Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0014213

Physical Location & Seq

Genomic Coordinates Reverse (-)

29933396 .. 29935032

Gene Structure 1637 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G306200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 909 bp

ATGCAAACTCCCTCCACTACTACTTCTACCACTGATCTGGGTACCAGTGCTACTTCTTTTTTAGAAGCTGATGAAGATCAAGATGAAGAGTCCATTTTTCTTTCTCTTGGTCCTCCTGGACAGGGTGTCCCCAAACAGTACCACCTCATCTATCACCAGTCTTCTTCCTCAACCCAACCTCTTCCTCATAATCATCATCACCATCACCATCACCATCACCATCATCATCAAGATCAAAACCCTAATACTGATCATCTTGAGGATGGTGCTGTCACAGTAGCTCTTCATATTGGGCCACCAAGTAGTGGTAGTACAATTAGTTCATCAATTGGAAACCCTAACCACAACCACATTGGTGCTCCTATAGAAGGCCAGTACTGGATTCCCTCCCCTGCACAAATCCTTGTTGGCCCCACCCAGTTCTCCTGCCCTGTCTGCAGCAAAACATTCAACAGATACAACAACATGCAGATGCATATGTGGGGGCATGGATCACAATATAGGAAGGGGCCAGAATCCTTAAGAGGGACAAAGCCAGCTTCATCAGTGCTGAGACTTCCATGCTACTGCTGCGCAGAGGGGTGCAAGAACAACATAGAGCACCCAAGGTCAAGGCCACTCAAAGACTTCAGGACACTGCAGACACATTACAAAAGAAAACATGGGTCAAAGCCATTTGGGTGCCGCAAATGTGGGAAGCCATTTGCGGTGAGAGGAGATTGGAGGACTCACGAGAAGAACTGCGGGAAGCTCTGGTTTTGCATTTGTGGGTCTGATTTCAAGCACAAGAGGTCGCTCAAAGACCATGTTCGTGCATTTGGGGATGGCCACGCACCCTATGGTGTTGAGTTGTGTACTGAGCCTGAAGAAGAAGATCATCTGGATGATGAAGATGACGATGATGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009058 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009812 GO:0009813 GO:0009888 GO:0009889 GO:0009965 GO:0010016 GO:0010051 GO:0010087 GO:0010154 GO:0010305 GO:0010468 GO:0010556 GO:0010588 GO:0019219 GO:0019222 GO:0022414 GO:0022622 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048316 GO:0048364 GO:0048366 GO:0048367 GO:0048598 GO:0048608 GO:0048731 GO:0048825 GO:0048826 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0071704 GO:0080090 GO:0090698 GO:0099402 GO:0140110 GO:1901576 GO:1903506 GO:1905392 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2 zf-met

Protein Analysis

303

Amino Acids

33.88

Weight (kDa)

6.47

Isoelectric Point (pI)

