Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0014213

Physical Location & Seq

Genomic Coordinates Forward (+)

62186101 .. 62188023

Gene Structure 1923 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG366700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 858 bp

ATGCATCACCAAGAAGATGAAGACGACTCGGTTTTTCTCACTCTCGGCCCTCCCGGACAGCCAGTTCACCGCCACATCCAACAATCATCCTCCTCCTCATCTACCCAGCCTCACCATCAAAACCCTAATTATAGCACAAACCATGAGGATGGTGTCACAGTAGCCCTTCACATTGGGCAGCCCTTTACCACTTCTGGACCTTCAAGCAACAACAACAACAACAACAATGTTCGCATTGGTGCTCCTATGGAAGGCCAGTACTGGATCCCTTCTCCAGCGCAAATCCTCGTCGGCCCAACTCAGTTCTCCTGCCCCGTCTGCGGCAAAACCTTCAACAGATACAACAACATGCAGATGCATATGTGGGGGCACGGCTCACAGTACCGGAAGGGACCAGAATCGTTGAGGGGAACGAAGCCATCTTCATCCATACTCCGTCTTCCATGTTACTGCTGCGCCGAGGGCTGCAGGAATAACATAGACCACCCGAGGTCAAGGCCGCTGAAAGACTTCAGAACTCTGCAGACACATTACAAGAGGAAGCACGGGACGAAGCCGTTCGGTTGCCGCAAATGCGGCAAGCCGTTTGCGGTGAGAGGAGACTGGAGAACGCACGAGAAGAACTGCGGCAAGCTCTGGTTCTGCATCTGCGGCTCGGATTTCAAGCACAAAAGGTCCCTCAAGGACCACGTGAGGAGTTTCGGTGATGGCCACGCGCAGTACGCTGTGGAGCTGTGCGCTGAAGCTGAGGAGGATGAAGAAGAAGATCTAGAGGATGAGGATGATAATGACGAAAGCAGGGACACTAATGGAGGAGGTCAGCATCATGGAGTTGGGTCTGTTTATTTTAACTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009058 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009812 GO:0009813 GO:0009888 GO:0009889 GO:0009965 GO:0010016 GO:0010051 GO:0010087 GO:0010154 GO:0010305 GO:0010468 GO:0010556 GO:0010588 GO:0019219 GO:0019222 GO:0022414 GO:0022622 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048316 GO:0048364 GO:0048366 GO:0048367 GO:0048598 GO:0048608 GO:0048731 GO:0048825 GO:0048826 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0071704 GO:0080090 GO:0090698 GO:0099402 GO:0140110 GO:1901576 GO:1903506 GO:1905392 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2 zf-met

Protein Analysis

285

Amino Acids

32.14

Weight (kDa)

6.67

Isoelectric Point (pI)

