Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0014213

Physical Location & Seq

Genomic Coordinates Forward (+)

3170740 .. 3172073

Gene Structure 1334 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1045800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 882 bp

ATGCAAACTCCCTTCACTAGTACTACCATAGATGAAGATTTTCAGGATGAGGACTCCATTTTTCTCTCTCTTGGCCCTCCTGGACTGGATAATCATGTCCCCAAACAGTACCACCTCATCTACCACCACCAGTCTTCTTCCTCAACTCAGCCTGATCACCACCAAACTTTTTATCATGATTATCCAAACCCTAATCCTGATCCTGAGGACGGCACTGTCACTGTAGCTCTTAACATTGGGCCACCGAGTAGTGGAGGCGGTAGGCCAAGCTCATCGTTCATCAGCAACCCTAACCACAACCACATTGGCGGTCCTGTGGAAGGGCAGTACTGGATTCCCTCTCCTGCACAAATCCTCGTAGGCCCCACCCAGTTCTCTTGCCCTGTCTGCAGCAAAACATTCAACAGATACAACAACATGCAGATGCATATGTGGGGGCATGGATCAGAGTACAGGAAGGGACCAGAATCCTTGAGAGGGACAAAGCCAGCATCCTCAGTGCTGAGACTTCCATGCTATTGCTGCGCAGAGGGGTGCAAGAACAACATAGAACACCCAAGGTCAAGGCCACTTAAGGACTTCCGGACACTGCAGACACATTACAAGAGAAAGCATGGGACGAAGCCGTTTGGGTGCCGCAAGTGTGGGAAACCATTTGCAGTGAGAGGCGATTGGAGGACTCACGAGAAGAACTGCGGGAAGCTCTGGTTTTGCATTTGTGGGTCGGATTTCAAGCACAAGAGATCGCTCAAAGACCACGTTCGTGGGTTTGGTGATGGACATGCACCTTATGCTGTGGAGCTGTGTACTGAGCCTGAGGAAGAAGATCACATGGATGACGAGGATGACGATAACAATGACGATGATTTGGTTATTAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009058 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009812 GO:0009813 GO:0009888 GO:0009889 GO:0009965 GO:0010016 GO:0010051 GO:0010087 GO:0010154 GO:0010305 GO:0010468 GO:0010556 GO:0010588 GO:0019219 GO:0019222 GO:0022414 GO:0022622 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048316 GO:0048364 GO:0048366 GO:0048367 GO:0048598 GO:0048608 GO:0048731 GO:0048825 GO:0048826 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0071704 GO:0080090 GO:0090698 GO:0099402 GO:0140110 GO:1901576 GO:1903506 GO:1905392 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2 zf-met

Protein Analysis

294

Amino Acids

33.06

Weight (kDa)

6.15

Isoelectric Point (pI)