54.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014213)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13290
fragaria_vesca	FvH4_4g28010
malus_domestica	MD13G1045800.v1.1 MD16G1047400.v1.1
prunus_persica	Prupe.1G306200_v2.0.a1
pyrus_communis	pycom16g04140
rosa_chinensis	RchiOBHm_Chr4g0435741
rosa_laevigata	RLG00000006563
rosa_multiflora	Rmu_co8077120.1_g000001 Rmu_sc0000051.1_g000019
rosa_roxburghii	Rroxscaffold_5G00376930
rosa_rugosa	Rorug04G0289200
rosa_samantha	Rh4AG343500 Rh4BG352200 Rh4CG366700 Rh4DG346100
rosa_wichuraiana	Rw4G029990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	574
Acc65I	GGTACC	1 cut(s)	41
AccB1I	GGYRCC	2 cut(s)	41, 681
AccB7I	CCANNNNNTGG	1 cut(s)	305
AciI	CCGC	3 cut(s)	685, 707, 744
AclWI	GGATC	1 cut(s)	499
AcoI	YGGCCR	1 cut(s)	826
AcuI	CTGAAG	2 cut(s)	613, 885
AfaI	GTAC	5 cut(s)	43, 140, 313, 377, 856
AfiI	CCNNNNNNNGG	4 cut(s)	122, 305, 368, 525
AflII	CTTAAG	1 cut(s)	520
AgsI	TTSAA	2 cut(s)	451, 781
AhdI	GACNNNNNGTC	1 cut(s)	125
AjnI	CCWGG	1 cut(s)	115
AleI	CACNNNNGTG	1 cut(s)	354
AluBI	AGCT	4 cut(s)	68, 281, 539, 751
AluI	AGCT	4 cut(s)	68, 281, 539, 751
Alw21I	GWGCWC	2 cut(s)	361, 603
Alw26I	GTCTC	1 cut(s)	547
AlwI	GGATC	1 cut(s)	499
AoxI	GGCC	6 cut(s)	293, 370, 409, 509, 614, 826
ApeKI	GCWGC	2 cut(s)	438, 570
Asp718I	GGTACC	1 cut(s)	41
AspLEI	GCGC	1 cut(s)	575
AspS9I	GGNCC	4 cut(s)	110, 293, 410, 509
AsuHPI	GGTGA	6 cut(s)	146, 191, 197, 203, 209, 721
AvaII	GGWCC	1 cut(s)	110
BalI	TGGCCA	1 cut(s)	828
BanI	GGYRCC	2 cut(s)	41, 681
BauI	CACGAG	1 cut(s)	731
BbsI	GAAGAC	1 cut(s)	153
Bbv12I	GWGCWC	2 cut(s)	361, 603
BbvI	GCAGC	2 cut(s)	450, 557
BccI	CCATC	6 cut(s)	210, 216, 222, 228, 257, 818
BciT130I	CCWGG	1 cut(s)	117
BclI	TGATCA	1 cut(s)	250
BcoDI	GTCTC	1 cut(s)	547
BfmI	CTRYAG	3 cut(s)	363, 436, 638
BfrI	CTTAAG	1 cut(s)	520
BisI	GCNGC	3 cut(s)	439, 571, 685
BlsI	GCNGC	3 cut(s)	440, 572, 686
BmcAI	AGTACT	1 cut(s)	377
Bme1390I	CCNGG	1 cut(s)	117
Bme18I	GGWCC	1 cut(s)	110
BmeRI	GACNNNNNGTC	1 cut(s)	125
BmgT120I	GGNCC	4 cut(s)	110, 293, 410, 509
BmiI	GGNNCC	4 cut(s)	43, 412, 510, 683
BmrFI	CCNGG	1 cut(s)	117
BmrI	ACTGGG	1 cut(s)	412
BmsI	GCATC	1 cut(s)	462
BmuI	ACTGGG	1 cut(s)	412
BpiI	GAAGAC	1 cut(s)	153
BpuEI	CTTGAG	1 cut(s)	278
BsaBI	GATNNNNATC	1 cut(s)	75
BsaJI	CCNNGG	1 cut(s)	605
