pycom13g09190

Belongs to the actin family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
Physical Location & Seq
Forward (+)
6153197 .. 6156310
3114 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g09190.9

Sequence Viewer

Length: 1284 bp
ATGGACCCGGCCTCTCGCCCAGCTGTAGTCATCGACAATGGAAGTGGGTATACTAAGATGGGTTTCGCTGGAAATGTCGAGCCGTGTTACATTGTTCCGACTGTAGTTGCCTTAAATGAATCGTTTTTGAACCCGTCCAGAACGTCCTCCAAGGCCGGCTGGGTAGCGCAGCACAATGCTGGCGTGATGGCTGATCTTGATTTTTTTATAGGGGATGAGGCACTGGATAGATCTCGATCTAGTACGACTTACAATCTGAGCTATCCCATTCGACAGGGCCAGGTCGAGAATTGGGATTCAATGGAGCGGTTCTGGCAGCAATGTATATTTAACTACTTGCGTTGTGATCCTGAAGACCATTGTTTTCTTTTAACTGAGAGTCCGCTTACTGCCCCGGAGAGCCGGGAGTACACGGGCGAAATCATGTTCGAAACTTTCAATGTTCCTGGCCTTTACATTGCCGTGAATTCAGTACTTGCTCTTGCAGCTGGTTACACTACCTCTAAGTGTGAGATGACAGGGGTTGTAGTGGATGTTGGAGATGGGGCAACTCACATTGTACCTGTTGCAGAAGGTTATGTTATTGGGAGCAGCATCAAGTCGGTTCCTATTGCCGGGAAAGATGTCACTCTATTCGTCCAGCAGCTTATGCGGGAAAGAGGCGAGAATGTGCCACAAGAAGACTCCTTTGACGTAGCTCGCAGAGTGAAGGAAATGTATTGCTATACTAGTTCTGACATAGTCAAGGAGTTTAATAAGCACGACAAAGAACCTTCCAAGTATATTAAGCAATGGAGAGGCATTAAGCCAAAGACAGGGGCGCCCTACTCTTGTGACATTGGCTATGAACGATTTCTGGGTCCAGAGGTTTTCTTCAATCCTGAGATTTATAGCACAGACTTCACCACTCCCTTACCAGTTGTAATTGACAAGTGTATTCAGTCTGCTCCAATTGACACCAGGAGGTCTTTGTATAAGAATATAGTGTTGTCCGGAGGTTCAACCATGTTCAAGGACTTCCACAGGAGGTTGCAACGGGATATAAAGAAGATTGTTGATGCCCGGCTTCTTGCATCTGAAGCTCGAGTTGGCGGTGAAGTAAAATCACAGCCAGTGGAAGTGAATGTAGTTAGTCATCCCATCCAGAGATTTGCAGTTTGGTTTGGAGGCTCTGTACTTGCATCCACACCTGAATTCTTTGCGGCTTGCCATACAAAAGAAGAGTATGAGGAATACGGCGCAAGCATATGCAGAACAAATCCTGTTTTCAAGGGGATGTATTGA

Protein Analysis

428

Amino Acids

47.72

Weight (kDa)

5.45

Isoelectric Point (pI)

