MD16G1106100.v1.1

Belongs to the actin family

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr16
Physical Location & Seq
Forward (+)
7450473 .. 7455032
4560 bp
Loading structure...
UTR
Exon/CDS
Intron
MD16G1106100.v1.1.491

Sequence Viewer

Length: 1284 bp
ATGGACCCGGCCTCTCGCCCAGCTGTAGTAATCGACAATGGAAGTGGGTATACTAAAATGGGTTTCGCGGGAAATGTCGAGCCATGTTACACTGTTCCGACTGTAGTTGCATTAAACGAATCGTTTTTGAACCCGTCCAGAACCTCCTCCAAGTCCGGCTGGATAGCGCAGCACAACGCTGGCGTGATGGCTGATCTTGATTTCTTTATTGGGGATGAGGCGCTGGAAAGATCTCGATCAAGTACAACTTACAATCTAAGCTATCCCGTTCGACAGGGCCAAGTCGAGAATTGGGATTCAATGGAGCGGTTCTGGCAGCAAAGTATATTTAACTACTTGCGTTGTGATCCTGAAGACCATTATTTTCTTTTAACCGAGAGTCCGCTTACTGCCCCGGAGAGCCGGGAGTATACCGGTGAAATCATGTTCGAAACTTTCAATGTTCCTGGCCTTTACATTGCCGTGAATTCGGTACTTGCTCTTGCAGCTGGTTACACTACCTCCAAGTGTGAGATGACAGGGGTTGTAGTAGACGTTGGAGATGGGGCAACTCATATTGTTCCTGTTGCAGAAGGTTATGTTATTGGGAGCAGCATCAAGTCAGTTCCTATTGCCGGGAAAGATGTCACTCTCTTCGTCCAGCAGCTTATGCGGGAAAGAGGAGAGAATGTGCCACCAGACGACTCCTTTGATGTAGCTCGCAGAGTGAAGGAAATGTATTGCTATACTAGTTCTGATATTGTCAAGGAGTTTAATAAGCACGATAAAGAACCATCCAAGTATATTAAGCAATGGAGAGGCATCAAACCAAAAACAGGGGCGCCCTACTCTTGTGACATTGGCTATGAACGATTTCTTGGCCCAGAGGTTTTCTTCAATCCTGAGATTTATAGCACCGACTTCACCACTCCCTTACCCGTTGTAATTGACAAGTGTATTCAGTCTGCTCCAATTGACACTAGGAGGTCTTTGTATAAGAATATAGTGTTGTCTGGAGGTTCAACCATGTTCAAGGACTTCCATAGGAGGTTGCAACGGGATATAAAGAAGATTGTGGATGCCCGGCTTCTTGCATCTGAAGCTCGAGTTGGTGGAGAAGTAAAATCACATCCAGTGGAAGTGAATGTAGTTAGCCATCCCATCCAGAGATTTGCAGTTTGGTTTGGCGGCTCAGTACTTGCATCCACACCTGAATTCTTTGCAGCTTGCCATACAAAAGAAGAGTATGAGGAATACGGTGCAAGCATATGCAGAACAAATCCTGTTTTCAAGGGGATGTATTGA

Protein Analysis

428

Amino Acids

47.75

Weight (kDa)

5.52

Isoelectric Point (pI)

