FvH4_4g25180

Belongs to the actin family

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
Physical Location & Seq
Reverse (-)
27034643 .. 27039401
4759 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g25180.t1

Sequence Viewer

Length: 1287 bp
ATGGACCCTGCTTCTCGCCCCGCAGTAGTCATCGACAATGGCACCGGCTATACTAAGATGGGGTTTGCCGGCAACGTCGAGCCGTGTTACATTGTGCCCACAGTAGTTGCAGTCAACGATTCGTTTGTGAACCAATCGAGAAGCACCTCCTCCAAGGCCAGCTGGATAGCGCAGCACAATGCCGGCGTGATGGCCGATCTTGATTTCTTCATAGGGGATGAGGCTATCGAGAAATCGAGATCCAGCTCGACTTATAATTTGAAGTATCCGATTAGTCATGGGCAGGTGGAGAACTGGGACTCGATGGAGCGGTTCTGGCAGCAGTGTATATTTAATTACTTGCGTTGTGACCCTGAAGATCATTACTTTCTTTTGACTGAGAGCCCGCTTACTGCCCCGGAGAGCCGGGAGTATACGGGGGAGATTATGTTTGAGACTTTCAATGTTCCTGGCCTTTACATTGCTGTGAACTCGGTTCTTGCTCTTGCAGCTGGCTACACTACCTCTAAGTGTGAGATGACAGGTGTTGTAGTAGATGTTGGAGATGGGGCCAGTCATGTTGTTCCTGTTGCCGAAGGTTATGTTATTGGGAGCAGCATCAAGTCTGTTCCAATTGCAGGGAGAGATGTCACTCTTTTTGTCCAACAACTTATGCGGGAAAGAGGAGAGAATGTGCCACCAGAAGACTCCTTTGATGTAGCTAGAAAAGTGAAGGAAATGTATTGCTATACTAGTTCTGACATCGTCAAGGAGTTCAACAAGCATGATAAAGAACCATCCAAGTATATTAAGCAATGGAAAGGCATTAAACCAAAGACAGGAGCACCGTACACTTGTGATATTGGCTATGAACGATTTCTTGGACCAGAGGTATTTTTTAATCCTGAGATTTACAGCAGCGATTTCACCACTCCATTACCAGTTGTAATTGACAAATGTATTCAGTCTGCTCCAATTGACACCAGGAGGTCTTTGTATAAGAATATTGTGTTGTCTGGAGGTTCAACGATGTTCAAGGACTTCCATAGAAGGCTGCAAAGAGATATAAAGAAGATTGTGGATGCCCGGCTTCATGCATCTGAAGCTCGAGTCGGTGGAGAACTGAAATCACATCCAGTGGAAGTAAACGTGGTAAGCCATCCCATCCAGAGATATGCAGTTTGGTTTGGAGGCTCCGTACTTGCATCCACACCTGAATTCTTTGGGGCTTGCCATACAAAAGCAGAGTATGAGGAATACGGTGCAAGCATCTGTAGAACAAATCCTGTTTTCAAGGGTATGTACTGA

Protein Analysis

429

Amino Acids

47.77

Weight (kDa)

5.76

Isoelectric Point (pI)