42.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 820
AccBSI CCGCTC 1 cut(s) 307
AccI GTMKAC 1 cut(s) 50
AccIII TCCGGA 1 cut(s) 992
AciI CCGC 5 cut(s) 307, 383, 652, 1092, 1202
AclWI GGATC 1 cut(s) 341
AcsI RAATTY 2 cut(s) 466, 1193
AcuI CTGAAG 2 cut(s) 372, 1098
AcyI GRCGYC 1 cut(s) 821
AfaI GTAC 5 cut(s) 244, 410, 474, 561, 1176
AfiI CCNNNNNNNGG 2 cut(s) 614, 815
AgsI TTSAA 7 cut(s) 130, 300, 439, 877, 1002, 1012, 1270
AhlI ACTAGT 1 cut(s) 728
AjnI CCWGG 3 cut(s) 279, 445, 959
AjuI GAANNNNNNNTTGG 2 cut(s) 1071, 1103
AluBI AGCT 6 cut(s) 23, 261, 488, 646, 698, 1082
AluI AGCT 6 cut(s) 23, 261, 488, 646, 698, 1082
AlwI GGATC 1 cut(s) 341
Ama87I CYCGRG 1 cut(s) 1083
Aor13HI TCCGGA 1 cut(s) 992
AoxI GGCC 4 cut(s) 9, 153, 277, 448
ApeKI GCWGC 5 cut(s) 169, 316, 485, 591, 643
ApoI RAATTY 2 cut(s) 466, 1193
Asp700I GAANNNNTTC 1 cut(s) 852
AspLEI GCGC 3 cut(s) 169, 823, 1241
AspS9I GGNCC 3 cut(s) 4, 277, 860
AsuC2I CCSGG 5 cut(s) 8, 395, 404, 616, 1063
AsuHPI GGTGA 2 cut(s) 895, 1106
AsuII TTCGAA 1 cut(s) 429
AvaI CYCGRG 1 cut(s) 1083
AvaII GGWCC 2 cut(s) 4, 860
BanI GGYRCC 1 cut(s) 820
BarI GAAGNNNNNNTAC 2 cut(s) 34, 66
BbsI GAAGAC 2 cut(s) 360, 687
BbvI GCAGC 5 cut(s) 181, 328, 497, 603, 655
BccI CCATC 4 cut(s) 52, 181, 536, 1148
BceAI ACGGC 3 cut(s) 67, 446, 1252
BciT130I CCWGG 3 cut(s) 281, 447, 961
BcnI CCSGG 5 cut(s) 8, 395, 404, 616, 1063
BcuI ACTAGT 1 cut(s) 728
BfaI CTAG 2 cut(s) 240, 729
BfmI CTRYAG 2 cut(s) 24, 102
BfoI RGCGCY 1 cut(s) 824
BglII AGATCT 1 cut(s) 230
BisI GCNGC 6 cut(s) 170, 317, 486, 592, 644, 1203
BlsI GCNGC 6 cut(s) 171, 318, 487, 593, 645, 1204
BmcAI AGTACT 1 cut(s) 474
Bme1390I CCNGG 8 cut(s) 8, 281, 395, 404, 447, 616, 961, 1063
Bme18I GGWCC 2 cut(s) 4, 860
BmeT110I CYCGRG 1 cut(s) 1083
BmgT120I GGNCC 3 cut(s) 4, 277, 860
BmiI GGNNCC 4 cut(s) 6, 606, 822, 861
BmrFI CCNGG 8 cut(s) 8, 281, 395, 404, 447, 616, 961, 1063
BmsI GCATC 4 cut(s) 603, 1048, 1082, 1190
BpiI GAAGAC 2 cut(s) 360, 687
Bpu14I TTCGAA 1 cut(s) 429
BpuMI CCSGG 5 cut(s) 8, 395, 404, 616, 1063
BsaBI GATNNNNATC 1 cut(s) 235
BsaHI GRCGYC 1 cut(s) 821
BsaJI CCNNGG 2 cut(s) 150, 393
