Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0014213

Physical Location & Seq

Genomic Coordinates Reverse (-)

4550153 .. 4551620

Gene Structure 1468 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G13290.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 909 bp

ATGTATAATAATAACCAATATAGCTTCTCCGGTGACGAAGACTCCGTCGTCCTCAGCCTTGGACCTCCTGGCCAACAATACCCTAGCCATAACAAACCTACCAGTACTAAACCTTCTTCTGATCATGAGTTTAATCACCCATTAACAAACCCTAATGGTGTTACCGTTGCTCTTCATATCGGTCCTCCGAGTTCCGACAAAGAAACCCTTAGCGGCGGGAACAACCAAGAGGGTTTAACGGCGAGGCAGGGACAGTATTGGATCCCTTCACTTTCGCAGATCCTTGTCGGTCCCACTCAGTTCTCTTGTTCTGTCTGTAACAAAACTTTCAACCGCTTCAACAACATGCAGATGCATATGTGGGGTCATGGTTCGCAATACCGAAAAGGCCCAGAGTCGCTCAGAGGGACGAAGTCGTCATCTTCGATACTAAGGCTGCCATGTTACTGTTGTGCTGAAGGTTGTAAGAACAACATAGACCATCCAAGATCAAAGCCTCTCAAAGACTTTAGAACGCTTCAAACGCATTACAAGCGGAAGCACGGAGCAAAACCTTTTCGTTGCCGCAAGAAATGTGAAAAAACGTTTGCGGTGAGAGGCGATTGGAGAACGCATGAGAAAAATTGTGGGAAGTTGTGGTTTTGCGTTTGCGGGTCAGATTTTAAGCATAAGAGGTCACTTAAGGATCACGTTAGGGCTTTCGGTGATGGTCATGCGGCTCACACTGTAAGTGATCGGGTTGTAGGCATTGGGGACGCAGATGAAGATGATGAGGAGGAGGAAGAAGAGGAAGAAGATGATGTAGAAGAAGAAGATGCTCATGAAGAAAATGTTCGTGGAGAGAAGAACTATGGGATTAGATATGATCACTTTCGTCGTTATGGTCAGATTTCTGATGACAATTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009058 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009812 GO:0009813 GO:0009888 GO:0009889 GO:0009965 GO:0010016 GO:0010051 GO:0010087 GO:0010154 GO:0010305 GO:0010468 GO:0010556 GO:0010588 GO:0019219 GO:0019222 GO:0022414 GO:0022622 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048316 GO:0048364 GO:0048366 GO:0048367 GO:0048598 GO:0048608 GO:0048731 GO:0048825 GO:0048826 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0071704 GO:0080090 GO:0090698 GO:0099402 GO:0140110 GO:1901576 GO:1903506 GO:1905392 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2 zf-met

Protein Analysis

302

Amino Acids

34.35

Weight (kDa)

6.46

Isoelectric Point (pI)