43.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Actin PF00022 7 - 418 9e-80 Actin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 820
AccBSI CCGCTC 1 cut(s) 307
AccI GTMKAC 3 cut(s) 50, 410, 531
AccII CGCG 1 cut(s) 68
AciI CCGC 5 cut(s) 68, 307, 383, 652, 1167
AclWI GGATC 1 cut(s) 341
AcsI RAATTY 2 cut(s) 466, 1193
AcuI CTGAAG 2 cut(s) 372, 1098
AcyI GRCGYC 1 cut(s) 821
AfaI GTAC 3 cut(s) 244, 474, 1176
AfiI CCNNNNNNNGG 2 cut(s) 614, 815
AgeI ACCGGT 1 cut(s) 413
AgsI TTSAA 7 cut(s) 130, 300, 439, 877, 1002, 1012, 1270
AhlI ACTAGT 1 cut(s) 728
AjnI CCWGG 1 cut(s) 445
AjuI GAANNNNNNNTTGG 4 cut(s) 840, 872, 1071, 1103
AluBI AGCT 7 cut(s) 23, 261, 488, 646, 698, 1082, 1205
AluI AGCT 7 cut(s) 23, 261, 488, 646, 698, 1082, 1205
AlwI GGATC 1 cut(s) 341
Ama87I CYCGRG 1 cut(s) 1083
AoxI GGCC 4 cut(s) 9, 277, 448, 859
ApeKI GCWGC 6 cut(s) 169, 316, 485, 591, 643, 1202
ApoI RAATTY 2 cut(s) 466, 1193
ArsI GACNNNNNNTTYG 2 cut(s) 671, 703
AsiGI ACCGGT 1 cut(s) 413
Asp700I GAANNNNTTC 1 cut(s) 852
AspLEI GCGC 3 cut(s) 169, 223, 823
AspS9I GGNCC 3 cut(s) 4, 277, 860
AsuC2I CCSGG 5 cut(s) 8, 395, 404, 616, 1063
AsuHPI GGTGA 2 cut(s) 428, 895
AsuII TTCGAA 1 cut(s) 429
AvaI CYCGRG 1 cut(s) 1083
AvaII GGWCC 1 cut(s) 4
BanI GGYRCC 1 cut(s) 820
BarI GAAGNNNNNNTAC 2 cut(s) 34, 66
BbsI GAAGAC 1 cut(s) 360
BbvI GCAGC 6 cut(s) 181, 328, 497, 603, 655, 1214
BccI CCATC 5 cut(s) 181, 536, 781, 1143, 1148
BceAI ACGGC 1 cut(s) 446
BciT130I CCWGG 1 cut(s) 447
BcnI CCSGG 5 cut(s) 8, 395, 404, 616, 1063
BcuI ACTAGT 1 cut(s) 728
BfaI CTAG 2 cut(s) 729, 960
BfmI CTRYAG 2 cut(s) 24, 102
BfoI RGCGCY 2 cut(s) 224, 824
BglII AGATCT 1 cut(s) 230
BisI GCNGC 7 cut(s) 170, 317, 486, 592, 644, 1168, 1203
BlsI GCNGC 7 cut(s) 171, 318, 487, 593, 645, 1169, 1204
BmcAI AGTACT 1 cut(s) 1176
Bme1390I CCNGG 6 cut(s) 8, 395, 404, 447, 616, 1063
Bme18I GGWCC 1 cut(s) 4
BmeT110I CYCGRG 1 cut(s) 1083
BmgT120I GGNCC 3 cut(s) 4, 277, 860
BmiI GGNNCC 2 cut(s) 6, 822
BmrFI CCNGG 6 cut(s) 8, 395, 404, 447, 616, 1063
BmsI GCATC 5 cut(s) 603, 810, 1048, 1082, 1190
BpiI GAAGAC 1 cut(s) 360
BpmI CTGGAG 1 cut(s) 1014
Bpu14I TTCGAA 1 cut(s) 429
BpuMI CCSGG 5 cut(s) 8, 395, 404, 616, 1063
BsaBI GATNNNNATC 1 cut(s) 235
BsaHI GRCGYC 1 cut(s) 821
BsaJI CCNNGG 1 cut(s) 393
BsaWI WCCGGW 1 cut(s) 413
BsaXI ACNNNNNCTCC 4 cut(s) 485, 515, 654, 684
Bsc4I CCNNNNNNNGG 2 cut(s) 614, 815
Bse118I RCCGGY 1 cut(s) 413
Bse1I ACTGG 1 cut(s) 1112
Bse3DI GCAATG 2 cut(s) 456, 797
Bse8I GATNNNNATC 1 cut(s) 235
BseBI CCWGG 1 cut(s) 447
BseDI CCNNGG 1 cut(s) 393