58.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C2H2_STOP2_3rd	PF23115	172 - 206	1.7e-19	STOP2-like, C2H2-type zinc finger
C2CH-3rd_BIRD-IDD	PF22995	209 - 233	3.3e-12	BIRD-IDD transcription factor, third C2HC zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014213)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13290
fragaria_vesca	FvH4_4g28010
malus_domestica	MD13G1045800.v1.1 MD16G1047400.v1.1
prunus_persica	Prupe.1G306200_v2.0.a1
pyrus_communis	pycom16g04140
rosa_chinensis	RchiOBHm_Chr4g0435741
rosa_laevigata	RLG00000006563
rosa_multiflora	Rmu_co8077120.1_g000001 Rmu_sc0000051.1_g000019
rosa_roxburghii	Rroxscaffold_5G00376930
rosa_rugosa	Rorug04G0289200
rosa_samantha	Rh4AG343500 Rh4BG352200 Rh4CG366700 Rh4DG346100
rosa_wichuraiana	Rw4G029990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	215
Acc16I	TGCGCA	1 cut(s)	526
AccB1I	GGYRCC	1 cut(s)	633
AccIII	TCCGGA	1 cut(s)	582
AciI	CCGC	4 cut(s)	258, 309, 637, 696
AclWI	GGATC	2 cut(s)	194, 451
AfaI	GTAC	5 cut(s)	22, 110, 329, 452, 808
AfiI	CCNNNNNNNGG	4 cut(s)	209, 251, 320, 477
AflII	CTTAAG	1 cut(s)	572
AgsI	TTSAA	2 cut(s)	403, 733
AhlI	ACTAGT	1 cut(s)	17
AjnI	CCWGG	1 cut(s)	79
AleI	CACNNNNGTG	1 cut(s)	762
AluBI	AGCT	4 cut(s)	227, 270, 703, 802
AluI	AGCT	4 cut(s)	227, 270, 703, 802
Alw26I	GTCTC	1 cut(s)	499
AlwI	GGATC	2 cut(s)	194, 451
Aor13HI	TCCGGA	1 cut(s)	582
AoxI	GGCC	5 cut(s)	73, 239, 263, 361, 566
ApeKI	GCWGC	2 cut(s)	390, 522
AseI	ATTAAT	1 cut(s)	876
Asp700I	GAANNNNTTC	1 cut(s)	39
AspLEI	GCGC	1 cut(s)	527
AspS9I	GGNCC	5 cut(s)	74, 239, 311, 362, 461
AsuHPI	GGTGA	2 cut(s)	149, 785
AvaII	GGWCC	2 cut(s)	311, 461
AxyI	CCTNAGG	2 cut(s)	204, 816
BanI	GGYRCC	1 cut(s)	633
BauI	CACGAG	1 cut(s)	683
BbsI	GAAGAC	1 cut(s)	126
BbvI	GCAGC	2 cut(s)	402, 509
BccI	CCATC	1 cut(s)	770
BceAI	ACGGC	2 cut(s)	226, 610
BciT130I	CCWGG	1 cut(s)	81
BclI	TGATCA	1 cut(s)	154
BcoDI	GTCTC	1 cut(s)	499
BcuI	ACTAGT	1 cut(s)	17
BfaI	CTAG	1 cut(s)	18
BfmI	CTRYAG	3 cut(s)	222, 388, 590
BfrI	CTTAAG	1 cut(s)	572
BisI	GCNGC	3 cut(s)	391, 523, 637
BlsI	GCNGC	3 cut(s)	392, 524, 638
BmcAI	AGTACT	2 cut(s)	22, 329
Bme1390I	CCNGG	1 cut(s)	81
Bme18I	GGWCC	2 cut(s)	311, 461
BmgT120I	GGNCC	5 cut(s)	74, 239, 311, 362, 461
BmiI	GGNNCC	3 cut(s)	364, 462, 635
BmrFI	CCNGG	1 cut(s)	81
BmrI	ACTGGG	1 cut(s)	364
BmsI	GCATC	2 cut(s)	414, 500
BmuI	ACTGGG	1 cut(s)	364
BpiI	GAAGAC	1 cut(s)	126
BpuEI	CTTGAG	1 cut(s)	493