45.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C2H2_STOP2_3rd	PF23115	148 - 182	2.3e-19	STOP2-like, C2H2-type zinc finger
C2CH-3rd_BIRD-IDD	PF22995	185 - 210	4.5e-10	BIRD-IDD transcription factor, third C2HC zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014213)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13290
fragaria_vesca	FvH4_4g28010
malus_domestica	MD13G1045800.v1.1 MD16G1047400.v1.1
prunus_persica	Prupe.1G306200_v2.0.a1
pyrus_communis	pycom16g04140
rosa_chinensis	RchiOBHm_Chr4g0435741
rosa_laevigata	RLG00000006563
rosa_multiflora	Rmu_co8077120.1_g000001 Rmu_sc0000051.1_g000019
rosa_roxburghii	Rroxscaffold_5G00376930
rosa_rugosa	Rorug04G0289200
rosa_samantha	Rh4AG343500 Rh4BG352200 Rh4CG366700 Rh4DG346100
rosa_wichuraiana	Rw4G029990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	47, 415
AciI	CCGC	8 cut(s)	213, 216, 334, 535, 565, 590, 651, 716
AclI	AACGTT	1 cut(s)	584
AclWI	GGATC	4 cut(s)	256, 269, 274, 693
AcoI	YGGCCR	1 cut(s)	70
AcuI	CTGAAG	1 cut(s)	477
AfaI	GTAC	1 cut(s)	106
AflII	CTTAAG	1 cut(s)	680
AgsI	TTSAA	3 cut(s)	331, 340, 521
AjnI	CCWGG	1 cut(s)	67
AluBI	AGCT	1 cut(s)	24
AluI	AGCT	1 cut(s)	24
AlwI	GGATC	4 cut(s)	256, 269, 274, 693
AoxI	GGCC	2 cut(s)	70, 388
ApeKI	GCWGC	1 cut(s)	436
ArsI	GACNNNNNNTTYG	2 cut(s)	30, 62
Asp700I	GAANNNNTTC	1 cut(s)	831
AspS9I	GGNCC	4 cut(s)	62, 182, 290, 389
AsuHPI	GGTGA	4 cut(s)	44, 128, 604, 716
AvaII	GGWCC	3 cut(s)	62, 182, 290
BalI	TGGCCA	1 cut(s)	72
BamHI	GGATCC	1 cut(s)	261
BarI	GAAGNNNNNNTAC	2 cut(s)	97, 129
BbsI	GAAGAC	1 cut(s)	45
BbvCI	CCTCAGC	1 cut(s)	53
BbvI	GCAGC	1 cut(s)	423
BccI	CCATC	2 cut(s)	489, 701
BceAI	ACGGC	1 cut(s)	255
BciT130I	CCWGG	1 cut(s)	69
BclI	TGATCA	2 cut(s)	121, 865
BfaI	CTAG	1 cut(s)	84
BfrI	CTTAAG	1 cut(s)	680
BisI	GCNGC	4 cut(s)	214, 437, 565, 717
BlsI	GCNGC	4 cut(s)	215, 438, 566, 718
BmcAI	AGTACT	1 cut(s)	106
Bme1390I	CCNGG	1 cut(s)	69
Bme18I	GGWCC	3 cut(s)	62, 182, 290
BmgT120I	GGNCC	4 cut(s)	62, 182, 290, 389
BmiI	GGNNCC	2 cut(s)	263, 292
BmrFI	CCNGG	1 cut(s)	69
BmsI	GCATC	2 cut(s)	342, 805
BpiI	GAAGAC	1 cut(s)	45
Bpu10I	CCTNAGC	2 cut(s)	53, 209
BsaJI	CCNNGG	1 cut(s)	58
BsaWI	WCCGGW	1 cut(s)	29
BsaXI	ACNNNNNCTCC	2 cut(s)	26, 56