BseGI GGATG 8 cut(s) 220, 773, 1063, 1108, 1135, 1140, 1181, 1281
BseJI GATNNNNATC 1 cut(s) 235
BseLI CCNNNNNNNGG 2 cut(s) 614, 815
BseMI GCAATG 2 cut(s) 456, 797
BseMII CTCAG 2 cut(s) 873, 1185
BseNI ACTGG 1 cut(s) 1112
BseRI GAGGAG 2 cut(s) 136, 675
BseXI GCAGC 6 cut(s) 181, 328, 497, 603, 655, 1214
BseYI CCCAGC 1 cut(s) 19
Bsh1236I CGCG 1 cut(s) 68
BshFI GGCC 4 cut(s) 11, 279, 450, 861
BshNI GGYRCC 1 cut(s) 820
BshTI ACCGGT 1 cut(s) 413
BsiHKCI CYCGRG 1 cut(s) 1083
BsiSI CCGG 7 cut(s) 8, 156, 395, 403, 414, 615, 1063
BslI CCNNNNNNNGG 2 cut(s) 614, 815
BsnI GGCC 4 cut(s) 11, 279, 450, 861
BsoBI CYCGRG 1 cut(s) 1083
Bsp119I TTCGAA 1 cut(s) 429
Bsp143I GATC 4 cut(s) 193, 230, 236, 346
BspACI CCGC 5 cut(s) 68, 307, 383, 652, 1167
BspANI GGCC 4 cut(s) 11, 279, 450, 861
BspCNI CTCAG 2 cut(s) 874, 1184
BspFNI CGCG 1 cut(s) 68
BspLI GGNNCC 2 cut(s) 6, 822
BspPI GGATC 1 cut(s) 341
BspT104I TTCGAA 1 cut(s) 429
BspT107I GGYRCC 1 cut(s) 820
BsrBI CCGCTC 1 cut(s) 307
BsrDI GCAATG 2 cut(s) 456, 797
BsrFI RCCGGY 1 cut(s) 413
BsrI ACTGG 1 cut(s) 1112
BssAI RCCGGY 1 cut(s) 413
BssECI CCNNGG 1 cut(s) 393
BssMI GATC 4 cut(s) 193, 230, 236, 346
BssNAI GTATAC 2 cut(s) 51, 411
BssNI GRCGYC 1 cut(s) 821
Bst1107I GTATAC 2 cut(s) 51, 411
Bst2UI CCWGG 1 cut(s) 447
Bst4CI ACNGT 3 cut(s) 94, 103, 1238
Bst6I CTCTTC 2 cut(s) 638, 1215
BstACI GRCGYC 1 cut(s) 821
BstAPI GCANNNNNTGC 1 cut(s) 649
BstBI TTCGAA 1 cut(s) 429
BstC8I GCNNGC 4 cut(s) 181, 700, 1207, 1243
BstDEI CTNAG 3 cut(s) 257, 882, 1171
BstF5I GGATG 8 cut(s) 220, 773, 1063, 1108, 1135, 1140, 1181, 1281
BstFNI CGCG 1 cut(s) 68
BstH2I RGCGCY 2 cut(s) 224, 824
BstHHI GCGC 3 cut(s) 169, 223, 823
BstKTI GATC 4 cut(s) 196, 233, 239, 349
BstMBI GATC 4 cut(s) 193, 230, 236, 346
BstMWI GCNNNNNNNGC 4 cut(s) 313, 485, 649, 1079
BstNI CCWGG 1 cut(s) 447
BstSCI CCNGG 6 cut(s) 6, 393, 402, 445, 614, 1061
BstSFI CTRYAG 2 cut(s) 24, 102
BstUI CGCG 1 cut(s) 68
BstV1I GCAGC 6 cut(s) 181, 328, 497, 603, 655, 1214
BstV2I GAAGAC 1 cut(s) 360
BstX2I RGATCY 1 cut(s) 230
BstYI RGATCY 1 cut(s) 230
BstZ17I GTATAC 2 cut(s) 51, 411
BsuRI GGCC 4 cut(s) 11, 279, 450, 861
BtsCI GGATG 8 cut(s) 220, 773, 1063, 1108, 1135, 1140, 1181, 1281
BtsIMutI CAGTG 2 cut(s) 90, 1119
Cac8I GCNNGC 4 cut(s) 181, 700, 1207, 1243
CfoI GCGC 3 cut(s) 169, 223, 823
Cfr10I RCCGGY 1 cut(s) 413
Cfr13I GGNCC 3 cut(s) 4, 277, 860
Csp6I GTAC 3 cut(s) 243, 473, 1175
CspAI ACCGGT 1 cut(s) 413
CspCI CAANNNNNGTGG 2 cut(s) 25, 60
CviAII CATG 3 cut(s) 84, 424, 1006
CviQI GTAC 3 cut(s) 243, 473, 1175
DdeI CTNAG 3 cut(s) 257, 882, 1171
DinI GGCGCC 1 cut(s) 822