BsaWI WCCGGW 1 cut(s) 992
BsaXI ACNNNNNCTCC 2 cut(s) 1158, 1188
Bsc4I CCNNNNNNNGG 2 cut(s) 614, 815
Bse118I RCCGGY 1 cut(s) 155
Bse1I ACTGG 3 cut(s) 228, 917, 1112
Bse3DI GCAATG 3 cut(s) 326, 456, 797
Bse8I GATNNNNATC 1 cut(s) 235
BseAI TCCGGA 1 cut(s) 992
BseBI CCWGG 3 cut(s) 281, 447, 961
BseDI CCNNGG 2 cut(s) 150, 393
BseGI GGATG 6 cut(s) 220, 538, 1135, 1140, 1181, 1281
BseJI GATNNNNATC 1 cut(s) 235
BseLI CCNNNNNNNGG 2 cut(s) 614, 815
BseMI GCAATG 3 cut(s) 326, 456, 797
BseMII CTCAG 3 cut(s) 248, 366, 873
BseNI ACTGG 3 cut(s) 228, 917, 1112
BseXI GCAGC 5 cut(s) 181, 328, 497, 603, 655
BseYI CCCAGC 2 cut(s) 19, 159
BshFI GGCC 4 cut(s) 11, 155, 279, 450
BshNI GGYRCC 1 cut(s) 820
BsiHKCI CYCGRG 1 cut(s) 1083
BsiSI CCGG 7 cut(s) 8, 156, 395, 403, 615, 993, 1063
BslI CCNNNNNNNGG 2 cut(s) 614, 815
BsnI GGCC 4 cut(s) 11, 155, 279, 450
BsoBI CYCGRG 1 cut(s) 1083
Bsp119I TTCGAA 1 cut(s) 429
Bsp13I TCCGGA 1 cut(s) 992
Bsp143I GATC 4 cut(s) 193, 230, 236, 346
BspACI CCGC 5 cut(s) 307, 383, 652, 1092, 1202
BspANI GGCC 4 cut(s) 11, 155, 279, 450
BspCNI CTCAG 3 cut(s) 249, 367, 874
BspEI TCCGGA 1 cut(s) 992
BspLI GGNNCC 4 cut(s) 6, 606, 822, 861
BspPI GGATC 1 cut(s) 341
BspT104I TTCGAA 1 cut(s) 429
BspT107I GGYRCC 1 cut(s) 820
BsrBI CCGCTC 1 cut(s) 307
BsrDI GCAATG 3 cut(s) 326, 456, 797
BsrFI RCCGGY 1 cut(s) 155
BsrI ACTGG 3 cut(s) 228, 917, 1112
BssAI RCCGGY 1 cut(s) 155
BssECI CCNNGG 2 cut(s) 150, 393
BssMI GATC 4 cut(s) 193, 230, 236, 346
BssNAI GTATAC 1 cut(s) 51
BssNI GRCGYC 1 cut(s) 821
BssT1I CCWWGG 1 cut(s) 150
Bst1107I GTATAC 1 cut(s) 51
Bst2UI CCWGG 3 cut(s) 281, 447, 961
Bst4CI ACNGT 1 cut(s) 103
Bst6I CTCTTC 1 cut(s) 1215
BstACI GRCGYC 1 cut(s) 821
BstAPI GCANNNNNTGC 1 cut(s) 649
BstBI TTCGAA 1 cut(s) 429
BstC8I GCNNGC 5 cut(s) 157, 181, 700, 1207, 1243
BstDEI CTNAG 5 cut(s) 54, 257, 375, 504, 882
BstF5I GGATG 6 cut(s) 220, 538, 1135, 1140, 1181, 1281
BstH2I RGCGCY 1 cut(s) 824
BstHHI GCGC 3 cut(s) 169, 823, 1241
BstKTI GATC 4 cut(s) 196, 233, 239, 349
BstMBI GATC 4 cut(s) 193, 230, 236, 346
BstMWI GCNNNNNNNGC 4 cut(s) 313, 485, 649, 1079