Bse1I	ACTGG	1 cut(s)	102
BseBI	CCWGG	1 cut(s)	69
BseDI	CCNNGG	1 cut(s)	58
BseGI	GGATG	1 cut(s)	481
BseMII	CTCAG	3 cut(s)	67, 311, 415
BseNI	ACTGG	1 cut(s)	102
BseRI	GAGGAG	2 cut(s)	788, 791
BseXI	GCAGC	1 cut(s)	423
BshFI	GGCC	2 cut(s)	72, 390
BsiSI	CCGG	1 cut(s)	30
BslFI	GGGAC	4 cut(s)	264, 276, 421, 767
BsmFI	GGGAC	4 cut(s)	264, 276, 421, 767
BsnI	GGCC	2 cut(s)	72, 390
Bsp143I	GATC	7 cut(s)	121, 261, 279, 488, 685, 733, 865
BspACI	CCGC	8 cut(s)	213, 216, 334, 535, 565, 590, 651, 716
BspANI	GGCC	2 cut(s)	72, 390
BspCNI	CTCAG	3 cut(s)	66, 310, 414
BspHI	TCATGA	2 cut(s)	124, 820
BspLI	GGNNCC	2 cut(s)	263, 292
BspPI	GGATC	4 cut(s)	256, 269, 274, 693
BspQI	GCTCTTC	1 cut(s)	177
BspTI	CTTAAG	1 cut(s)	680
BsrI	ACTGG	1 cut(s)	102
BssECI	CCNNGG	1 cut(s)	58
BssMI	GATC	7 cut(s)	121, 261, 279, 488, 685, 733, 865
BssT1I	CCWWGG	1 cut(s)	58
Bst2UI	CCWGG	1 cut(s)	69
Bst4CI	ACNGT	4 cut(s)	166, 255, 449, 727
Bst6I	CTCTTC	2 cut(s)	177, 780
BstAFI	CTTAAG	1 cut(s)	680
BstDEI	CTNAG	5 cut(s)	53, 209, 297, 401, 431
BstF5I	GGATG	1 cut(s)	481
BstKTI	GATC	7 cut(s)	124, 264, 282, 491, 688, 736, 868
BstMBI	GATC	7 cut(s)	121, 261, 279, 488, 685, 733, 865
BstMWI	GCNNNNNNNGC	2 cut(s)	523, 532
BstNI	CCWGG	1 cut(s)	69
BstNSI	RCATGY	1 cut(s)	349
BstSCI	CCNGG	1 cut(s)	67
BstV1I	GCAGC	1 cut(s)	423
BstV2I	GAAGAC	1 cut(s)	45
BstX2I	RGATCY	2 cut(s)	261, 279
BstYI	RGATCY	2 cut(s)	261, 279
BsuRI	GGCC	2 cut(s)	72, 390
BtsCI	GGATG	1 cut(s)	481
BtsIMutI	CAGTG	1 cut(s)	723
CciI	TCATGA	2 cut(s)	124, 820
Cfr13I	GGNCC	4 cut(s)	62, 182, 290, 389
CseI	GACGC	1 cut(s)	764
Csp6I	GTAC	1 cut(s)	105
CviAII	CATG	7 cut(s)	125, 346, 368, 441, 614, 713, 821
CviJI	RGCY	9 cut(s)	24, 57, 72, 87, 390, 436, 496, 698, 719
CviKI_1	RGCY	9 cut(s)	24, 57, 72, 87, 390, 436, 496, 698, 719
CviQI	GTAC	1 cut(s)	105
DdeI	CTNAG	5 cut(s)	53, 209, 297, 401, 431
DpnI	GATC	7 cut(s)	123, 263, 281, 490, 687, 735, 867
DpnII	GATC	7 cut(s)	121, 261, 279, 488, 685, 733, 865
DrdI	GACNNNNNNGTC	2 cut(s)	47, 415
DseDI	GACNNNNNNGTC	2 cut(s)	47, 415
EaeI	YGGCCR	1 cut(s)	70
Eam1104I	CTCTTC	2 cut(s)	177, 780
EarI	CTCTTC	2 cut(s)	177, 780
Eco130I	CCWWGG	1 cut(s)	58
Eco47I	GGWCC	3 cut(s)	62, 182, 290
Eco57I	CTGAAG	1 cut(s)	477
