Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0008021

Physical Location & Seq

Genomic Coordinates Reverse (-)

48736807 .. 48741797

Gene Structure 4991 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG321400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1032 bp

ATGGACCCTGCCTCTCGCCCCGCAGTCGTCATCGACAACGGCACCGGGTATACTAAGATGGGGTTCGCCGGAAACGTCGAGCCGTGTTACATTGTCCCCACTGTAGTAGCTGTCAACGAATCGTTTCTGAACCAATCGAGAAGCACCTCCAAGGCGAGCTGGGTAGCGCAGCACAATGCGGGTGTGATGGCTGATCTTGATTTCTTCATAGGGGATGAGGCTTTGGAGAAGTCTCGATCCAGCTCTACTTATAATTTGAGCTATCCGATTAGTCATGGGCAGGTGGACAATTGGGATTCAATGGAGCGGTTTTGGCAGCAGTGTATATTTAACTATTTGCGTTGTGATCCTGAAGATCATTACTTTCTTTTGACTGAGAGCCCGCTTACTGCCCCGGAGAGCCGGGAGTACACCGGAGAAATTATGTTTGAGACTTTCAATGTTCCTGGCCTTTACATTGCTGTGAATTCGGTACTTGCTCTCGCAGCTGGCTACACTACCTCTAAGTGTGAGATGACAGGTGTTGTAGTAGATGTTGGAGATGGGGCAAGTCATGTTGTTCCTGTTGCAGAAGGTTATGTGATTGGGAGCAGCATCAAGTCAGTTCCGATTGCCGGGAGAGATGTCACTCTCTTTGTTCAACAGCTTATGCGGGAAAGAGGAGAGAACGTGCCACCAGAAGACTCCTTTGATGTAGCTCGCAAAGTGAAGGAAATGTATTGCTATACTAGTTCTGACATTGTCAAGGAGTTCAATAAGCACGATAAAGAACCATCCAAATATATTAAGCAATGGAAAGGCATTAAACCAAAGACAGGGGCACCCTACACTTGTGATATTGGCTATGAACGATTTCTCGGACCAGAGGTATTTTTTAATCCTGAGATTTATAGCAGCGATTTCACGACTCCATTACCAGTTGTAATTGACAAGTGTATTCAGTCTGCCCCAATTGACACCAGGAGGTCTTTGTATAAGGTACGTGGGCCTTGCAACACATTTTGTGCTAATTTGTTCATGGATAAAATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0000904 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005856 GO:0005885 GO:0006996 GO:0007010 GO:0007015 GO:0008150 GO:0009653 GO:0009825 GO:0009888 GO:0009987 GO:0010026 GO:0010090 GO:0015629 GO:0016043 GO:0016049 GO:0030029 GO:0030036 GO:0030154 GO:0032502 GO:0032989 GO:0032991 GO:0040007 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0048468 GO:0048856 GO:0048869 GO:0071840 GO:0090558 GO:0090626 GO:0097435

KEGG Pathways

Metabolic & Signaling

ko03015 ko04138 ko04530 map03015 map04138 map04530

Pfam Domains

Protein Families

Actin

Protein Analysis

343

Amino Acids

38.27

Weight (kDa)

5.04

Isoelectric Point (pI)