BstNI CCWGG 3 cut(s) 281, 447, 961
BstSCI CCNGG 8 cut(s) 6, 279, 393, 402, 445, 614, 959, 1061
BstSFI CTRYAG 2 cut(s) 24, 102
BstV1I GCAGC 5 cut(s) 181, 328, 497, 603, 655
BstV2I GAAGAC 2 cut(s) 360, 687
BstX2I RGATCY 1 cut(s) 230
BstYI RGATCY 1 cut(s) 230
BstZ17I GTATAC 1 cut(s) 51
BsuRI GGCC 4 cut(s) 11, 155, 279, 450
BtsCI GGATG 6 cut(s) 220, 538, 1135, 1140, 1181, 1281
BtsIMutI CAGTG 2 cut(s) 221, 1119
Cac8I GCNNGC 5 cut(s) 157, 181, 700, 1207, 1243
CfoI GCGC 3 cut(s) 169, 823, 1241
Cfr10I RCCGGY 1 cut(s) 155
Cfr13I GGNCC 3 cut(s) 4, 277, 860
Csp6I GTAC 5 cut(s) 243, 409, 473, 560, 1175
CspCI CAANNNNNGTGG 2 cut(s) 25, 60
CviAII CATG 2 cut(s) 424, 1006
CviQI GTAC 5 cut(s) 243, 409, 473, 560, 1175
DdeI CTNAG 5 cut(s) 54, 257, 375, 504, 882
DinI GGCGCC 1 cut(s) 822
DpnI GATC 4 cut(s) 195, 232, 238, 348
DpnII GATC 4 cut(s) 193, 230, 236, 346
Eam1104I CTCTTC 1 cut(s) 1215
EarI CTCTTC 1 cut(s) 1215
Eco130I CCWWGG 1 cut(s) 150
Eco47I GGWCC 2 cut(s) 4, 860
Eco57I CTGAAG 2 cut(s) 372, 1098
Eco88I CYCGRG 1 cut(s) 1083
EcoRI GAATTC 2 cut(s) 466, 1193
EcoRII CCWGG 3 cut(s) 279, 445, 959
EcoT14I CCWWGG 1 cut(s) 150
EgeI GGCGCC 1 cut(s) 822
EheI GGCGCC 1 cut(s) 822
ErhI CCWWGG 1 cut(s) 150
FaeI CATG 2 cut(s) 427, 1009
FatI CATG 2 cut(s) 423, 1005
FauI CCCGC 1 cut(s) 645
FauNDI CATATG 1 cut(s) 1247
FblI GTMKAC 1 cut(s) 50
Fnu4HI GCNGC 6 cut(s) 170, 317, 486, 592, 644, 1203
FokI GGATG 5 cut(s) 227, 545, 1122, 1127, 1168
Fsp4HI GCNGC 6 cut(s) 170, 317, 486, 592, 644, 1203
FspBI CTAG 2 cut(s) 240, 729
GlaI GCGC 3 cut(s) 168, 822, 1240
GluI GCNGC 6 cut(s) 170, 317, 486, 592, 644, 1203
GsaI CCCAGC 2 cut(s) 23, 163
HaeII RGCGCY 1 cut(s) 824
HaeIII GGCC 4 cut(s) 11, 155, 279, 450
HapII CCGG 7 cut(s) 8, 156, 395, 403, 615, 993, 1063
HhaI GCGC 3 cut(s) 169, 823, 1241
Hin1I GRCGYC 1 cut(s) 821
Hin1II CATG 2 cut(s) 427, 1009
Hin6I GCGC 3 cut(s) 167, 821, 1239
HinP1I GCGC 3 cut(s) 167, 821, 1239
HinfI GANTC 4 cut(s) 119, 296, 379, 683
HpaII CCGG 7 cut(s) 8, 156, 395, 403, 615, 993, 1063
HphI GGTGA 2 cut(s) 895, 1106
Hpy166II GTNNAC 2 cut(s) 51, 411
Hpy188I TCNGA 4 cut(s) 99, 258, 736, 1078