39.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Actin PF00022 7 - 419 2.6e-80 Actin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 255
AarI CACCTGC 1 cut(s) 274
Acc36I ACCTGC 1 cut(s) 274
AccB1I GGYRCC 1 cut(s) 41
AccBSI CCGCTC 1 cut(s) 310
AccI GTMKAC 1 cut(s) 413
AciI CCGC 4 cut(s) 21, 310, 386, 655
AclWI GGATC 1 cut(s) 234
AcoI YGGCCR 1 cut(s) 192
AcsI RAATTY 1 cut(s) 1196
AcuI CTGAAG 2 cut(s) 375, 1101
AfaI GTAC 3 cut(s) 830, 1179, 1283
AfiI CCNNNNNNNGG 2 cut(s) 617, 818
AgsI TTSAA 6 cut(s) 262, 442, 757, 1005, 1015, 1273
AhlI ACTAGT 1 cut(s) 731
AjnI CCWGG 2 cut(s) 448, 962
AjuI GAANNNNNNNTTGG 2 cut(s) 843, 875
AluBI AGCT 5 cut(s) 162, 246, 491, 701, 1085
AluI AGCT 5 cut(s) 162, 246, 491, 701, 1085
Alw21I GWGCWC 1 cut(s) 826
Alw26I GTCTC 1 cut(s) 428
AlwI GGATC 1 cut(s) 234
Ama87I CYCGRG 1 cut(s) 1086
AoxI GGCC 4 cut(s) 156, 192, 451, 549
ApeKI GCWGC 6 cut(s) 172, 319, 488, 594, 897, 1033
ApoI RAATTY 1 cut(s) 1196
ArsI GACNNNNNNTTYG 2 cut(s) 241, 273
Asp700I GAANNNNTTC 1 cut(s) 855
AspLEI GCGC 1 cut(s) 172
AspS9I GGNCC 3 cut(s) 4, 549, 863
AsuC2I CCSGG 3 cut(s) 398, 407, 1066
AsuHPI GGTGA 1 cut(s) 898
AvaI CYCGRG 1 cut(s) 1086
AvaII GGWCC 2 cut(s) 4, 863
BaeGI GKGCMC 1 cut(s) 99
BanI GGYRCC 1 cut(s) 41
BanII GRGCYC 1 cut(s) 386
BbsI GAAGAC 1 cut(s) 690
Bbv12I GWGCWC 1 cut(s) 826
BbvI GCAGC 6 cut(s) 184, 331, 500, 606, 909, 1020
BccI CCATC 7 cut(s) 52, 184, 298, 539, 784, 1146, 1151
BceAI ACGGC 1 cut(s) 67
BciT130I CCWGG 2 cut(s) 450, 964
BciVI GTATCC 1 cut(s) 276
BcnI CCSGG 3 cut(s) 398, 407, 1066
BcoDI GTCTC 1 cut(s) 428
BcuI ACTAGT 1 cut(s) 731
BfaI CTAG 2 cut(s) 702, 732
BfmI CTRYAG 1 cut(s) 1252
BfuAI ACCTGC 1 cut(s) 274
BfuI GTATCC 1 cut(s) 276
BisI GCNGC 6 cut(s) 173, 320, 489, 595, 898, 1034
BlsI GCNGC 6 cut(s) 174, 321, 490, 596, 899, 1035
Bme1390I CCNGG 5 cut(s) 398, 407, 450, 964, 1066
Bme18I GGWCC 2 cut(s) 4, 863
BmeT110I CYCGRG 1 cut(s) 1086
BmgT120I GGNCC 3 cut(s) 4, 549, 863
BmiI GGNNCC 4 cut(s) 6, 43, 550, 1174
BmrFI CCNGG 5 cut(s) 398, 407, 450, 964, 1066
BmrI ACTGGG 1 cut(s) 304
BmsI GCATC 5 cut(s) 606, 1051, 1085, 1193, 1257
BmuI ACTGGG 1 cut(s) 304
BpiI GAAGAC 1 cut(s) 690
BpmI CTGGAG 1 cut(s) 1017
BpuMI CCSGG 3 cut(s) 398, 407, 1066
BsaJI CCNNGG 2 cut(s) 153, 396
BsaXI ACNNNNNCTCC 6 cut(s) 413, 443, 657, 687, 1161, 1191
Bsc4I CCNNNNNNNGG 2 cut(s) 617, 818
Bse118I RCCGGY 3 cut(s) 44, 68, 182
Bse1I ACTGG 4 cut(s) 299, 552, 920, 1115
Bse3DI GCAATG 2 cut(s) 459, 800
BseBI CCWGG 2 cut(s) 450, 964
BseDI CCNNGG 2 cut(s) 153, 396
BseGI GGATG 7 cut(s) 223, 776, 1066, 1111, 1138, 1143, 1184
BseLI CCNNNNNNNGG 2 cut(s) 617, 818