37.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Actin	PF00022	7 - 228	6e-50	Actin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008021)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13180
fragaria_vesca	FvH4_4g25180 FvH4_4g25180 FvH4_4g25180 FvH4_4g25180 FvH4_4g25180 FvH4_4g25180
malus_domestica	MD13G1105900.v1.1 MD16G1106100.v1.1
prunus_persica	Prupe.1G240300_v2.0.a1
pyrus_communis	pycom13g09190 pycom16g09020
rosa_chinensis	RchiOBHm_Chr4g0432381
rosa_laevigata	RLG00000006848
rosa_multiflora	Rmu_sc0001084.1_g000035
rosa_roxburghii	Rroxscaffold_5G00373830
rosa_rugosa	Rorug04G0258000 Rorug04G0258000 Rorug04G0258000
rosa_samantha	Rh4AG313900 Rh4BG321400 Rh4CG336500 Rh4DG317000
rosa_wichuraiana	Rw4G027280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	252
AarI	CACCTGC	1 cut(s)	271
Acc36I	ACCTGC	1 cut(s)	271
AccB1I	GGYRCC	2 cut(s)	41, 820
AccBSI	CCGCTC	1 cut(s)	307
AccI	GTMKAC	1 cut(s)	50
AciI	CCGC	5 cut(s)	21, 179, 307, 383, 652
AclWI	GGATC	2 cut(s)	231, 341
AcsI	RAATTY	1 cut(s)	466
AcuI	CTGAAG	1 cut(s)	372
AfaI	GTAC	3 cut(s)	410, 474, 981
AfiI	CCNNNNNNNGG	2 cut(s)	614, 815
AgsI	TTSAA	4 cut(s)	300, 439, 641, 754
AhlI	ACTAGT	1 cut(s)	728
AjnI	CCWGG	2 cut(s)	445, 959
AluBI	AGCT	7 cut(s)	110, 159, 243, 261, 488, 646, 698
AluI	AGCT	7 cut(s)	110, 159, 243, 261, 488, 646, 698
Alw26I	GTCTC	2 cut(s)	237, 425
AlwI	GGATC	2 cut(s)	231, 341
AoxI	GGCC	2 cut(s)	448, 986
ApeKI	GCWGC	5 cut(s)	169, 316, 485, 591, 894
ApoI	RAATTY	1 cut(s)	466
Asp700I	GAANNNNTTC	2 cut(s)	123, 852
AspLEI	GCGC	1 cut(s)	169
AspS9I	GGNCC	3 cut(s)	4, 860, 986
AsuC2I	CCSGG	4 cut(s)	46, 395, 404, 616
AvaII	GGWCC	2 cut(s)	4, 860
BaeGI	GKGCMC	1 cut(s)	823
BanI	GGYRCC	2 cut(s)	41, 820
BanII	GRGCYC	1 cut(s)	383
BbsI	GAAGAC	1 cut(s)	687
BbvI	GCAGC	5 cut(s)	181, 328, 497, 603, 906
BccI	CCATC	4 cut(s)	52, 181, 536, 781
BceAI	ACGGC	2 cut(s)	55, 67
BciT130I	CCWGG	2 cut(s)	447, 961
BcnI	CCSGG	4 cut(s)	46, 395, 404, 616
BcoDI	GTCTC	2 cut(s)	237, 425
BcuI	ACTAGT	1 cut(s)	728
BfaI	CTAG	1 cut(s)	729
BfmI	CTRYAG	1 cut(s)	102
BfuAI	ACCTGC	1 cut(s)	271
BisI	GCNGC	5 cut(s)	170, 317, 486, 592, 895
BlsI	GCNGC	5 cut(s)	171, 318, 487, 593, 896
Bme1390I	CCNGG	6 cut(s)	46, 395, 404, 447, 616, 961
Bme18I	GGWCC	2 cut(s)	4, 860
BmgT120I	GGNCC	3 cut(s)	4, 860, 986
BmiI	GGNNCC	3 cut(s)	6, 43, 822
BmrFI	CCNGG	6 cut(s)	46, 395, 404, 447, 616, 961
