACGT 4 cut(s) 21, 153, 519, 747
TaqI TCGA 5 cut(s) 21, 153, 212, 310, 1159
TasI AATT 8 cut(s) 40, 328, 364, 495, 541, 999, 1026, 1268
TatI WGTACW 2 cut(s) 483, 1353
TfiI GAWTC 3 cut(s) 23, 194, 371
Tru1I TTAA 4 cut(s) 405, 861, 879, 951
Tru9I TTAA 4 cut(s) 405, 861, 879, 951
TscAI CASTG 3 cut(s) 181, 401, 1194
TseFI GTSAC 1 cut(s) 700
TseI GCWGC 6 cut(s) 244, 391, 560, 666, 969, 1105
Tsp45I GTSAC 1 cut(s) 700
TspDTI ATGAA 2 cut(s) 271, 936
TspGWI ACGGA 1 cut(s) 1237
TspRI CASTG 3 cut(s) 181, 401, 1194
Tth111I GACNNNGTC 1 cut(s) 815
VpaK11BI GGWCC 2 cut(s) 79, 935
XapI RAATTY 2 cut(s) 541, 1268
XhoI CTCGAG 1 cut(s) 1158
XmiI GTMKAC 1 cut(s) 125
XmnI GAANNNNTTC 2 cut(s) 198, 927
XspI CTAG 1 cut(s) 804
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.