Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0014213

Physical Location & Seq

Genomic Coordinates Forward (+)

3303420 .. 3305028

Gene Structure 1609 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1047400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 876 bp

ATGCAAACTCCCTTCACTACTACTACAATAGACGAAGATTTTCAGGATGAGGACTCCATTTTTCTTTCTCTTGGTCCTCCTGGACAGGATGTCCCCAAACAGTACCACCTCATCTACCACAACCAATCTTCTTCCTCAACTCAACCTGATCACCATCGAACTTTTTATCATGATTATTCAAACCCTAATCCTGATCCCGAGGACGGCACTATCACAGTGGCTCTTAACATTGAGCCACCGAGTGGTGGAGGCGGTAGACCGAGCTCATCATCCATCAGCAAACCTAACCACAACCACATTGGCGGTCCTGTGGAAGGCCAGTACTGGATTCCCTCCCCTGCACAAATCCTCGTAGGCCCCACCCAGTTCTCTTGCCCTGTCTGCAGCAAAACATTCAACAGATACAACAACATGCAGATGCATATGTGGGGTCATGGATCACAATACAGGAAGGGACCTGAGTCTTTGAGAGGGACAAAACCAGCATCATCAGTGCTGAGACTTCCATGCTATTGCTGCGCAGAGGGGTGCAAGAACAACATAGAACACCCGAGGTCAAGGCCGCTCAAGGACTTCAGGACACTGCAGACACATTACAAGAGAAAGCACGGGACAAAGCCGTTCGGGTGCCGCAAGTGCGGGAAGCCGTTTGCAGTGAGAGGCGATTGGAGGACTCACGAGAAGAACTGCGGGAAGCTCTGGTTTTGCATTTGTGGGTCGGATTTCAAGCACAAGAGATCGCTCAAAGACCACGTTCGTGCGTTTGGTGATGGACATGCACCTTATGGTGTGGAGCTGTGTACTGAGCCTGAAGAAGAAGATCACGTGGATGACGAGGAGGACGATAACAATGACGATGATTTGGTTATTAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009058 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009812 GO:0009813 GO:0009888 GO:0009889 GO:0009965 GO:0010016 GO:0010051 GO:0010087 GO:0010154 GO:0010305 GO:0010468 GO:0010556 GO:0010588 GO:0019219 GO:0019222 GO:0022414 GO:0022622 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048316 GO:0048364 GO:0048366 GO:0048367 GO:0048598 GO:0048608 GO:0048731 GO:0048825 GO:0048826 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0071704 GO:0080090 GO:0090698 GO:0099402 GO:0140110 GO:1901576 GO:1903506 GO:1905392 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2 zf-met

Protein Analysis

292

Amino Acids

32.83

Weight (kDa)

6.27

Isoelectric Point (pI)