Bsc4I	CCNNNNNNNGG	4 cut(s)	122, 305, 368, 525
Bse1I	ACTGG	5 cut(s)	45, 157, 373, 383, 418
Bse8I	GATNNNNATC	1 cut(s)	75
BseBI	CCWGG	1 cut(s)	117
BseDI	CCNNGG	1 cut(s)	605
BseGI	GGATG	3 cut(s)	268, 829, 889
BseJI	GATNNNNATC	1 cut(s)	75
BseLI	CCNNNNNNNGG	4 cut(s)	122, 305, 368, 525
BseMII	CTCAG	2 cut(s)	542, 849
BseNI	ACTGG	5 cut(s)	45, 157, 373, 383, 418
BseRI	GAGGAG	1 cut(s)	729
BseXI	GCAGC	2 cut(s)	450, 557
BsgI	GTGCAG	1 cut(s)	378
BshFI	GGCC	6 cut(s)	295, 372, 411, 511, 616, 828
BshNI	GGYRCC	2 cut(s)	41, 681
BsiHKAI	GWGCWC	2 cut(s)	361, 603
BslFI	GGGAC	2 cut(s)	113, 541
BslI	CCNNNNNNNGG	4 cut(s)	122, 305, 368, 525
BsmAI	GTCTC	1 cut(s)	547
BsmFI	GGGAC	2 cut(s)	113, 541
BsnI	GGCC	6 cut(s)	295, 372, 411, 511, 616, 828
Bsp1286I	GDGCHC	2 cut(s)	361, 603
Bsp143I	GATC	6 cut(s)	34, 76, 232, 250, 491, 874
BspACI	CCGC	3 cut(s)	685, 707, 744
BspANI	GGCC	6 cut(s)	295, 372, 411, 511, 616, 828
BspCNI	CTCAG	2 cut(s)	543, 850
BspLI	GGNNCC	4 cut(s)	43, 412, 510, 683
BspMAI	CTGCAG	2 cut(s)	440, 642
BspPI	GGATC	1 cut(s)	499
BspQI	GCTCTTC	1 cut(s)	288
BspT107I	GGYRCC	2 cut(s)	41, 681
BspTI	CTTAAG	1 cut(s)	520
BsrI	ACTGG	5 cut(s)	45, 157, 373, 383, 418
BssECI	CCNNGG	1 cut(s)	605
BssMI	GATC	6 cut(s)	34, 76, 232, 250, 491, 874
BssSI	CACGAG	1 cut(s)	731
BssT1I	CCWWGG	1 cut(s)	605
Bst2BI	CACGAG	1 cut(s)	731
Bst2UI	CCWGG	1 cut(s)	117
Bst4CI	ACNGT	2 cut(s)	138, 277
Bst6I	CTCTTC	3 cut(s)	81, 186, 288
BstAFI	CTTAAG	1 cut(s)	520
BstC8I	GCNNGC	1 cut(s)	537
BstDEI	CTNAG	2 cut(s)	551, 858
BstENI	CCTNNNNNAGG	1 cut(s)	366
BstF5I	GGATG	3 cut(s)	268, 829, 889
BstHHI	GCGC	1 cut(s)	575
BstKTI	GATC	6 cut(s)	37, 79, 235, 253, 494, 877
BstMAI	GTCTC	1 cut(s)	547
BstMBI	GATC	6 cut(s)	34, 76, 232, 250, 491, 874
BstMWI	GCNNNNNNNGC	2 cut(s)	435, 570
BstNI	CCWGG	1 cut(s)	117
BstNSI	RCATGY	1 cut(s)	469
BstSCI	CCNGG	1 cut(s)	115
BstSFI	CTRYAG	3 cut(s)	363, 436, 638
BstV1I	GCAGC	2 cut(s)	450, 557
BstV2I	GAAGAC	1 cut(s)	153
BstXI	CCANNNNNNTGG	1 cut(s)	37
BsuRI	GGCC	6 cut(s)	295, 372, 411, 511, 616, 828
BtsCI	GGATG	3 cut(s)	268, 829, 889
BtsI	GCAGTG	1 cut(s)	635
BtsIMutI	CAGTG	4 cut(s)	30, 52, 552, 635
Cac8I	GCNNGC	1 cut(s)	537
CfoI	GCGC	1 cut(s)	575
Cfr13I	GGNCC	4 cut(s)	110, 293, 410, 509
Csp6I	GTAC	5 cut(s)	42, 139, 312, 376, 855
CviAII	CATG	5 cut(s)	466, 488, 561, 662, 806