BsaJI	CCNNGG	1 cut(s)	557
BsaWI	WCCGGW	1 cut(s)	582
Bsc4I	CCNNNNNNNGG	4 cut(s)	209, 251, 320, 477
Bse1I	ACTGG	4 cut(s)	90, 130, 335, 370
Bse21I	CCTNAGG	2 cut(s)	204, 816
BseAI	TCCGGA	1 cut(s)	582
BseBI	CCWGG	1 cut(s)	81
BseDI	CCNNGG	1 cut(s)	557
BseGI	GGATG	4 cut(s)	52, 491, 841, 850
BseLI	CCNNNNNNNGG	4 cut(s)	209, 251, 320, 477
BseMII	CTCAG	6 cut(s)	161, 195, 494, 510, 801, 807
BseNI	ACTGG	4 cut(s)	90, 130, 335, 370
BseXI	GCAGC	2 cut(s)	402, 509
BsgI	GTGCAG	1 cut(s)	330
BshFI	GGCC	5 cut(s)	75, 241, 265, 363, 568
BshNI	GGYRCC	1 cut(s)	633
BsiSI	CCGG	1 cut(s)	583
BslFI	GGGAC	4 cut(s)	83, 474, 493, 631
BslI	CCNNNNNNNGG	4 cut(s)	209, 251, 320, 477
BsmAI	GTCTC	1 cut(s)	499
BsmFI	GGGAC	4 cut(s)	83, 474, 493, 631
BsnI	GGCC	5 cut(s)	75, 241, 265, 363, 568
Bsp13I	TCCGGA	1 cut(s)	582
Bsp143I	GATC	5 cut(s)	154, 199, 443, 743, 826
BspACI	CCGC	4 cut(s)	258, 309, 637, 696
BspANI	GGCC	5 cut(s)	75, 241, 265, 363, 568
BspCNI	CTCAG	6 cut(s)	160, 196, 495, 509, 802, 808
BspEI	TCCGGA	1 cut(s)	582
BspHI	TCATGA	1 cut(s)	175
BspLI	GGNNCC	3 cut(s)	364, 462, 635
BspMAI	CTGCAG	2 cut(s)	392, 594
BspPI	GGATC	2 cut(s)	194, 451
BspT107I	GGYRCC	1 cut(s)	633
BspTI	CTTAAG	1 cut(s)	572
BsrI	ACTGG	4 cut(s)	90, 130, 335, 370
BssECI	CCNNGG	1 cut(s)	557
BssMI	GATC	5 cut(s)	154, 199, 443, 743, 826
BssSI	CACGAG	1 cut(s)	683
BssT1I	CCWWGG	1 cut(s)	557
Bst2BI	CACGAG	1 cut(s)	683
Bst2UI	CCWGG	1 cut(s)	81
Bst4CI	ACNGT	3 cut(s)	108, 217, 223
BstAFI	CTTAAG	1 cut(s)	572
BstAPI	GCANNNNNTGC	1 cut(s)	791
BstC8I	GCNNGC	1 cut(s)	489
BstDEI	CTNAG	6 cut(s)	147, 204, 496, 503, 810, 816
BstENI	CCTNNNNNAGG	1 cut(s)	318
BstF5I	GGATG	4 cut(s)	52, 491, 841, 850
BstHHI	GCGC	1 cut(s)	527
BstKTI	GATC	5 cut(s)	157, 202, 446, 746, 829
BstMAI	GTCTC	1 cut(s)	499
BstMBI	GATC	5 cut(s)	154, 199, 443, 743, 826
BstMWI	GCNNNNNNNGC	3 cut(s)	387, 522, 791
BstNI	CCWGG	1 cut(s)	81
BstNSI	RCATGY	2 cut(s)	421, 785
BstSCI	CCNGG	1 cut(s)	79
BstSFI	CTRYAG	3 cut(s)	222, 388, 590
BstV1I	GCAGC	2 cut(s)	402, 509
BstV2I	GAAGAC	1 cut(s)	126
BstXI	CCANNNNNNTGG	1 cut(s)	764
Bsu36I	CCTNAGG	2 cut(s)	204, 816
BsuRI	GGCC	5 cut(s)	75, 241, 265, 363, 568
BtsCI	GGATG	4 cut(s)	52, 491, 841, 850
BtsI	GCAGTG	2 cut(s)	587, 666
BtsIMutI	CAGTG	5 cut(s)	213, 219, 504, 587, 666
Cac8I	GCNNGC	1 cut(s)	489
CciI	TCATGA	1 cut(s)	175
CfoI	GCGC	1 cut(s)	527
Cfr13I	GGNCC	5 cut(s)	74, 239, 311, 362, 461
Csp6I	GTAC	5 cut(s)	21, 109, 328, 451, 807