62.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C2H2_STOP2_3rd	PF23115	170 - 204	1.7e-19	STOP2-like, C2H2-type zinc finger
C2CH-3rd_BIRD-IDD	PF22995	207 - 231	3.2e-12	BIRD-IDD transcription factor, third C2HC zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014213)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13290
fragaria_vesca	FvH4_4g28010
malus_domestica	MD13G1045800.v1.1 MD16G1047400.v1.1
prunus_persica	Prupe.1G306200_v2.0.a1
pyrus_communis	pycom16g04140
rosa_chinensis	RchiOBHm_Chr4g0435741
rosa_laevigata	RLG00000006563
rosa_multiflora	Rmu_co8077120.1_g000001 Rmu_sc0000051.1_g000019
rosa_roxburghii	Rroxscaffold_5G00376930
rosa_rugosa	Rorug04G0289200
rosa_samantha	Rh4AG343500 Rh4BG352200 Rh4CG366700 Rh4DG346100
rosa_wichuraiana	Rw4G029990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	520
AccB1I	GGYRCC	1 cut(s)	627
AccB7I	CCANNNNNTGG	1 cut(s)	242
AccBSI	CCGCTC	1 cut(s)	565
AccI	GTMKAC	1 cut(s)	256
AciI	CCGC	6 cut(s)	252, 303, 563, 631, 639, 690
AclWI	GGATC	2 cut(s)	188, 445
AcuI	CTGAAG	2 cut(s)	559, 831
AcvI	CACGTG	1 cut(s)	826
AdeI	CACNNNGTG	1 cut(s)	242
AfaI	GTAC	3 cut(s)	104, 323, 802
AfiI	CCNNNNNNNGG	4 cut(s)	203, 242, 245, 314
AgsI	TTSAA	3 cut(s)	180, 397, 727
AhdI	GACNNNNNGTC	1 cut(s)	89
AjnI	CCWGG	1 cut(s)	79
AleI	CACNNNNGTG	1 cut(s)	756
AluBI	AGCT	3 cut(s)	264, 697, 796
AluI	AGCT	3 cut(s)	264, 697, 796
Alw21I	GWGCWC	1 cut(s)	266
Alw26I	GTCTC	1 cut(s)	493
AlwI	GGATC	2 cut(s)	188, 445
Ama87I	CYCGRG	2 cut(s)	197, 550
AoxI	GGCC	3 cut(s)	316, 355, 560
ApeKI	GCWGC	2 cut(s)	384, 516
AseI	ATTAAT	1 cut(s)	870
Asp700I	GAANNNNTTC	1 cut(s)	39
AspLEI	GCGC	1 cut(s)	521
AspS9I	GGNCC	4 cut(s)	74, 305, 356, 455
AsuHPI	GGTGA	2 cut(s)	143, 779
AvaI	CYCGRG	2 cut(s)	197, 550
AvaII	GGWCC	3 cut(s)	74, 305, 455
BanI	GGYRCC	1 cut(s)	627
BanII	GRGCYC	1 cut(s)	266
BauI	CACGAG	1 cut(s)	677
BbrPI	CACGTG	1 cut(s)	826
Bbv12I	GWGCWC	1 cut(s)	266
BbvI	GCAGC	2 cut(s)	396, 503
BccI	CCATC	3 cut(s)	162, 281, 764
BceAI	ACGGC	3 cut(s)	220, 604, 631
BciT130I	CCWGG	1 cut(s)	81
BclI	TGATCA	1 cut(s)	148
BcoDI	GTCTC	1 cut(s)	493
BfmI	CTRYAG	2 cut(s)	382, 584
BisI	GCNGC	4 cut(s)	385, 517, 563, 631
BlsI	GCNGC	4 cut(s)	386, 518, 564, 632
BmcAI	AGTACT	1 cut(s)	323
Bme1390I	CCNGG	1 cut(s)	81
Bme18I	GGWCC	3 cut(s)	74, 305, 455
BmeRI	GACNNNNNGTC	1 cut(s)	89
BmeT110I	CYCGRG	2 cut(s)	197, 550