Hpy188III TCNNGA 9 cut(s) 138, 197, 234, 286, 350, 863, 881, 993, 1144
Hpy8I GTNNAC 2 cut(s) 51, 411
HpyAV CCTTC 3 cut(s) 566, 703, 783
HpyCH4III ACNGT 1 cut(s) 103
HpyCH4IV ACGT 2 cut(s) 143, 693
HpyCH4V TGCA 7 cut(s) 485, 569, 1033, 1073, 1154, 1181, 1251
HpyF10VI GCNNNNNNNGC 4 cut(s) 313, 485, 649, 1079
HpyF3I CTNAG 5 cut(s) 54, 257, 375, 504, 882
HpySE526I ACGT 2 cut(s) 143, 693
Hsp92I GRCGYC 1 cut(s) 821
Hsp92II CATG 2 cut(s) 427, 1009
HspAI GCGC 3 cut(s) 167, 821, 1239
KasI GGCGCC 1 cut(s) 820
Kpn2I TCCGGA 1 cut(s) 992
KroI GCCGGC 1 cut(s) 155
KroNI GCCGGC 1 cut(s) 157
Kzo9I GATC 4 cut(s) 193, 230, 236, 346
LmnI GCTCC 3 cut(s) 304, 588, 952
Lsp1109I GCAGC 5 cut(s) 181, 328, 497, 603, 655
LweI GCATC 4 cut(s) 603, 1048, 1082, 1190
MaeI CTAG 2 cut(s) 240, 729
MaeII ACGT 2 cut(s) 143, 693
MaeIII GTNAC 4 cut(s) 86, 491, 625, 833
MalI GATC 4 cut(s) 195, 232, 238, 348
MbiI CCGCTC 1 cut(s) 307
MboI GATC 4 cut(s) 193, 230, 236, 346
MboII GAAGA 5 cut(s) 365, 692, 865, 1060, 1232
MfeI CAATTG 1 cut(s) 951
MflI RGATCY 1 cut(s) 230
MluCI AATT 5 cut(s) 289, 466, 924, 951, 1193
Mly113I GGCGCC 1 cut(s) 821
MlyI GAGTC 2 cut(s) 388, 677
MmeI TCCRAC 2 cut(s) 122, 517
MroI TCCGGA 1 cut(s) 992
MroNI GCCGGC 1 cut(s) 155
MroXI GAANNNNTTC 1 cut(s) 852
MseI TTAA 6 cut(s) 113, 330, 371, 753, 786, 804
MslI CAYNNNNRTG 1 cut(s) 461
MspA1I CMGCKG 2 cut(s) 23, 488
MspI CCGG 7 cut(s) 8, 156, 395, 403, 615, 993, 1063
MspR9I CCNGG 8 cut(s) 8, 281, 395, 404, 447, 616, 961, 1063
MunI CAATTG 1 cut(s) 951
MvaI CCWGG 3 cut(s) 281, 447, 961
MwoI GCNNNNNNNGC 4 cut(s) 313, 485, 649, 1079
NaeI GCCGGC 1 cut(s) 157
NarI GGCGCC 1 cut(s) 821
NciI CCSGG 5 cut(s) 8, 395, 404, 616, 1063
NdeI CATATG 1 cut(s) 1247
NdeII GATC 4 cut(s) 193, 230, 236, 346
NgoMIV GCCGGC 1 cut(s) 155
NlaIII CATG 2 cut(s) 427, 1009
NlaIV GGNNCC 4 cut(s) 6, 606, 822, 861
NmuCI GTSAC 2 cut(s) 625, 833
NspV TTCGAA 1 cut(s) 429
PaeR7I CTCGAG 1 cut(s) 1083
PdiI GCCGGC 1 cut(s) 157
PdmI GAANNNNTTC 1 cut(s) 852
PfeI GAWTC 2 cut(s) 119, 296
PflFI GACNNNGTC 1 cut(s) 740
PkrI GCNGC 6 cut(s) 171, 318, 487, 593, 645, 1204
PleI GAGTC 2 cut(s) 387, 677