CviQI	GTAC	5 cut(s)	42, 139, 312, 376, 855
DdeI	CTNAG	2 cut(s)	551, 858
DpnI	GATC	6 cut(s)	36, 78, 234, 252, 493, 876
DpnII	GATC	6 cut(s)	34, 76, 232, 250, 491, 874
DriI	GACNNNNNGTC	1 cut(s)	125
EaeI	YGGCCR	1 cut(s)	826
Eam1104I	CTCTTC	3 cut(s)	81, 186, 288
Eam1105I	GACNNNNNGTC	1 cut(s)	125
EarI	CTCTTC	3 cut(s)	81, 186, 288
Eco130I	CCWWGG	1 cut(s)	605
Eco47I	GGWCC	1 cut(s)	110
Eco57I	CTGAAG	2 cut(s)	613, 885
EcoNI	CCTNNNNNAGG	1 cut(s)	366
EcoRII	CCWGG	1 cut(s)	115
EcoT14I	CCWWGG	1 cut(s)	605
EcoT22I	ATGCAT	1 cut(s)	477
ErhI	CCWWGG	1 cut(s)	605
FaeI	CATG	5 cut(s)	469, 491, 564, 665, 809
FaqI	GGGAC	2 cut(s)	113, 541
FatI	CATG	5 cut(s)	465, 487, 560, 661, 805
FauI	CCCGC	1 cut(s)	737
FauNDI	CATATG	1 cut(s)	477
FbaI	TGATCA	1 cut(s)	250
Fnu4HI	GCNGC	3 cut(s)	439, 571, 685
FokI	GGATG	3 cut(s)	275, 836, 896
Fsp4HI	GCNGC	3 cut(s)	439, 571, 685
FspI	TGCGCA	1 cut(s)	574
GlaI	GCGC	1 cut(s)	574
GluI	GCNGC	3 cut(s)	439, 571, 685
HaeIII	GGCC	6 cut(s)	295, 372, 411, 511, 616, 828
HhaI	GCGC	1 cut(s)	575
Hin1II	CATG	5 cut(s)	469, 491, 564, 665, 809
Hin6I	GCGC	1 cut(s)	573
HinP1I	GCGC	1 cut(s)	573
HinfI	GANTC	4 cut(s)	89, 382, 515, 727
HphI	GGTGA	6 cut(s)	146, 191, 197, 203, 209, 721
Hpy166II	GTNNAC	1 cut(s)	855
Hpy188I	TCNGA	1 cut(s)	775
Hpy188III	TCNNGA	6 cut(s)	80, 230, 257, 631, 731, 881
Hpy8I	GTNNAC	1 cut(s)	855
HpyAV	CCTTC	2 cut(s)	362, 499
HpyCH4III	ACNGT	2 cut(s)	138, 277
HpyCH4V	TGCA	9 cut(s)	4, 395, 438, 469, 475, 585, 640, 762, 815
HpyF10VI	GCNNNNNNNGC	2 cut(s)	435, 570
HpyF3I	CTNAG	2 cut(s)	551, 858
Hsp92II	CATG	5 cut(s)	469, 491, 564, 665, 809
HspAI	GCGC	1 cut(s)	573
KpnI	GGTACC	1 cut(s)	45
Ksp22I	TGATCA	1 cut(s)	250
Kzo9I	GATC	6 cut(s)	34, 76, 232, 250, 491, 874
LguI	GCTCTTC	1 cut(s)	288
LmnI	GCTCC	1 cut(s)	364
Lsp1109I	GCAGC	2 cut(s)	450, 557
LweI	GCATC	1 cut(s)	462
MaeIII	GTNAC	1 cut(s)	271
MalI	GATC	6 cut(s)	36, 78, 234, 252, 493, 876
MboI	GATC	6 cut(s)	34, 76, 232, 250, 491, 874
MfeI	CAATTG	1 cut(s)	327
MhlI	GDGCHC	2 cut(s)	361, 603
MlsI	TGGCCA	1 cut(s)	828
MluCI	AATT	2 cut(s)	315, 327
MluNI	TGGCCA	1 cut(s)	828
MlyI	GAGTC	2 cut(s)	98, 721
Mox20I	TGGCCA	1 cut(s)	828
Mph1103I	ATGCAT	1 cut(s)	477
MscI	TGGCCA	1 cut(s)	828
MseI	TTAA	2 cut(s)	521, 907
MslI	CAYNNNNRTG	5 cut(s)	354, 470, 679, 810, 882
Msp20I	TGGCCA	1 cut(s)	828
MspCI	CTTAAG	1 cut(s)	520