DpnI GATC 4 cut(s) 195, 232, 238, 348
DpnII GATC 4 cut(s) 193, 230, 236, 346
Eam1104I CTCTTC 2 cut(s) 638, 1215
EarI CTCTTC 2 cut(s) 638, 1215
Eco47I GGWCC 1 cut(s) 4
Eco57I CTGAAG 2 cut(s) 372, 1098
Eco88I CYCGRG 1 cut(s) 1083
EcoRI GAATTC 2 cut(s) 466, 1193
EcoRII CCWGG 1 cut(s) 445
EgeI GGCGCC 1 cut(s) 822
EheI GGCGCC 1 cut(s) 822
FaeI CATG 3 cut(s) 87, 427, 1009
FalI AAGNNNNNCTT 2 cut(s) 232, 264
FatI CATG 3 cut(s) 83, 423, 1005
FauI CCCGC 2 cut(s) 61, 645
FauNDI CATATG 1 cut(s) 1247
FblI GTMKAC 3 cut(s) 50, 410, 531
Fnu4HI GCNGC 7 cut(s) 170, 317, 486, 592, 644, 1168, 1203
FokI GGATG 7 cut(s) 227, 760, 1070, 1095, 1122, 1127, 1168
Fsp4HI GCNGC 7 cut(s) 170, 317, 486, 592, 644, 1168, 1203
FspBI CTAG 2 cut(s) 729, 960
GlaI GCGC 3 cut(s) 168, 222, 822
GluI GCNGC 7 cut(s) 170, 317, 486, 592, 644, 1168, 1203
GsaI CCCAGC 1 cut(s) 23
GsuI CTGGAG 1 cut(s) 1014
HaeII RGCGCY 2 cut(s) 224, 824
HaeIII GGCC 4 cut(s) 11, 279, 450, 861
HapII CCGG 7 cut(s) 8, 156, 395, 403, 414, 615, 1063
HhaI GCGC 3 cut(s) 169, 223, 823
Hin1I GRCGYC 1 cut(s) 821
Hin1II CATG 3 cut(s) 87, 427, 1009
Hin6I GCGC 3 cut(s) 167, 221, 821
HinP1I GCGC 3 cut(s) 167, 221, 821
HinfI GANTC 4 cut(s) 119, 296, 379, 683
HpaII CCGG 7 cut(s) 8, 156, 395, 403, 414, 615, 1063
HphI GGTGA 2 cut(s) 428, 895
Hpy166II GTNNAC 3 cut(s) 51, 411, 532
Hpy188I TCNGA 3 cut(s) 99, 736, 1078
Hpy188III TCNNGA 8 cut(s) 138, 197, 234, 286, 350, 881, 993, 1144
Hpy8I GTNNAC 3 cut(s) 51, 411, 532
HpyAV CCTTC 2 cut(s) 566, 703
HpyCH4III ACNGT 3 cut(s) 94, 103, 1238
HpyCH4IV ACGT 1 cut(s) 534
HpyF10VI GCNNNNNNNGC 4 cut(s) 313, 485, 649, 1079
HpyF3I CTNAG 3 cut(s) 257, 882, 1171
HpySE526I ACGT 1 cut(s) 534
Hsp92I GRCGYC 1 cut(s) 821
Hsp92II CATG 3 cut(s) 87, 427, 1009
HspAI GCGC 3 cut(s) 167, 221, 821
KasI GGCGCC 1 cut(s) 820
Kzo9I GATC 4 cut(s) 193, 230, 236, 346
LmnI GCTCC 3 cut(s) 304, 588, 952
Lsp1109I GCAGC 6 cut(s) 181, 328, 497, 603, 655, 1214
LweI GCATC 5 cut(s) 603, 810, 1048, 1082, 1190
MaeI CTAG 2 cut(s) 729, 960
MaeII ACGT 1 cut(s) 534
MaeIII GTNAC 4 cut(s) 86, 491, 625, 833
MalI GATC 4 cut(s) 195, 232, 238, 348
MbiI CCGCTC 1 cut(s) 307
MboI GATC 4 cut(s) 193, 230, 236, 346
MboII GAAGA 5 cut(s) 365, 625, 865, 1060, 1232
MfeI CAATTG 1 cut(s) 951
MflI RGATCY 1 cut(s) 230
MluCI AATT 5 cut(s) 289, 466, 924, 951, 1193
Mly113I GGCGCC 1 cut(s) 821
MlyI GAGTC 2 cut(s) 388, 677
MmeI TCCRAC 2 cut(s) 122, 517
MroXI GAANNNNTTC 1 cut(s) 852
MseI TTAA 5 cut(s) 113, 330, 371, 753, 786
MslI CAYNNNNRTG 1 cut(s) 461
MspA1I CMGCKG 2 cut(s) 23, 488
MspI CCGG 7 cut(s) 8, 156, 395, 403, 414, 615, 1063