PluTI GGCGCC 1 cut(s) 824
PpsI GAGTC 2 cut(s) 387, 677
Psp6I CCWGG 3 cut(s) 279, 445, 959
PspFI CCCAGC 2 cut(s) 19, 159
PspGI CCWGG 3 cut(s) 279, 445, 959
PspN4I GGNNCC 4 cut(s) 6, 606, 822, 861
PspPI GGNCC 3 cut(s) 4, 277, 860
PspXI VCTCGAGB 1 cut(s) 1083
PsuI RGATCY 1 cut(s) 230
PsyI GACNNNGTC 1 cut(s) 740
PvuII CAGCTG 2 cut(s) 23, 488
RsaI GTAC 5 cut(s) 244, 410, 474, 561, 1176
RsaNI GTAC 5 cut(s) 243, 409, 473, 560, 1175
RseI CAYNNNNRTG 1 cut(s) 461
SaqAI TTAA 6 cut(s) 113, 330, 371, 753, 786, 804
SatI GCNGC 6 cut(s) 170, 317, 486, 592, 644, 1203
Sau3AI GATC 4 cut(s) 193, 230, 236, 346
Sau96I GGNCC 3 cut(s) 4, 277, 860
ScaI AGTACT 1 cut(s) 474
SchI GAGTC 2 cut(s) 388, 677
ScrFI CCNGG 8 cut(s) 8, 281, 395, 404, 447, 616, 961, 1063
SfaNI GCATC 4 cut(s) 603, 1048, 1082, 1190
SfcI CTRYAG 2 cut(s) 24, 102
SfoI GGCGCC 1 cut(s) 822
Sfr274I CTCGAG 1 cut(s) 1083
SfuI TTCGAA 1 cut(s) 429
SinI GGWCC 2 cut(s) 4, 860
SlaI CTCGAG 1 cut(s) 1083
SmiMI CAYNNNNRTG 1 cut(s) 461
SmlI CTYRAG 1 cut(s) 1083
SmoI CTYRAG 1 cut(s) 1083
SpeI ACTAGT 1 cut(s) 728
Sse9I AATT 5 cut(s) 289, 466, 924, 951, 1193
SsiI CCGC 5 cut(s) 307, 383, 652, 1092, 1202
SspDI GGCGCC 1 cut(s) 820
SspMI CTAG 2 cut(s) 240, 729
StyD4I CCNGG 8 cut(s) 6, 279, 393, 402, 445, 614, 959, 1061
StyI CCWWGG 1 cut(s) 150
TaaI ACNGT 1 cut(s) 103
TaiI ACGT 2 cut(s) 146, 696
TaqI TCGA 7 cut(s) 33, 78, 235, 271, 285, 429, 1084
TasI AATT 5 cut(s) 289, 466, 924, 951, 1193
TatI WGTACW 3 cut(s) 408, 472, 1174
TauI GCSGC 1 cut(s) 1205
TfiI GAWTC 2 cut(s) 119, 296
Tru1I TTAA 6 cut(s) 113, 330, 371, 753, 786, 804
Tru9I TTAA 6 cut(s) 113, 330, 371, 753, 786, 804
TscAI CASTG 2 cut(s) 228, 1119
TseFI GTSAC 2 cut(s) 625, 833
TseI GCWGC 5 cut(s) 169, 316, 485, 591, 643
Tsp45I GTSAC 2 cut(s) 625, 833
TspDTI ATGAA 2 cut(s) 132, 861
TspRI CASTG 2 cut(s) 228, 1119
Tth111I GACNNNGTC 1 cut(s) 740
VpaK11BI GGWCC 2 cut(s) 4, 860
XapI RAATTY 2 cut(s) 466, 1193
XhoI CTCGAG 1 cut(s) 1083
XmiI GTMKAC 1 cut(s) 50
XmnI GAANNNNTTC 1 cut(s) 852
XspI CTAG 2 cut(s) 240, 729
ZrmI AGTACT 1 cut(s) 474
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.