MspR9I	CCNGG	1 cut(s)	117
MunI	CAATTG	1 cut(s)	327
MvaI	CCWGG	1 cut(s)	117
MwoI	GCNNNNNNNGC	2 cut(s)	435, 570
NdeI	CATATG	1 cut(s)	477
NdeII	GATC	6 cut(s)	34, 76, 232, 250, 491, 874
NlaIII	CATG	5 cut(s)	469, 491, 564, 665, 809
NlaIV	GGNNCC	4 cut(s)	43, 412, 510, 683
NmuCI	GTSAC	1 cut(s)	271
NsbI	TGCGCA	1 cut(s)	574
NsiI	ATGCAT	1 cut(s)	477
NspI	RCATGY	1 cut(s)	469
OliI	CACNNNNGTG	1 cut(s)	354
PciSI	GCTCTTC	1 cut(s)	288
PfeI	GAWTC	2 cut(s)	382, 515
PflMI	CCANNNNNTGG	1 cut(s)	305
PfoI	TCCNGGA	1 cut(s)	115
PkrI	GCNGC	3 cut(s)	440, 572, 686
PleI	GAGTC	2 cut(s)	97, 721
PpsI	GAGTC	2 cut(s)	97, 721
Psp6I	CCWGG	1 cut(s)	115
PspGI	CCWGG	1 cut(s)	115
PspN4I	GGNNCC	4 cut(s)	43, 412, 510, 683
PspPI	GGNCC	4 cut(s)	110, 293, 410, 509
PsrI	GAACNNNNNNTAC	2 cut(s)	304, 336
PstI	CTGCAG	2 cut(s)	440, 642
RsaI	GTAC	5 cut(s)	43, 140, 313, 377, 856
RsaNI	GTAC	5 cut(s)	42, 139, 312, 376, 855
RseI	CAYNNNNRTG	5 cut(s)	354, 470, 679, 810, 882
SapI	GCTCTTC	1 cut(s)	288
SaqAI	TTAA	2 cut(s)	521, 907
SatI	GCNGC	3 cut(s)	439, 571, 685
Sau3AI	GATC	6 cut(s)	34, 76, 232, 250, 491, 874
Sau96I	GGNCC	4 cut(s)	110, 293, 410, 509
ScaI	AGTACT	1 cut(s)	377
SchI	GAGTC	2 cut(s)	98, 721
ScrFI	CCNGG	1 cut(s)	117
SduI	GDGCHC	2 cut(s)	361, 603
SetI	ASST	8 cut(s)	70, 147, 181, 283, 541, 611, 753, 794
SfaNI	GCATC	1 cut(s)	462
SfcI	CTRYAG	3 cut(s)	363, 436, 638
SinI	GGWCC	1 cut(s)	110
SmiMI	CAYNNNNRTG	5 cut(s)	354, 470, 679, 810, 882
SmlI	CTYRAG	2 cut(s)	257, 520
SmoI	CTYRAG	2 cut(s)	257, 520
Sse9I	AATT	2 cut(s)	315, 327
SsiI	CCGC	3 cut(s)	685, 707, 744
StyD4I	CCNGG	1 cut(s)	115
StyI	CCWWGG	1 cut(s)	605
TaaI	ACNGT	2 cut(s)	138, 277
TasI	AATT	2 cut(s)	315, 327
TatI	WGTACW	3 cut(s)	311, 375, 854
TauI	GCSGC	1 cut(s)	687
TfiI	GAWTC	2 cut(s)	382, 515
Tru1I	TTAA	2 cut(s)	521, 907
Tru9I	TTAA	2 cut(s)	521, 907
TscAI	CASTG	4 cut(s)	37, 52, 552, 642
TseFI	GTSAC	1 cut(s)	271
TseI	GCWGC	2 cut(s)	438, 570
Tsp45I	GTSAC	1 cut(s)	271
TspDTI	ATGAA	6 cut(s)	87, 99, 275, 312, 531, 903
TspRI	CASTG	4 cut(s)	37, 52, 552, 642
Van91I	CCANNNNNTGG	1 cut(s)	305
Vha464I	CTTAAG	1 cut(s)	520
VpaK11BI	GGWCC	1 cut(s)	110
XagI	CCTNNNNNAGG	1 cut(s)	366
XceI	RCATGY	1 cut(s)	469
XcmI	CCANNNNNNNNNTGG	2 cut(s)	350, 836
ZrmI	AGTACT	1 cut(s)	377
Zsp2I	ATGCAT	1 cut(s)	477

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.