MspR9I CCNGG 6 cut(s) 8, 395, 404, 447, 616, 1063
MunI CAATTG 1 cut(s) 951
MvaI CCWGG 1 cut(s) 447
MvnI CGCG 1 cut(s) 68
MwoI GCNNNNNNNGC 4 cut(s) 313, 485, 649, 1079
NarI GGCGCC 1 cut(s) 821
NciI CCSGG 5 cut(s) 8, 395, 404, 616, 1063
NdeI CATATG 1 cut(s) 1247
NdeII GATC 4 cut(s) 193, 230, 236, 346
NlaIII CATG 3 cut(s) 87, 427, 1009
NlaIV GGNNCC 2 cut(s) 6, 822
NmuCI GTSAC 2 cut(s) 625, 833
NspV TTCGAA 1 cut(s) 429
PaeR7I CTCGAG 1 cut(s) 1083
PdmI GAANNNNTTC 1 cut(s) 852
PfeI GAWTC 2 cut(s) 119, 296
PinAI ACCGGT 1 cut(s) 413
PkrI GCNGC 7 cut(s) 171, 318, 487, 593, 645, 1169, 1204
PleI GAGTC 2 cut(s) 387, 677
PluTI GGCGCC 1 cut(s) 824
PpsI GAGTC 2 cut(s) 387, 677
Psp6I CCWGG 1 cut(s) 445
PspFI CCCAGC 1 cut(s) 19
PspGI CCWGG 1 cut(s) 445
PspN4I GGNNCC 2 cut(s) 6, 822
PspPI GGNCC 3 cut(s) 4, 277, 860
PspXI VCTCGAGB 1 cut(s) 1083
PsuI RGATCY 1 cut(s) 230
PvuII CAGCTG 2 cut(s) 23, 488
RsaI GTAC 3 cut(s) 244, 474, 1176
RsaNI GTAC 3 cut(s) 243, 473, 1175
RseI CAYNNNNRTG 1 cut(s) 461
SaqAI TTAA 5 cut(s) 113, 330, 371, 753, 786
SatI GCNGC 7 cut(s) 170, 317, 486, 592, 644, 1168, 1203
Sau3AI GATC 4 cut(s) 193, 230, 236, 346
Sau96I GGNCC 3 cut(s) 4, 277, 860
ScaI AGTACT 1 cut(s) 1176
SchI GAGTC 2 cut(s) 388, 677
ScrFI CCNGG 6 cut(s) 8, 395, 404, 447, 616, 1063
SfaNI GCATC 5 cut(s) 603, 810, 1048, 1082, 1190
SfcI CTRYAG 2 cut(s) 24, 102
SfoI GGCGCC 1 cut(s) 822
Sfr274I CTCGAG 1 cut(s) 1083
SfuI TTCGAA 1 cut(s) 429
SinI GGWCC 1 cut(s) 4
SlaI CTCGAG 1 cut(s) 1083
SmiMI CAYNNNNRTG 1 cut(s) 461
SmlI CTYRAG 1 cut(s) 1083
SmoI CTYRAG 1 cut(s) 1083
SpeI ACTAGT 1 cut(s) 728
Sse9I AATT 5 cut(s) 289, 466, 924, 951, 1193
SsiI CCGC 5 cut(s) 68, 307, 383, 652, 1167
SspDI GGCGCC 1 cut(s) 820
SspMI CTAG 2 cut(s) 729, 960
StyD4I CCNGG 6 cut(s) 6, 393, 402, 445, 614, 1061
TaaI ACNGT 3 cut(s) 94, 103, 1238
TaiI ACGT 1 cut(s) 537
TaqI TCGA 7 cut(s) 33, 78, 235, 271, 285, 429, 1084
TasI AATT 5 cut(s) 289, 466, 924, 951, 1193
TatI WGTACW 2 cut(s) 242, 1174
TauI GCSGC 1 cut(s) 1170
TfiI GAWTC 2 cut(s) 119, 296
Tru1I TTAA 5 cut(s) 113, 330, 371, 753, 786
Tru9I TTAA 5 cut(s) 113, 330, 371, 753, 786
TscAI CASTG 2 cut(s) 97, 1119
TseFI GTSAC 2 cut(s) 625, 833
TseI GCWGC 6 cut(s) 169, 316, 485, 591, 643, 1202
Tsp45I GTSAC 2 cut(s) 625, 833
TspDTI ATGAA 1 cut(s) 861
TspRI CASTG 2 cut(s) 97, 1119
VpaK11BI GGWCC 1 cut(s) 4
XapI RAATTY 2 cut(s) 466, 1193
XhoI CTCGAG 1 cut(s) 1083
XmiI GTMKAC 3 cut(s) 50, 410, 531
XmnI GAANNNNTTC 1 cut(s) 852
XspI CTAG 2 cut(s) 729, 960
ZrmI AGTACT 1 cut(s) 1176
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.