EcoRII	CCWGG	1 cut(s)	67
EcoT14I	CCWWGG	1 cut(s)	58
EcoT22I	ATGCAT	1 cut(s)	357
ErhI	CCWWGG	1 cut(s)	58
FaeI	CATG	7 cut(s)	128, 349, 371, 444, 617, 716, 824
FalI	AAGNNNNNCTT	2 cut(s)	192, 224
FaqI	GGGAC	4 cut(s)	264, 276, 421, 767
FatI	CATG	7 cut(s)	124, 345, 367, 440, 613, 712, 820
FauI	CCCGC	2 cut(s)	209, 644
FauNDI	CATATG	1 cut(s)	357
FbaI	TGATCA	2 cut(s)	121, 865
Fnu4HI	GCNGC	4 cut(s)	214, 437, 565, 717
FokI	GGATG	1 cut(s)	468
Fsp4HI	GCNGC	4 cut(s)	214, 437, 565, 717
FspBI	CTAG	1 cut(s)	84
GluI	GCNGC	4 cut(s)	214, 437, 565, 717
HaeIII	GGCC	2 cut(s)	72, 390
HapII	CCGG	1 cut(s)	30
HgaI	GACGC	1 cut(s)	764
Hin1II	CATG	7 cut(s)	128, 349, 371, 444, 617, 716, 824
HinfI	GANTC	2 cut(s)	41, 395
HpaII	CCGG	1 cut(s)	30
HphI	GGTGA	4 cut(s)	44, 128, 604, 716
Hpy188I	TCNGA	7 cut(s)	121, 189, 196, 404, 658, 888, 895
Hpy188III	TCNNGA	2 cut(s)	125, 821
Hpy99I	CGWCG	2 cut(s)	50, 879
HpyAV	CCTTC	3 cut(s)	123, 276, 452
HpyCH4III	ACNGT	4 cut(s)	166, 255, 449, 727
HpyCH4IV	ACGT	2 cut(s)	584, 690
HpyCH4V	TGCA	2 cut(s)	349, 355
HpyF10VI	GCNNNNNNNGC	2 cut(s)	523, 532
HpyF3I	CTNAG	5 cut(s)	53, 209, 297, 401, 431
HpySE526I	ACGT	2 cut(s)	584, 690
Hsp92II	CATG	7 cut(s)	128, 349, 371, 444, 617, 716, 824
Ksp22I	TGATCA	2 cut(s)	121, 865
Kzo9I	GATC	7 cut(s)	121, 261, 279, 488, 685, 733, 865
LguI	GCTCTTC	1 cut(s)	177
LmnI	GCTCC	1 cut(s)	545
LpnPI	CCDG	6 cut(s)	43, 54, 81, 115, 233, 405
Lsp1109I	GCAGC	1 cut(s)	423
LweI	GCATC	2 cut(s)	342, 805
MaeI	CTAG	1 cut(s)	84
MaeII	ACGT	2 cut(s)	584, 690
MaeIII	GTNAC	5 cut(s)	32, 160, 317, 443, 675
MalI	GATC	7 cut(s)	123, 263, 281, 490, 687, 735, 867
MboI	GATC	7 cut(s)	121, 261, 279, 488, 685, 733, 865
MflI	RGATCY	2 cut(s)	261, 279
MlsI	TGGCCA	1 cut(s)	72
MluCI	AATT	2 cut(s)	622, 901
MluNI	TGGCCA	1 cut(s)	72
MlyI	GAGTC	2 cut(s)	35, 404
MmeI	TCCRAC	1 cut(s)	219
Mox20I	TGGCCA	1 cut(s)	72
Mph1103I	ATGCAT	1 cut(s)	357
MroXI	GAANNNNTTC	1 cut(s)	831
MscI	TGGCCA	1 cut(s)	72
MseI	TTAA	5 cut(s)	132, 143, 236, 663, 681
MslI	CAYNNNNRTG	1 cut(s)	350
Msp20I	TGGCCA	1 cut(s)	72
MspCI	CTTAAG	1 cut(s)	680
MspI	CCGG	1 cut(s)	30
MspR9I	CCNGG	1 cut(s)	69
MvaI	CCWGG	1 cut(s)	69
MwoI	GCNNNNNNNGC	2 cut(s)	523, 532
NdeI	CATATG	1 cut(s)	357