CviAII	CATG	8 cut(s)	95, 176, 418, 440, 513, 614, 782, 832
CviQI	GTAC	5 cut(s)	21, 109, 328, 451, 807
DdeI	CTNAG	6 cut(s)	147, 204, 496, 503, 810, 816
DpnI	GATC	5 cut(s)	156, 201, 445, 745, 828
DpnII	GATC	5 cut(s)	154, 199, 443, 743, 826
DrdI	GACNNNNNNGTC	1 cut(s)	215
DseDI	GACNNNNNNGTC	1 cut(s)	215
Eco130I	CCWWGG	1 cut(s)	557
Eco47I	GGWCC	2 cut(s)	311, 461
Eco81I	CCTNAGG	2 cut(s)	204, 816
EcoNI	CCTNNNNNAGG	1 cut(s)	318
EcoO109I	RGGNCCY	1 cut(s)	362
EcoRII	CCWGG	1 cut(s)	79
EcoT14I	CCWWGG	1 cut(s)	557
EcoT22I	ATGCAT	1 cut(s)	429
ErhI	CCWWGG	1 cut(s)	557
FaeI	CATG	8 cut(s)	98, 179, 421, 443, 516, 617, 785, 835
FaqI	GGGAC	4 cut(s)	83, 474, 493, 631
FatI	CATG	8 cut(s)	94, 175, 417, 439, 512, 613, 781, 831
FauI	CCCGC	1 cut(s)	689
FauNDI	CATATG	1 cut(s)	429
FbaI	TGATCA	1 cut(s)	154
Fnu4HI	GCNGC	3 cut(s)	391, 523, 637
FokI	GGATG	4 cut(s)	59, 478, 848, 857
Fsp4HI	GCNGC	3 cut(s)	391, 523, 637
FspBI	CTAG	1 cut(s)	18
FspI	TGCGCA	1 cut(s)	526
GlaI	GCGC	1 cut(s)	526
GluI	GCNGC	3 cut(s)	391, 523, 637
HaeIII	GGCC	5 cut(s)	75, 241, 265, 363, 568
HapII	CCGG	1 cut(s)	583
HhaI	GCGC	1 cut(s)	527
Hin1II	CATG	8 cut(s)	98, 179, 421, 443, 516, 617, 785, 835
Hin6I	GCGC	1 cut(s)	525
HinP1I	GCGC	1 cut(s)	525
HinfI	GANTC	4 cut(s)	53, 334, 467, 679
HpaII	CCGG	1 cut(s)	583
HphI	GGTGA	2 cut(s)	149, 785
Hpy166II	GTNNAC	1 cut(s)	807
Hpy188I	TCNGA	2 cut(s)	448, 727
Hpy188III	TCNNGA	6 cut(s)	44, 176, 197, 203, 583, 683
Hpy8I	GTNNAC	1 cut(s)	807
HpyAV	CCTTC	3 cut(s)	22, 314, 451
HpyCH4III	ACNGT	3 cut(s)	108, 217, 223
HpyCH4IV	ACGT	1 cut(s)	759
HpyF10VI	GCNNNNNNNGC	3 cut(s)	387, 522, 791
HpyF3I	CTNAG	6 cut(s)	147, 204, 496, 503, 810, 816
HpySE526I	ACGT	1 cut(s)	759
Hsp92II	CATG	8 cut(s)	98, 179, 421, 443, 516, 617, 785, 835
HspAI	GCGC	1 cut(s)	525
Kpn2I	TCCGGA	1 cut(s)	582
Ksp22I	TGATCA	1 cut(s)	154
Kzo9I	GATC	5 cut(s)	154, 199, 443, 743, 826
LmnI	GCTCC	1 cut(s)	799
Lsp1109I	GCAGC	2 cut(s)	402, 509
LweI	GCATC	2 cut(s)	414, 500
MaeI	CTAG	1 cut(s)	18
MaeII	ACGT	1 cut(s)	759
MaeIII	GTNAC	1 cut(s)	217
MalI	GATC	5 cut(s)	156, 201, 445, 745, 828
MboI	GATC	5 cut(s)	154, 199, 443, 743, 826
MboII	GAAGA	6 cut(s)	47, 126, 129, 700, 833, 836
MluCI	AATT	1 cut(s)	877
MlyI	GAGTC	2 cut(s)	47, 673
MmeI	TCCRAC	1 cut(s)	705
Mph1103I	ATGCAT	1 cut(s)	429
MroI	TCCGGA	1 cut(s)	582
MroXI	GAANNNNTTC	1 cut(s)	39
MseI	TTAA	3 cut(s)	231, 573, 876
MslI	CAYNNNNRTG	3 cut(s)	422, 762, 834
MspCI	CTTAAG	1 cut(s)	572