BseMI GCAATG 2 cut(s) 459, 800
BseMII CTCAG 2 cut(s) 369, 876
BseNI ACTGG 4 cut(s) 299, 552, 920, 1115
BseRI GAGGAG 2 cut(s) 139, 678
BseSI GKGCMC 1 cut(s) 99
BseXI GCAGC 6 cut(s) 184, 331, 500, 606, 909, 1020
BshFI GGCC 4 cut(s) 158, 194, 453, 551
BshNI GGYRCC 1 cut(s) 41
BsiHKAI GWGCWC 1 cut(s) 826
BsiHKCI CYCGRG 1 cut(s) 1086
BsiSI CCGG 6 cut(s) 45, 69, 183, 398, 406, 1066
BslFI GGGAC 1 cut(s) 311
BslI CCNNNNNNNGG 2 cut(s) 617, 818
BsmAI GTCTC 1 cut(s) 428
BsmFI GGGAC 1 cut(s) 311
BsnI GGCC 4 cut(s) 158, 194, 453, 551
BsoBI CYCGRG 1 cut(s) 1086
Bsp1286I GDGCHC 3 cut(s) 99, 386, 826
Bsp143I GATC 3 cut(s) 196, 239, 358
BspACI CCGC 4 cut(s) 21, 310, 386, 655
BspANI GGCC 4 cut(s) 158, 194, 453, 551
BspCNI CTCAG 2 cut(s) 370, 877
BspLI GGNNCC 4 cut(s) 6, 43, 550, 1174
BspMI ACCTGC 1 cut(s) 274
BspPI GGATC 1 cut(s) 234
BspT107I GGYRCC 1 cut(s) 41
BsrBI CCGCTC 1 cut(s) 310
BsrDI GCAATG 2 cut(s) 459, 800
BsrFI RCCGGY 3 cut(s) 44, 68, 182
BsrI ACTGG 4 cut(s) 299, 552, 920, 1115
BssAI RCCGGY 3 cut(s) 44, 68, 182
BssECI CCNNGG 2 cut(s) 153, 396
BssMI GATC 3 cut(s) 196, 239, 358
BssNAI GTATAC 1 cut(s) 414
BssT1I CCWWGG 1 cut(s) 153
Bst1107I GTATAC 1 cut(s) 414
Bst2UI CCWGG 2 cut(s) 450, 964
Bst4CI ACNGT 3 cut(s) 103, 828, 1241
BstC8I GCNNGC 7 cut(s) 70, 160, 184, 386, 493, 1210, 1246
BstDEI CTNAG 4 cut(s) 54, 378, 507, 885
BstF5I GGATG 7 cut(s) 223, 776, 1066, 1111, 1138, 1143, 1184
BstHHI GCGC 1 cut(s) 172
BstKTI GATC 3 cut(s) 199, 242, 361
BstMAI GTCTC 1 cut(s) 428
BstMBI GATC 3 cut(s) 196, 239, 358
BstMWI GCNNNNNNNGC 3 cut(s) 316, 488, 1082
BstNI CCWGG 2 cut(s) 450, 964
BstSCI CCNGG 5 cut(s) 396, 405, 448, 962, 1064
BstSFI CTRYAG 1 cut(s) 1252
BstSLI GKGCMC 1 cut(s) 99
BstV1I GCAGC 6 cut(s) 184, 331, 500, 606, 909, 1020
BstV2I GAAGAC 1 cut(s) 690
BstX2I RGATCY 1 cut(s) 239
BstYI RGATCY 1 cut(s) 239
BstZ17I GTATAC 1 cut(s) 414
BsuI GTATCC 1 cut(s) 276
BsuRI GGCC 4 cut(s) 158, 194, 453, 551
BtsCI GGATG 7 cut(s) 223, 776, 1066, 1111, 1138, 1143, 1184
BtsI GCAGTG 1 cut(s) 329
BtsIMutI CAGTG 2 cut(s) 329, 1122
BveI ACCTGC 1 cut(s) 274
Cac8I GCNNGC 7 cut(s) 70, 160, 184, 386, 493, 1210, 1246
CfoI GCGC 1 cut(s) 172
Cfr10I RCCGGY 3 cut(s) 44, 68, 182
Cfr13I GGNCC 3 cut(s) 4, 549, 863
Csp6I GTAC 3 cut(s) 829, 1178, 1282
CspCI CAANNNNNGTGG 2 cut(s) 88, 123
CviAII CATG 4 cut(s) 278, 557, 764, 1073
CviQI GTAC 3 cut(s) 829, 1178, 1282
DdeI CTNAG 4 cut(s) 54, 378, 507, 885
DpnI GATC 3 cut(s) 198, 241, 360
DpnII GATC 3 cut(s) 196, 239, 358
EaeI YGGCCR 1 cut(s) 192
Eco130I CCWWGG 1 cut(s) 153
Eco24I GRGCYC 1 cut(s) 386
Eco47I GGWCC 2 cut(s) 4, 863