NdeII	GATC	7 cut(s)	121, 261, 279, 488, 685, 733, 865
NlaIII	CATG	7 cut(s)	128, 349, 371, 444, 617, 716, 824
NlaIV	GGNNCC	2 cut(s)	263, 292
NmuCI	GTSAC	2 cut(s)	32, 675
NsiI	ATGCAT	1 cut(s)	357
NspI	RCATGY	1 cut(s)	349
PagI	TCATGA	2 cut(s)	124, 820
PciSI	GCTCTTC	1 cut(s)	177
PcsI	WCGNNNNNNNCGW	2 cut(s)	42, 422
PdmI	GAANNNNTTC	1 cut(s)	831
PflFI	GACNNNGTC	2 cut(s)	44, 412
PkrI	GCNGC	4 cut(s)	215, 438, 566, 718
PleI	GAGTC	2 cut(s)	35, 403
PpsI	GAGTC	2 cut(s)	35, 403
Psp1406I	AACGTT	1 cut(s)	584
Psp6I	CCWGG	1 cut(s)	67
PspGI	CCWGG	1 cut(s)	67
PspN4I	GGNNCC	2 cut(s)	263, 292
PspPI	GGNCC	4 cut(s)	62, 182, 290, 389
PsuI	RGATCY	2 cut(s)	261, 279
PsyI	GACNNNGTC	2 cut(s)	44, 412
RsaI	GTAC	1 cut(s)	106
RsaNI	GTAC	1 cut(s)	105
RseI	CAYNNNNRTG	1 cut(s)	350
SapI	GCTCTTC	1 cut(s)	177
SaqAI	TTAA	5 cut(s)	132, 143, 236, 663, 681
SatI	GCNGC	4 cut(s)	214, 437, 565, 717
Sau3AI	GATC	7 cut(s)	121, 261, 279, 488, 685, 733, 865
Sau96I	GGNCC	4 cut(s)	62, 182, 290, 389
ScaI	AGTACT	1 cut(s)	106
SchI	GAGTC	2 cut(s)	35, 404
ScrFI	CCNGG	1 cut(s)	69
SetI	ASST	9 cut(s)	26, 67, 100, 115, 463, 556, 587, 677, 693
SfaNI	GCATC	2 cut(s)	342, 805
SinI	GGWCC	3 cut(s)	62, 182, 290
SmiMI	CAYNNNNRTG	1 cut(s)	350
SmlI	CTYRAG	1 cut(s)	680
SmoI	CTYRAG	1 cut(s)	680
Sse9I	AATT	2 cut(s)	622, 901
SsiI	CCGC	8 cut(s)	213, 216, 334, 535, 565, 590, 651, 716
SspMI	CTAG	1 cut(s)	84
StyD4I	CCNGG	1 cut(s)	67
StyI	CCWWGG	1 cut(s)	58
TaaI	ACNGT	4 cut(s)	166, 255, 449, 727
TaiI	ACGT	2 cut(s)	587, 693
TaqI	TCGA	1 cut(s)	425
TaqII	GACCGA	2 cut(s)	170, 278
TasI	AATT	2 cut(s)	622, 901
TatI	WGTACW	1 cut(s)	104
TauI	GCSGC	3 cut(s)	216, 567, 719
Tru1I	TTAA	5 cut(s)	132, 143, 236, 663, 681
Tru9I	TTAA	5 cut(s)	132, 143, 236, 663, 681
TscAI	CASTG	1 cut(s)	730
TseFI	GTSAC	2 cut(s)	32, 675
TseI	GCWGC	1 cut(s)	436
Tsp45I	GTSAC	2 cut(s)	32, 675
TspDTI	ATGAA	3 cut(s)	164, 777, 837
TspGWI	ACGGA	2 cut(s)	34, 558
TspRI	CASTG	1 cut(s)	730
Tth111I	GACNNNGTC	2 cut(s)	44, 412
Vha464I	CTTAAG	1 cut(s)	680
VpaK11BI	GGWCC	3 cut(s)	62, 182, 290
XceI	RCATGY	1 cut(s)	349
XmnI	GAANNNNTTC	1 cut(s)	831
XspI	CTAG	1 cut(s)	84
ZrmI	AGTACT	1 cut(s)	106
Zsp2I	ATGCAT	1 cut(s)	357

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.