MspI	CCGG	1 cut(s)	583
MspR9I	CCNGG	1 cut(s)	81
MvaI	CCWGG	1 cut(s)	81
MwoI	GCNNNNNNNGC	3 cut(s)	387, 522, 791
NdeI	CATATG	1 cut(s)	429
NdeII	GATC	5 cut(s)	154, 199, 443, 743, 826
NlaIII	CATG	8 cut(s)	98, 179, 421, 443, 516, 617, 785, 835
NlaIV	GGNNCC	3 cut(s)	364, 462, 635
NmuCI	GTSAC	1 cut(s)	217
NsbI	TGCGCA	1 cut(s)	526
NsiI	ATGCAT	1 cut(s)	429
NspI	RCATGY	2 cut(s)	421, 785
OliI	CACNNNNGTG	1 cut(s)	762
PagI	TCATGA	1 cut(s)	175
PcsI	WCGNNNNNNNCGW	1 cut(s)	846
PdmI	GAANNNNTTC	1 cut(s)	39
PfeI	GAWTC	2 cut(s)	334, 467
PfoI	TCCNGGA	1 cut(s)	79
PkrI	GCNGC	3 cut(s)	392, 524, 638
PleI	GAGTC	2 cut(s)	47, 673
PpsI	GAGTC	2 cut(s)	47, 673
PshBI	ATTAAT	1 cut(s)	876
Psp6I	CCWGG	1 cut(s)	79
PspGI	CCWGG	1 cut(s)	79
PspN4I	GGNNCC	3 cut(s)	364, 462, 635
PspPI	GGNCC	5 cut(s)	74, 239, 311, 362, 461
PstI	CTGCAG	2 cut(s)	392, 594
RsaI	GTAC	5 cut(s)	22, 110, 329, 452, 808
RsaNI	GTAC	5 cut(s)	21, 109, 328, 451, 807
RseI	CAYNNNNRTG	3 cut(s)	422, 762, 834
SaqAI	TTAA	3 cut(s)	231, 573, 876
SatI	GCNGC	3 cut(s)	391, 523, 637
Sau3AI	GATC	5 cut(s)	154, 199, 443, 743, 826
Sau96I	GGNCC	5 cut(s)	74, 239, 311, 362, 461
ScaI	AGTACT	2 cut(s)	22, 329
SchI	GAGTC	2 cut(s)	47, 673
ScrFI	CCNGG	1 cut(s)	81
SetI	ASST	8 cut(s)	117, 229, 272, 563, 705, 762, 790, 804
SfaNI	GCATC	2 cut(s)	414, 500
SfcI	CTRYAG	3 cut(s)	222, 388, 590
SinI	GGWCC	2 cut(s)	311, 461
SmiMI	CAYNNNNRTG	3 cut(s)	422, 762, 834
SmlI	CTYRAG	2 cut(s)	472, 572
SmoI	CTYRAG	2 cut(s)	472, 572
SpeI	ACTAGT	1 cut(s)	17
Sse9I	AATT	1 cut(s)	877
SsiI	CCGC	4 cut(s)	258, 309, 637, 696
SspMI	CTAG	1 cut(s)	18
StyD4I	CCNGG	1 cut(s)	79
StyI	CCWWGG	1 cut(s)	557
TaaI	ACNGT	3 cut(s)	108, 217, 223
TaiI	ACGT	1 cut(s)	762
TasI	AATT	1 cut(s)	877
TatI	WGTACW	4 cut(s)	20, 327, 450, 806
TauI	GCSGC	1 cut(s)	639
TfiI	GAWTC	2 cut(s)	334, 467
Tru1I	TTAA	3 cut(s)	231, 573, 876
Tru9I	TTAA	3 cut(s)	231, 573, 876
TscAI	CASTG	5 cut(s)	220, 226, 504, 594, 666
TseFI	GTSAC	1 cut(s)	217
TseI	GCWGC	2 cut(s)	390, 522
Tsp45I	GTSAC	1 cut(s)	217
TspDTI	ATGAA	2 cut(s)	48, 268
TspRI	CASTG	5 cut(s)	220, 226, 504, 594, 666
Vha464I	CTTAAG	1 cut(s)	572
VpaK11BI	GGWCC	2 cut(s)	311, 461
VspI	ATTAAT	1 cut(s)	876
XagI	CCTNNNNNAGG	1 cut(s)	318
XceI	RCATGY	2 cut(s)	421, 785
XcmI	CCANNNNNNNNNTGG	1 cut(s)	302
XmnI	GAANNNNTTC	1 cut(s)	39
XspI	CTAG	1 cut(s)	18
ZrmI	AGTACT	2 cut(s)	22, 329
Zsp2I	ATGCAT	1 cut(s)	429

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.