56.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C2H2_STOP2_3rd	PF23115	149 - 183	1.3e-19	STOP2-like, C2H2-type zinc finger
C2CH-3rd_BIRD-IDD	PF22995	186 - 210	3.2e-12	BIRD-IDD transcription factor, third C2HC zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014213)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13290
fragaria_vesca	FvH4_4g28010
malus_domestica	MD13G1045800.v1.1 MD16G1047400.v1.1
prunus_persica	Prupe.1G306200_v2.0.a1
pyrus_communis	pycom16g04140
rosa_chinensis	RchiOBHm_Chr4g0435741
rosa_laevigata	RLG00000006563
rosa_multiflora	Rmu_co8077120.1_g000001 Rmu_sc0000051.1_g000019
rosa_roxburghii	Rroxscaffold_5G00376930
rosa_rugosa	Rorug04G0289200
rosa_samantha	Rh4AG343500 Rh4BG352200 Rh4CG366700 Rh4DG346100
rosa_wichuraiana	Rw4G029990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	716
AciI	CCGC	8 cut(s)	70, 321, 500, 568, 576, 590, 627, 651
AclWI	GGATC	2 cut(s)	259, 272
AcoI	YGGCCR	1 cut(s)	709
AcuI	CTGAAG	2 cut(s)	496, 762
AcvI	CACGTG	1 cut(s)	691
AfaI	GTAC	3 cut(s)	260, 383, 722
AfiI	CCNNNNNNNGG	2 cut(s)	251, 320
AgsI	TTSAA	3 cut(s)	204, 334, 664
AloI	GAACNNNNNNTCC	2 cut(s)	48, 80
AluBI	AGCT	3 cut(s)	634, 733, 746
AluI	AGCT	3 cut(s)	634, 733, 746
Alw21I	GWGCWC	1 cut(s)	244
Alw26I	GTCTC	1 cut(s)	594
AlwI	GGATC	2 cut(s)	259, 272
Ama87I	CYCGRG	1 cut(s)	487
AoxI	GGCC	5 cut(s)	46, 253, 292, 497, 709
ApeKI	GCWGC	3 cut(s)	178, 453, 465
Asp700I	GAANNNNTTC	2 cut(s)	509, 557
AspLEI	GCGC	4 cut(s)	280, 458, 718, 740
AspS9I	GGNCC	6 cut(s)	47, 197, 293, 392, 675, 685
AsuC2I	CCSGG	1 cut(s)	54
AsuHPI	GGTGA	4 cut(s)	59, 104, 604, 716
AvaI	CYCGRG	1 cut(s)	487
AvaII	GGWCC	4 cut(s)	197, 392, 675, 685
BaeGI	GKGCMC	1 cut(s)	372
BalI	TGGCCA	1 cut(s)	711
BamHI	GGATCC	1 cut(s)	264
BauI	CACGAG	1 cut(s)	614
BbrPI	CACGTG	1 cut(s)	691
BbsI	GAAGAC	2 cut(s)	27, 431
Bbv12I	GWGCWC	1 cut(s)	244
BbvCI	CCTCAGC	1 cut(s)	747
BbvI	GCAGC	3 cut(s)	190, 440, 452
BccI	CCATC	4 cut(s)	123, 143, 427, 701
BceAI	ACGGC	3 cut(s)	388, 541, 568
BcnI	CCSGG	1 cut(s)	54
BcoDI	GTCTC	1 cut(s)	594
BfaI	CTAG	1 cut(s)	770
BfmI	CTRYAG	2 cut(s)	466, 521
BglII	AGATCT	1 cut(s)	766
BisI	GCNGC	9 cut(s)	179, 322, 454, 466, 500, 568, 577, 628, 652
BlsI	GCNGC	9 cut(s)	180, 323, 455, 467, 501, 569, 578, 629, 653
BmcAI	AGTACT	1 cut(s)	260
Bme1390I	CCNGG	1 cut(s)	54
Bme18I	GGWCC	4 cut(s)	197, 392, 675, 685
BmeT110I	CYCGRG	1 cut(s)	487
BmgT120I	GGNCC	6 cut(s)	47, 197, 293, 392, 675, 685
BmiI	GGNNCC	3 cut(s)	266, 393, 677
BmrFI	CCNGG	1 cut(s)	54