BmgT120I	GGNCC	4 cut(s)	74, 305, 356, 455
BmiI	GGNNCC	3 cut(s)	358, 456, 629
BmrFI	CCNGG	1 cut(s)	81
BmrI	ACTGGG	1 cut(s)	358
BmsI	GCATC	2 cut(s)	408, 494
BmuI	ACTGGG	1 cut(s)	358
BoxI	GACNNNNGTC	1 cut(s)	460
BpuEI	CTTGAG	1 cut(s)	551
BsaAI	YACGTR	1 cut(s)	826
BsaBI	GATNNNNATC	1 cut(s)	153
BsaJI	CCNNGG	2 cut(s)	198, 551
Bsc4I	CCNNNNNNNGG	4 cut(s)	203, 242, 245, 314
Bse1I	ACTGG	3 cut(s)	319, 329, 364
Bse8I	GATNNNNATC	1 cut(s)	153
BseBI	CCWGG	1 cut(s)	81
BseDI	CCNNGG	2 cut(s)	198, 551
BseGI	GGATG	4 cut(s)	52, 94, 269, 835
BseJI	GATNNNNATC	1 cut(s)	153
BseLI	CCNNNNNNNGG	4 cut(s)	203, 242, 245, 314
BseMII	CTCAG	3 cut(s)	450, 488, 795
BseNI	ACTGG	3 cut(s)	319, 329, 364
BseRI	GAGGAG	1 cut(s)	851
BseXI	GCAGC	2 cut(s)	396, 503
BsgI	GTGCAG	1 cut(s)	324
BshFI	GGCC	3 cut(s)	318, 357, 562
BshNI	GGYRCC	1 cut(s)	627
BsiHKAI	GWGCWC	1 cut(s)	266
BsiHKCI	CYCGRG	2 cut(s)	197, 550
BslFI	GGGAC	4 cut(s)	77, 468, 487, 625
BslI	CCNNNNNNNGG	4 cut(s)	203, 242, 245, 314
BsmAI	GTCTC	1 cut(s)	493
BsmFI	GGGAC	4 cut(s)	77, 468, 487, 625
BsnI	GGCC	3 cut(s)	318, 357, 562
BsoBI	CYCGRG	2 cut(s)	197, 550
Bsp1286I	GDGCHC	1 cut(s)	266
Bsp143I	GATC	5 cut(s)	148, 193, 437, 737, 820
BspACI	CCGC	6 cut(s)	252, 303, 563, 631, 639, 690
BspANI	GGCC	3 cut(s)	318, 357, 562
BspCNI	CTCAG	3 cut(s)	451, 489, 796
BspHI	TCATGA	1 cut(s)	169
BspLI	GGNNCC	3 cut(s)	358, 456, 629
BspMAI	CTGCAG	2 cut(s)	386, 588
BspPI	GGATC	2 cut(s)	188, 445
BspT107I	GGYRCC	1 cut(s)	627
BsrBI	CCGCTC	1 cut(s)	565
BsrI	ACTGG	3 cut(s)	319, 329, 364
BssECI	CCNNGG	2 cut(s)	198, 551
BssMI	GATC	5 cut(s)	148, 193, 437, 737, 820
BssSI	CACGAG	1 cut(s)	677
Bst2BI	CACGAG	1 cut(s)	677
Bst2UI	CCWGG	1 cut(s)	81
Bst4CI	ACNGT	2 cut(s)	102, 217
BstBAI	YACGTR	1 cut(s)	826
BstDEI	CTNAG	3 cut(s)	459, 497, 804
BstENI	CCTNNNNNAGG	1 cut(s)	312
BstF5I	GGATG	4 cut(s)	52, 94, 269, 835
BstHHI	GCGC	1 cut(s)	521
BstKTI	GATC	5 cut(s)	151, 196, 440, 740, 823
BstMAI	GTCTC	1 cut(s)	493
BstMBI	GATC	5 cut(s)	148, 193, 437, 737, 820
BstMWI	GCNNNNNNNGC	3 cut(s)	381, 516, 636
BstNI	CCWGG	1 cut(s)	81
BstNSI	RCATGY	2 cut(s)	415, 779
BstPAI	GACNNNNGTC	1 cut(s)	460
BstSCI	CCNGG	1 cut(s)	79
BstSFI	CTRYAG	2 cut(s)	382, 584
BstV1I	GCAGC	2 cut(s)	396, 503
BsuRI	GGCC	3 cut(s)	318, 357, 562
BtsCI	GGATG	4 cut(s)	52, 94, 269, 835
BtsI	GCAGTG	2 cut(s)	581, 660