BmsI	GCATC	1 cut(s)	603
BpiI	GAAGAC	1 cut(s)	687
BpuMI	CCSGG	4 cut(s)	46, 395, 404, 616
BsaAI	YACGTR	1 cut(s)	983
BsaJI	CCNNGG	2 cut(s)	150, 393
BsaWI	WCCGGW	1 cut(s)	413
BsaXI	ACNNNNNCTCC	2 cut(s)	654, 684
Bsc4I	CCNNNNNNNGG	2 cut(s)	614, 815
Bse1I	ACTGG	1 cut(s)	917
Bse3DI	GCAATG	2 cut(s)	456, 797
BseBI	CCWGG	2 cut(s)	447, 961
BseDI	CCNNGG	2 cut(s)	150, 393
BseGI	GGATG	2 cut(s)	220, 773
BseLI	CCNNNNNNNGG	2 cut(s)	614, 815
BseMI	GCAATG	2 cut(s)	456, 797
BseMII	CTCAG	2 cut(s)	366, 873
BseNI	ACTGG	1 cut(s)	917
BseRI	GAGGAG	1 cut(s)	675
BseSI	GKGCMC	1 cut(s)	823
BseXI	GCAGC	5 cut(s)	181, 328, 497, 603, 906
BseYI	CCCAGC	1 cut(s)	159
BshFI	GGCC	2 cut(s)	450, 988
BshNI	GGYRCC	2 cut(s)	41, 820
BsiSI	CCGG	6 cut(s)	45, 69, 395, 403, 414, 615
BslFI	GGGAC	1 cut(s)	80
BslI	CCNNNNNNNGG	2 cut(s)	614, 815
BsmAI	GTCTC	2 cut(s)	237, 425
BsmFI	GGGAC	1 cut(s)	80
BsnI	GGCC	2 cut(s)	450, 988
Bsp1286I	GDGCHC	2 cut(s)	383, 823
Bsp143I	GATC	4 cut(s)	193, 236, 346, 355
BspACI	CCGC	5 cut(s)	21, 179, 307, 383, 652
BspANI	GGCC	2 cut(s)	450, 988
BspCNI	CTCAG	2 cut(s)	367, 874
BspLI	GGNNCC	3 cut(s)	6, 43, 822
BspMI	ACCTGC	1 cut(s)	271
BspPI	GGATC	2 cut(s)	231, 341
BspT107I	GGYRCC	2 cut(s)	41, 820
BsrBI	CCGCTC	1 cut(s)	307
BsrDI	GCAATG	2 cut(s)	456, 797
BsrI	ACTGG	1 cut(s)	917
BssECI	CCNNGG	2 cut(s)	150, 393
BssMI	GATC	4 cut(s)	193, 236, 346, 355
BssNAI	GTATAC	1 cut(s)	51
BssT1I	CCWWGG	1 cut(s)	150
Bst1107I	GTATAC	1 cut(s)	51
Bst2UI	CCWGG	2 cut(s)	447, 961
Bst4CI	ACNGT	1 cut(s)	103
BstBAI	YACGTR	1 cut(s)	983
BstC8I	GCNNGC	4 cut(s)	157, 383, 490, 700
BstDEI	CTNAG	4 cut(s)	54, 375, 504, 882
BstF5I	GGATG	2 cut(s)	220, 773
BstHHI	GCGC	1 cut(s)	169
BstKTI	GATC	4 cut(s)	196, 239, 349, 358
BstMAI	GTCTC	2 cut(s)	237, 425
BstMBI	GATC	4 cut(s)	193, 236, 346, 355
BstMWI	GCNNNNNNNGC	2 cut(s)	313, 485
BstNI	CCWGG	2 cut(s)	447, 961
BstSCI	CCNGG	6 cut(s)	44, 393, 402, 445, 614, 959
BstSFI	CTRYAG	1 cut(s)	102
BstSLI	GKGCMC	1 cut(s)	823
BstV1I	GCAGC	5 cut(s)	181, 328, 497, 603, 906
BstV2I	GAAGAC	1 cut(s)	687
BstZ17I	GTATAC	1 cut(s)	51
BsuRI	GGCC	2 cut(s)	450, 988
BtsCI	GGATG	2 cut(s)	220, 773
BtsI	GCAGTG	1 cut(s)	326
BtsIMutI	CAGTG	2 cut(s)	99, 326
BveI	ACCTGC	1 cut(s)	271
Cac8I	GCNNGC	4 cut(s)	157, 383, 490, 700
CfoI	GCGC	1 cut(s)	169
Cfr13I	GGNCC	3 cut(s)	4, 860, 986
Csp6I	GTAC	3 cut(s)	409, 473, 980