Eco57I CTGAAG 2 cut(s) 375, 1101
Eco88I CYCGRG 1 cut(s) 1086
EcoRI GAATTC 1 cut(s) 1196
EcoRII CCWGG 2 cut(s) 448, 962
EcoT14I CCWWGG 1 cut(s) 153
EcoT22I ATGCAT 1 cut(s) 1078
EcoT38I GRGCYC 1 cut(s) 386
ErhI CCWWGG 1 cut(s) 153
FaeI CATG 4 cut(s) 281, 560, 767, 1076
FaqI GGGAC 1 cut(s) 311
FatI CATG 4 cut(s) 277, 556, 763, 1072
FauI CCCGC 3 cut(s) 28, 393, 648
FblI GTMKAC 1 cut(s) 413
Fnu4HI GCNGC 6 cut(s) 173, 320, 489, 595, 898, 1034
FokI GGATG 7 cut(s) 230, 763, 1073, 1098, 1125, 1130, 1171
FriOI GRGCYC 1 cut(s) 386
Fsp4HI GCNGC 6 cut(s) 173, 320, 489, 595, 898, 1034
FspBI CTAG 2 cut(s) 702, 732
GlaI GCGC 1 cut(s) 171
GluI GCNGC 6 cut(s) 173, 320, 489, 595, 898, 1034
GsuI CTGGAG 1 cut(s) 1017
HaeIII GGCC 4 cut(s) 158, 194, 453, 551
HapII CCGG 6 cut(s) 45, 69, 183, 398, 406, 1066
HhaI GCGC 1 cut(s) 172
Hin1II CATG 4 cut(s) 281, 560, 767, 1076
Hin6I GCGC 1 cut(s) 170
HinP1I GCGC 1 cut(s) 170
HincII GTYRAC 1 cut(s) 115
HindII GTYRAC 1 cut(s) 115
HinfI GANTC 4 cut(s) 119, 299, 686, 1089
HpaII CCGG 6 cut(s) 45, 69, 183, 398, 406, 1066
HphI GGTGA 1 cut(s) 898
Hpy166II GTNNAC 6 cut(s) 115, 130, 414, 469, 831, 1126
Hpy188I TCNGA 3 cut(s) 270, 739, 1081
Hpy188III TCNNGA 7 cut(s) 138, 200, 229, 237, 884, 996, 1147
Hpy8I GTNNAC 6 cut(s) 115, 130, 414, 469, 831, 1126
Hpy99I CGWCG 1 cut(s) 80
HpyAV CCTTC 3 cut(s) 569, 706, 1023
HpyCH4III ACNGT 3 cut(s) 103, 828, 1241
HpyCH4IV ACGT 2 cut(s) 75, 1128
HpyCH4V TGCA 8 cut(s) 110, 488, 617, 1036, 1076, 1157, 1184, 1244
HpyF10VI GCNNNNNNNGC 3 cut(s) 316, 488, 1082
HpyF3I CTNAG 4 cut(s) 54, 378, 507, 885
HpySE526I ACGT 2 cut(s) 75, 1128
Hsp92II CATG 4 cut(s) 281, 560, 767, 1076
HspAI GCGC 1 cut(s) 170
KroI GCCGGC 2 cut(s) 68, 182
KroNI GCCGGC 2 cut(s) 70, 184
Kzo9I GATC 3 cut(s) 196, 239, 358
LmnI GCTCC 5 cut(s) 307, 591, 821, 955, 1178
Lsp1109I GCAGC 6 cut(s) 184, 331, 500, 606, 909, 1020
LweI GCATC 5 cut(s) 606, 1051, 1085, 1193, 1257
MaeI CTAG 2 cut(s) 702, 732
MaeII ACGT 2 cut(s) 75, 1128
MaeIII GTNAC 3 cut(s) 86, 347, 628
MalI GATC 3 cut(s) 198, 241, 360
MbiI CCGCTC 1 cut(s) 310
MboI GATC 3 cut(s) 196, 239, 358
MboII GAAGA 4 cut(s) 199, 368, 695, 1063
MfeI CAATTG 2 cut(s) 612, 954
MflI RGATCY 1 cut(s) 239
MhlI GDGCHC 3 cut(s) 99, 386, 826
MluCI AATT 6 cut(s) 256, 334, 612, 927, 954, 1196
MlyI GAGTC 3 cut(s) 293, 680, 1098
MmeI TCCRAC 2 cut(s) 520, 667
Mph1103I ATGCAT 1 cut(s) 1078
MroNI GCCGGC 2 cut(s) 68, 182
MroXI GAANNNNTTC 1 cut(s) 855
MseI TTAA 4 cut(s) 333, 789, 807, 879
MslI CAYNNNNRTG 1 cut(s) 464
MspA1I CMGCKG 2 cut(s) 162, 491
MspI CCGG 6 cut(s) 45, 69, 183, 398, 406, 1066
MspR9I CCNGG 5 cut(s) 398, 407, 450, 964, 1066