BmsI	GCATC	4 cut(s)	13, 345, 654, 832
BpiI	GAAGAC	2 cut(s)	27, 431
BpmI	CTGGAG	2 cut(s)	258, 625
Bpu10I	CCTNAGC	1 cut(s)	747
BpuEI	CTTGAG	1 cut(s)	665
BpuMI	CCSGG	1 cut(s)	54
BsaAI	YACGTR	1 cut(s)	691
BsaJI	CCNNGG	2 cut(s)	459, 488
BsaWI	WCCGGW	1 cut(s)	384
BsaXI	ACNNNNNCTCC	2 cut(s)	688, 718
Bsc4I	CCNNNNNNNGG	2 cut(s)	251, 320
Bse1I	ACTGG	4 cut(s)	62, 256, 266, 608
BseDI	CCNNGG	2 cut(s)	459, 488
BseGI	GGATG	7 cut(s)	75, 86, 154, 425, 760, 781, 787
BseLI	CCNNNNNNNGG	2 cut(s)	251, 320
BseMII	CTCAG	2 cut(s)	314, 738
BseNI	ACTGG	4 cut(s)	62, 256, 266, 608
BseRI	GAGGAG	6 cut(s)	82, 85, 612, 709, 764, 828
BseSI	GKGCMC	1 cut(s)	372
BseXI	GCAGC	3 cut(s)	190, 440, 452
BseYI	CCCAGC	1 cut(s)	105
Bsh1236I	CGCG	1 cut(s)	716
BshFI	GGCC	5 cut(s)	48, 255, 294, 499, 711
BsiHKAI	GWGCWC	1 cut(s)	244
BsiHKCI	CYCGRG	1 cut(s)	487
BsiSI	CCGG	2 cut(s)	54, 385
BslFI	GGGAC	4 cut(s)	405, 562, 661, 815
BslI	CCNNNNNNNGG	2 cut(s)	251, 320
BsmAI	GTCTC	1 cut(s)	594
BsmFI	GGGAC	4 cut(s)	405, 562, 661, 815
BsnI	GGCC	5 cut(s)	48, 255, 294, 499, 711
BsoBI	CYCGRG	1 cut(s)	487
Bsp1286I	GDGCHC	2 cut(s)	244, 372
Bsp143I	GATC	2 cut(s)	264, 766
BspACI	CCGC	8 cut(s)	70, 321, 500, 568, 576, 590, 627, 651
BspANI	GGCC	5 cut(s)	48, 255, 294, 499, 711
BspCNI	CTCAG	2 cut(s)	313, 739
BspFNI	CGCG	1 cut(s)	716
BspLI	GGNNCC	3 cut(s)	266, 393, 677
BspMAI	CTGCAG	2 cut(s)	470, 525
BspPI	GGATC	2 cut(s)	259, 272
BsrI	ACTGG	4 cut(s)	62, 256, 266, 608
BssECI	CCNNGG	2 cut(s)	459, 488
BssMI	GATC	2 cut(s)	264, 766
BssSI	CACGAG	1 cut(s)	614
Bst2BI	CACGAG	1 cut(s)	614
Bst4CI	ACNGT	2 cut(s)	160, 381
BstBAI	YACGTR	1 cut(s)	691
BstC8I	GCNNGC	2 cut(s)	581, 632
BstDEI	CTNAG	2 cut(s)	300, 747
BstENI	CCTNNNNNAGG	1 cut(s)	249
BstF5I	GGATG	7 cut(s)	75, 86, 154, 425, 760, 781, 787
BstFNI	CGCG	1 cut(s)	716
BstHHI	GCGC	4 cut(s)	280, 458, 718, 740
BstKTI	GATC	2 cut(s)	267, 769
BstMAI	GTCTC	1 cut(s)	594
BstMBI	GATC	2 cut(s)	264, 766
BstMWI	GCNNNNNNNGC	6 cut(s)	318, 462, 573, 576, 651, 722
BstNSI	RCATGY	1 cut(s)	352
BstSCI	CCNGG	1 cut(s)	52
BstSFI	CTRYAG	2 cut(s)	466, 521
BstSLI	GKGCMC	1 cut(s)	372
BstUI	CGCG	1 cut(s)	716
BstV1I	GCAGC	3 cut(s)	190, 440, 452
BstV2I	GAAGAC	2 cut(s)	27, 431
BstX2I	RGATCY	2 cut(s)	264, 766
BstXI	CCANNNNNNTGG	1 cut(s)	149
BstYI	RGATCY	2 cut(s)	264, 766
BsuRI	GGCC	5 cut(s)	48, 255, 294, 499, 711
BtsCI	GGATG	7 cut(s)	75, 86, 154, 425, 760, 781, 787
Cac8I	GCNNGC	2 cut(s)	581, 632
CfoI	GCGC	4 cut(s)	280, 458, 718, 740
Cfr13I	GGNCC	6 cut(s)	47, 197, 293, 392, 675, 685