CviAII	CATG	3 cut(s)	275, 554, 1018
CviQI	GTAC	3 cut(s)	409, 473, 980
DdeI	CTNAG	4 cut(s)	54, 375, 504, 882
DpnI	GATC	4 cut(s)	195, 238, 348, 357
DpnII	GATC	4 cut(s)	193, 236, 346, 355
Eco130I	CCWWGG	1 cut(s)	150
Eco24I	GRGCYC	1 cut(s)	383
Eco47I	GGWCC	2 cut(s)	4, 860
Eco57I	CTGAAG	1 cut(s)	372
EcoRI	GAATTC	1 cut(s)	466
EcoRII	CCWGG	2 cut(s)	445, 959
EcoT14I	CCWWGG	1 cut(s)	150
EcoT38I	GRGCYC	1 cut(s)	383
ErhI	CCWWGG	1 cut(s)	150
FaeI	CATG	3 cut(s)	278, 557, 1021
FaqI	GGGAC	1 cut(s)	80
FatI	CATG	3 cut(s)	274, 553, 1017
FauI	CCCGC	4 cut(s)	28, 172, 390, 645
FblI	GTMKAC	1 cut(s)	50
Fnu4HI	GCNGC	5 cut(s)	170, 317, 486, 592, 895
FokI	GGATG	2 cut(s)	227, 760
FriOI	GRGCYC	1 cut(s)	383
Fsp4HI	GCNGC	5 cut(s)	170, 317, 486, 592, 895
FspBI	CTAG	1 cut(s)	729
GlaI	GCGC	1 cut(s)	168
GluI	GCNGC	5 cut(s)	170, 317, 486, 592, 895
GsaI	CCCAGC	1 cut(s)	163
HaeIII	GGCC	2 cut(s)	450, 988
HapII	CCGG	6 cut(s)	45, 69, 395, 403, 414, 615
HhaI	GCGC	1 cut(s)	169
Hin1II	CATG	3 cut(s)	278, 557, 1021
Hin6I	GCGC	1 cut(s)	167
HinP1I	GCGC	1 cut(s)	167
HincII	GTYRAC	1 cut(s)	115
HindII	GTYRAC	1 cut(s)	115
HinfI	GANTC	4 cut(s)	119, 296, 683, 907
HpaII	CCGG	6 cut(s)	45, 69, 395, 403, 414, 615
Hpy166II	GTNNAC	4 cut(s)	51, 115, 286, 411
Hpy188I	TCNGA	5 cut(s)	129, 267, 609, 736, 860
Hpy188III	TCNNGA	6 cut(s)	138, 197, 234, 350, 881, 904
Hpy8I	GTNNAC	4 cut(s)	51, 115, 286, 411
Hpy99I	CGWCG	1 cut(s)	80
HpyAV	CCTTC	2 cut(s)	566, 703
HpyCH4III	ACNGT	1 cut(s)	103
HpyCH4IV	ACGT	3 cut(s)	75, 669, 982
HpyCH4V	TGCA	2 cut(s)	569, 993
HpyF10VI	GCNNNNNNNGC	2 cut(s)	313, 485
HpyF3I	CTNAG	4 cut(s)	54, 375, 504, 882
HpySE526I	ACGT	3 cut(s)	75, 669, 982
Hsp92II	CATG	3 cut(s)	278, 557, 1021
HspAI	GCGC	1 cut(s)	167
Kzo9I	GATC	4 cut(s)	193, 236, 346, 355
LmnI	GCTCC	2 cut(s)	304, 588
Lsp1109I	GCAGC	5 cut(s)	181, 328, 497, 603, 906
LweI	GCATC	1 cut(s)	603
MaeI	CTAG	1 cut(s)	729
MaeII	ACGT	3 cut(s)	75, 669, 982
MaeIII	GTNAC	2 cut(s)	86, 625
MalI	GATC	4 cut(s)	195, 238, 348, 357
MbiI	CCGCTC	1 cut(s)	307
MboI	GATC	4 cut(s)	193, 236, 346, 355
MboII	GAAGA	3 cut(s)	196, 365, 692
MfeI	CAATTG	2 cut(s)	289, 951
MhlI	GDGCHC	2 cut(s)	383, 823
MluCI	AATT	7 cut(s)	253, 289, 420, 466, 924, 951, 1009
MlyI	GAGTC	2 cut(s)	677, 901
MmeI	TCCRAC	1 cut(s)	517
MnlI	CCTC	7 cut(s)	22, 157, 211, 511, 653, 859, 957
MroXI	GAANNNNTTC	2 cut(s)	123, 852
MseI	TTAA	4 cut(s)	330, 786, 804, 876