MunI CAATTG 2 cut(s) 612, 954
MvaI CCWGG 2 cut(s) 450, 964
MwoI GCNNNNNNNGC 3 cut(s) 316, 488, 1082
NaeI GCCGGC 2 cut(s) 70, 184
NciI CCSGG 3 cut(s) 398, 407, 1066
NdeII GATC 3 cut(s) 196, 239, 358
NgoMIV GCCGGC 2 cut(s) 68, 182
NlaIII CATG 4 cut(s) 281, 560, 767, 1076
NlaIV GGNNCC 4 cut(s) 6, 43, 550, 1174
NmuCI GTSAC 2 cut(s) 347, 628
NsiI ATGCAT 1 cut(s) 1078
PaeR7I CTCGAG 1 cut(s) 1086
PaqCI CACCTGC 1 cut(s) 274
PdiI GCCGGC 2 cut(s) 70, 184
PdmI GAANNNNTTC 1 cut(s) 855
PfeI GAWTC 1 cut(s) 119
PflFI GACNNNGTC 1 cut(s) 743
PkrI GCNGC 6 cut(s) 174, 321, 490, 596, 899, 1035
PleI GAGTC 3 cut(s) 293, 680, 1097
PpsI GAGTC 3 cut(s) 293, 680, 1097
PsiI TTATAA 1 cut(s) 255
Psp6I CCWGG 2 cut(s) 448, 962
PspGI CCWGG 2 cut(s) 448, 962
PspN4I GGNNCC 4 cut(s) 6, 43, 550, 1174
PspPI GGNCC 3 cut(s) 4, 549, 863
PspXI VCTCGAGB 1 cut(s) 1086
PsuI RGATCY 1 cut(s) 239
PsyI GACNNNGTC 1 cut(s) 743
PvuII CAGCTG 2 cut(s) 162, 491
RsaI GTAC 3 cut(s) 830, 1179, 1283
RsaNI GTAC 3 cut(s) 829, 1178, 1282
RseI CAYNNNNRTG 1 cut(s) 464
SaqAI TTAA 4 cut(s) 333, 789, 807, 879
SatI GCNGC 6 cut(s) 173, 320, 489, 595, 898, 1034
Sau3AI GATC 3 cut(s) 196, 239, 358
Sau96I GGNCC 3 cut(s) 4, 549, 863
SchI GAGTC 3 cut(s) 293, 680, 1098
ScrFI CCNGG 5 cut(s) 398, 407, 450, 964, 1066
SduI GDGCHC 3 cut(s) 99, 386, 826
SfaNI GCATC 5 cut(s) 606, 1051, 1085, 1193, 1257
SfcI CTRYAG 1 cut(s) 1252
Sfr274I CTCGAG 1 cut(s) 1086
SinI GGWCC 2 cut(s) 4, 863
SlaI CTCGAG 1 cut(s) 1086
SmiMI CAYNNNNRTG 1 cut(s) 464
SmlI CTYRAG 1 cut(s) 1086
SmoI CTYRAG 1 cut(s) 1086
SpeI ACTAGT 1 cut(s) 731
Sse9I AATT 6 cut(s) 256, 334, 612, 927, 954, 1196
SsiI CCGC 4 cut(s) 21, 310, 386, 655
SspI AATATT 1 cut(s) 985
SspMI CTAG 2 cut(s) 702, 732
StyD4I CCNGG 5 cut(s) 396, 405, 448, 962, 1064
StyI CCWWGG 1 cut(s) 153
TaaI ACNGT 3 cut(s) 103, 828, 1241
TaiI ACGT 2 cut(s) 78, 1131
TaqI TCGA 8 cut(s) 33, 78, 137, 228, 236, 248, 302, 1087
TasI AATT 6 cut(s) 256, 334, 612, 927, 954, 1196
TatI WGTACW 1 cut(s) 1281
TfiI GAWTC 1 cut(s) 119
Tru1I TTAA 4 cut(s) 333, 789, 807, 879
Tru9I TTAA 4 cut(s) 333, 789, 807, 879
TscAI CASTG 2 cut(s) 329, 1122
TseFI GTSAC 2 cut(s) 347, 628
TseI GCWGC 6 cut(s) 172, 319, 488, 594, 897, 1033
Tsp45I GTSAC 2 cut(s) 347, 628
TspDTI ATGAA 3 cut(s) 199, 864, 1061
TspGWI ACGGA 1 cut(s) 1165
TspRI CASTG 2 cut(s) 329, 1122
Tth111I GACNNNGTC 1 cut(s) 743
VpaK11BI GGWCC 2 cut(s) 4, 863
XapI RAATTY 1 cut(s) 1196
XhoI CTCGAG 1 cut(s) 1086
XmiI GTMKAC 1 cut(s) 413
XmnI GAANNNNTTC 1 cut(s) 855
XspI CTAG 2 cut(s) 702, 732
Zsp2I ATGCAT 1 cut(s) 1078
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.