Csp6I	GTAC	3 cut(s)	259, 382, 721
CviAII	CATG	4 cut(s)	143, 349, 444, 827
CviQI	GTAC	3 cut(s)	259, 382, 721
DdeI	CTNAG	2 cut(s)	300, 747
DpnI	GATC	2 cut(s)	266, 768
DpnII	GATC	2 cut(s)	264, 766
EaeI	YGGCCR	1 cut(s)	709
Eco47I	GGWCC	4 cut(s)	197, 392, 675, 685
Eco57I	CTGAAG	2 cut(s)	496, 762
Eco72I	CACGTG	1 cut(s)	691
Eco88I	CYCGRG	1 cut(s)	487
EcoNI	CCTNNNNNAGG	1 cut(s)	249
EcoO109I	RGGNCCY	1 cut(s)	675
EcoT22I	ATGCAT	2 cut(s)	6, 360
FaeI	CATG	4 cut(s)	146, 352, 447, 830
FaqI	GGGAC	4 cut(s)	405, 562, 661, 815
FatI	CATG	4 cut(s)	142, 348, 443, 826
FauNDI	CATATG	1 cut(s)	360
Fnu4HI	GCNGC	9 cut(s)	179, 322, 454, 466, 500, 568, 577, 628, 652
FokI	GGATG	7 cut(s)	62, 73, 161, 412, 767, 788, 794
Fsp4HI	GCNGC	9 cut(s)	179, 322, 454, 466, 500, 568, 577, 628, 652
FspBI	CTAG	1 cut(s)	770
GlaI	GCGC	4 cut(s)	279, 457, 717, 739
GluI	GCNGC	9 cut(s)	179, 322, 454, 466, 500, 568, 577, 628, 652
GsaI	CCCAGC	1 cut(s)	109
GsuI	CTGGAG	2 cut(s)	258, 625
HaeIII	GGCC	5 cut(s)	48, 255, 294, 499, 711
HapII	CCGG	2 cut(s)	54, 385
HhaI	GCGC	4 cut(s)	280, 458, 718, 740
Hin1II	CATG	4 cut(s)	146, 352, 447, 830
Hin6I	GCGC	4 cut(s)	278, 456, 716, 738
HinP1I	GCGC	4 cut(s)	278, 456, 716, 738
HinfI	GANTC	2 cut(s)	26, 398
HpaII	CCGG	2 cut(s)	54, 385
HphI	GGTGA	4 cut(s)	59, 104, 604, 716
Hpy166II	GTNNAC	1 cut(s)	67
Hpy188I	TCNGA	2 cut(s)	515, 658
Hpy188III	TCNNGA	2 cut(s)	195, 770
Hpy8I	GTNNAC	1 cut(s)	67
Hpy99I	CGWCG	1 cut(s)	293
HpyAV	CCTTC	6 cut(s)	176, 210, 245, 279, 340, 382
HpyCH4III	ACNGT	2 cut(s)	160, 381
HpyCH4IV	ACGT	1 cut(s)	690
HpyCH4V	TGCA	6 cut(s)	4, 352, 358, 468, 523, 645
HpyF10VI	GCNNNNNNNGC	6 cut(s)	318, 462, 573, 576, 651, 722
HpyF3I	CTNAG	2 cut(s)	300, 747
HpySE526I	ACGT	1 cut(s)	690
Hsp92II	CATG	4 cut(s)	146, 352, 447, 830
HspAI	GCGC	4 cut(s)	278, 456, 716, 738
Kzo9I	GATC	2 cut(s)	264, 766
LmnI	GCTCC	2 cut(s)	247, 730
Lsp1109I	GCAGC	3 cut(s)	190, 440, 452
LweI	GCATC	4 cut(s)	13, 345, 654, 832
MaeI	CTAG	1 cut(s)	770
MaeII	ACGT	1 cut(s)	690
MaeIII	GTNAC	2 cut(s)	154, 446
MalI	GATC	2 cut(s)	266, 768
MboI	GATC	2 cut(s)	264, 766
MboII	GAAGA	8 cut(s)	26, 32, 414, 431, 631, 770, 773, 776
MflI	RGATCY	2 cut(s)	264, 766
MhlI	GDGCHC	2 cut(s)	244, 372
MlsI	TGGCCA	1 cut(s)	711
MluCI	AATT	1 cut(s)	127
MluNI	TGGCCA	1 cut(s)	711
MlyI	GAGTC	1 cut(s)	20
MmeI	TCCRAC	1 cut(s)	103
Mox20I	TGGCCA	1 cut(s)	711
Mph1103I	ATGCAT	2 cut(s)	6, 360
MroXI	GAANNNNTTC	2 cut(s)	509, 557
MscI	TGGCCA	1 cut(s)	711
MseI	TTAA	2 cut(s)	849, 856