MslI	CAYNNNNRTG	1 cut(s)	461
MspA1I	CMGCKG	1 cut(s)	488
MspI	CCGG	6 cut(s)	45, 69, 395, 403, 414, 615
MspR9I	CCNGG	6 cut(s)	46, 395, 404, 447, 616, 961
MunI	CAATTG	2 cut(s)	289, 951
MvaI	CCWGG	2 cut(s)	447, 961
MwoI	GCNNNNNNNGC	2 cut(s)	313, 485
NciI	CCSGG	4 cut(s)	46, 395, 404, 616
NdeII	GATC	4 cut(s)	193, 236, 346, 355
NlaIII	CATG	3 cut(s)	278, 557, 1021
NlaIV	GGNNCC	3 cut(s)	6, 43, 822
NmuCI	GTSAC	1 cut(s)	625
PaqCI	CACCTGC	1 cut(s)	271
PcsI	WCGNNNNNNNCGW	1 cut(s)	72
PdmI	GAANNNNTTC	2 cut(s)	123, 852
PfeI	GAWTC	2 cut(s)	119, 296
PflFI	GACNNNGTC	1 cut(s)	740
PkrI	GCNGC	5 cut(s)	171, 318, 487, 593, 896
PleI	GAGTC	2 cut(s)	677, 901
PpsI	GAGTC	2 cut(s)	677, 901
Ppu21I	YACGTR	1 cut(s)	983
PsiI	TTATAA	1 cut(s)	252
Psp6I	CCWGG	2 cut(s)	445, 959
PspFI	CCCAGC	1 cut(s)	159
PspGI	CCWGG	2 cut(s)	445, 959
PspN4I	GGNNCC	3 cut(s)	6, 43, 822
PspPI	GGNCC	3 cut(s)	4, 860, 986
PsyI	GACNNNGTC	1 cut(s)	740
PvuII	CAGCTG	1 cut(s)	488
RsaI	GTAC	3 cut(s)	410, 474, 981
RsaNI	GTAC	3 cut(s)	409, 473, 980
RseI	CAYNNNNRTG	1 cut(s)	461
SaqAI	TTAA	4 cut(s)	330, 786, 804, 876
SatI	GCNGC	5 cut(s)	170, 317, 486, 592, 895
Sau3AI	GATC	4 cut(s)	193, 236, 346, 355
Sau96I	GGNCC	3 cut(s)	4, 860, 986
SchI	GAGTC	2 cut(s)	677, 901
ScrFI	CCNGG	6 cut(s)	46, 395, 404, 447, 616, 961
SduI	GDGCHC	2 cut(s)	383, 823
SfaNI	GCATC	1 cut(s)	603
SfcI	CTRYAG	1 cut(s)	102
SinI	GGWCC	2 cut(s)	4, 860
SmiMI	CAYNNNNRTG	1 cut(s)	461
SpeI	ACTAGT	1 cut(s)	728
Sse9I	AATT	7 cut(s)	253, 289, 420, 466, 924, 951, 1009
SsiI	CCGC	5 cut(s)	21, 179, 307, 383, 652
SspMI	CTAG	1 cut(s)	729
StyD4I	CCNGG	6 cut(s)	44, 393, 402, 445, 614, 959
StyI	CCWWGG	1 cut(s)	150
TaaI	ACNGT	1 cut(s)	103
TaiI	ACGT	3 cut(s)	78, 672, 985
TaqI	TCGA	4 cut(s)	33, 78, 137, 235
TasI	AATT	7 cut(s)	253, 289, 420, 466, 924, 951, 1009
TatI	WGTACW	1 cut(s)	408
TfiI	GAWTC	2 cut(s)	119, 296
Tru1I	TTAA	4 cut(s)	330, 786, 804, 876
Tru9I	TTAA	4 cut(s)	330, 786, 804, 876
TscAI	CASTG	2 cut(s)	106, 326
TseFI	GTSAC	1 cut(s)	625
TseI	GCWGC	5 cut(s)	169, 316, 485, 591, 894
Tsp45I	GTSAC	1 cut(s)	625
TspDTI	ATGAA	3 cut(s)	196, 861, 1006
TspRI	CASTG	2 cut(s)	106, 326
Tth111I	GACNNNGTC	1 cut(s)	740
VpaK11BI	GGWCC	2 cut(s)	4, 860
XapI	RAATTY	1 cut(s)	466
XmiI	GTMKAC	1 cut(s)	50
XmnI	GAANNNNTTC	2 cut(s)	123, 852
XspI	CTAG	1 cut(s)	729

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.