MslI	CAYNNNNRTG	2 cut(s)	147, 353
Msp20I	TGGCCA	1 cut(s)	711
MspA1I	CMGCKG	1 cut(s)	502
MspI	CCGG	2 cut(s)	54, 385
MspR9I	CCNGG	1 cut(s)	54
MvnI	CGCG	1 cut(s)	716
MwoI	GCNNNNNNNGC	6 cut(s)	318, 462, 573, 576, 651, 722
NciI	CCSGG	1 cut(s)	54
NdeI	CATATG	1 cut(s)	360
NdeII	GATC	2 cut(s)	264, 766
NlaIII	CATG	4 cut(s)	146, 352, 447, 830
NlaIV	GGNNCC	3 cut(s)	266, 393, 677
NmeAIII	GCCGAG	2 cut(s)	24, 484
NmuCI	GTSAC	1 cut(s)	154
NsiI	ATGCAT	2 cut(s)	6, 360
NspI	RCATGY	1 cut(s)	352
PdmI	GAANNNNTTC	2 cut(s)	509, 557
PfeI	GAWTC	1 cut(s)	398
PfoI	TCCNGGA	1 cut(s)	52
PkrI	GCNGC	9 cut(s)	180, 323, 455, 467, 501, 569, 578, 629, 653
PleI	GAGTC	1 cut(s)	20
PmaCI	CACGTG	1 cut(s)	691
PmlI	CACGTG	1 cut(s)	691
PpsI	GAGTC	1 cut(s)	20
Ppu21I	YACGTR	1 cut(s)	691
PpuMI	RGGWCCY	1 cut(s)	675
Psp5II	RGGWCCY	1 cut(s)	675
PspCI	CACGTG	1 cut(s)	691
PspFI	CCCAGC	1 cut(s)	105
PspN4I	GGNNCC	3 cut(s)	266, 393, 677
PspPI	GGNCC	6 cut(s)	47, 197, 293, 392, 675, 685
PspPPI	RGGWCCY	1 cut(s)	675
PstI	CTGCAG	2 cut(s)	470, 525
PsuI	RGATCY	2 cut(s)	264, 766
RsaI	GTAC	3 cut(s)	260, 383, 722
RsaNI	GTAC	3 cut(s)	259, 382, 721
RseI	CAYNNNNRTG	2 cut(s)	147, 353
SaqAI	TTAA	2 cut(s)	849, 856
SatI	GCNGC	9 cut(s)	179, 322, 454, 466, 500, 568, 577, 628, 652
Sau3AI	GATC	2 cut(s)	264, 766
Sau96I	GGNCC	6 cut(s)	47, 197, 293, 392, 675, 685
ScaI	AGTACT	1 cut(s)	260
SchI	GAGTC	1 cut(s)	20
ScrFI	CCNGG	1 cut(s)	54
SduI	GDGCHC	2 cut(s)	244, 372
SetI	ASST	9 cut(s)	202, 332, 494, 636, 677, 693, 735, 748, 820
SfaNI	GCATC	4 cut(s)	13, 345, 654, 832
SfcI	CTRYAG	2 cut(s)	466, 521
SinI	GGWCC	4 cut(s)	197, 392, 675, 685
SmiMI	CAYNNNNRTG	2 cut(s)	147, 353
SmlI	CTYRAG	1 cut(s)	680
SmoI	CTYRAG	1 cut(s)	680
Sse9I	AATT	1 cut(s)	127
SsiI	CCGC	8 cut(s)	70, 321, 500, 568, 576, 590, 627, 651
SspMI	CTAG	1 cut(s)	770
StyD4I	CCNGG	1 cut(s)	52
TaaI	ACNGT	2 cut(s)	160, 381
TaiI	ACGT	1 cut(s)	693
TasI	AATT	1 cut(s)	127
TatI	WGTACW	1 cut(s)	258
TauI	GCSGC	6 cut(s)	324, 502, 570, 579, 630, 654
TfiI	GAWTC	1 cut(s)	398
Tru1I	TTAA	2 cut(s)	849, 856
Tru9I	TTAA	2 cut(s)	849, 856
TseFI	GTSAC	1 cut(s)	154
TseI	GCWGC	3 cut(s)	178, 453, 465
Tsp45I	GTSAC	1 cut(s)	154
TspDTI	ATGAA	3 cut(s)	33, 414, 771
TspGWI	ACGGA	1 cut(s)	425
VpaK11BI	GGWCC	4 cut(s)	197, 392, 675, 685
XagI	CCTNNNNNAGG	1 cut(s)	249
XbaI	TCTAGA	1 cut(s)	769
XceI	RCATGY	1 cut(s)	352
XmnI	GAANNNNTTC	2 cut(s)	509, 557
XspI	CTAG	1 cut(s)	770
ZrmI	AGTACT	1 cut(s)	260
Zsp2I	ATGCAT	2 cut(s)	6, 360

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.