BtsIMutI	CAGTG	4 cut(s)	222, 498, 581, 660
CciI	TCATGA	1 cut(s)	169
CfoI	GCGC	1 cut(s)	521
Cfr13I	GGNCC	4 cut(s)	74, 305, 356, 455
Csp6I	GTAC	3 cut(s)	103, 322, 801
CviAII	CATG	5 cut(s)	170, 412, 434, 507, 776
CviQI	GTAC	3 cut(s)	103, 322, 801
DdeI	CTNAG	3 cut(s)	459, 497, 804
DpnI	GATC	5 cut(s)	150, 195, 439, 739, 822
DpnII	GATC	5 cut(s)	148, 193, 437, 737, 820
DraIII	CACNNNGTG	1 cut(s)	242
DriI	GACNNNNNGTC	1 cut(s)	89
Eam1105I	GACNNNNNGTC	1 cut(s)	89
Ecl136II	GAGCTC	1 cut(s)	264
Eco24I	GRGCYC	1 cut(s)	266
Eco47I	GGWCC	3 cut(s)	74, 305, 455
Eco53kI	GAGCTC	1 cut(s)	264
Eco57I	CTGAAG	2 cut(s)	559, 831
Eco72I	CACGTG	1 cut(s)	826
Eco88I	CYCGRG	2 cut(s)	197, 550
EcoICRI	GAGCTC	1 cut(s)	264
EcoNI	CCTNNNNNAGG	1 cut(s)	312
EcoO109I	RGGNCCY	2 cut(s)	356, 455
EcoRII	CCWGG	1 cut(s)	79
EcoT22I	ATGCAT	1 cut(s)	423
EcoT38I	GRGCYC	1 cut(s)	266
FaeI	CATG	5 cut(s)	173, 415, 437, 510, 779
FaiI	YATR	9 cut(s)	171, 413, 423, 425, 435, 508, 542, 777, 786
FaqI	GGGAC	4 cut(s)	77, 468, 487, 625
FatI	CATG	5 cut(s)	169, 411, 433, 506, 775
FauI	CCCGC	2 cut(s)	632, 683
FauNDI	CATATG	1 cut(s)	423
FbaI	TGATCA	1 cut(s)	148
FblI	GTMKAC	1 cut(s)	256
Fnu4HI	GCNGC	4 cut(s)	385, 517, 563, 631
FokI	GGATG	4 cut(s)	59, 101, 256, 842
FriOI	GRGCYC	1 cut(s)	266
Fsp4HI	GCNGC	4 cut(s)	385, 517, 563, 631
FspI	TGCGCA	1 cut(s)	520
GlaI	GCGC	1 cut(s)	520
GluI	GCNGC	4 cut(s)	385, 517, 563, 631
HaeIII	GGCC	3 cut(s)	318, 357, 562
HhaI	GCGC	1 cut(s)	521
Hin1II	CATG	5 cut(s)	173, 415, 437, 510, 779
Hin6I	GCGC	1 cut(s)	519
HinP1I	GCGC	1 cut(s)	519
HinfI	GANTC	4 cut(s)	53, 328, 461, 673
HphI	GGTGA	2 cut(s)	143, 779
Hpy166II	GTNNAC	2 cut(s)	257, 801
Hpy188I	TCNGA	1 cut(s)	721
Hpy188III	TCNNGA	6 cut(s)	44, 170, 191, 197, 577, 677
Hpy8I	GTNNAC	2 cut(s)	257, 801
HpyAV	CCTTC	3 cut(s)	22, 308, 445
HpyCH4III	ACNGT	2 cut(s)	102, 217
HpyCH4IV	ACGT	2 cut(s)	753, 825
HpyF10VI	GCNNNNNNNGC	3 cut(s)	381, 516, 636
HpyF3I	CTNAG	3 cut(s)	459, 497, 804
HpySE526I	ACGT	2 cut(s)	753, 825
Hsp92II	CATG	5 cut(s)	173, 415, 437, 510, 779
HspAI	GCGC	1 cut(s)	519
Ksp22I	TGATCA	1 cut(s)	148
Kzo9I	GATC	5 cut(s)	148, 193, 437, 737, 820
LmnI	GCTCC	1 cut(s)	793
Lsp1109I	GCAGC	2 cut(s)	396, 503
LweI	GCATC	2 cut(s)	408, 494
MaeII	ACGT	2 cut(s)	753, 825
MalI	GATC	5 cut(s)	150, 195, 439, 739, 822
MbiI	CCGCTC	1 cut(s)	565
MboI	GATC	5 cut(s)	148, 193, 437, 737, 820
MboII	GAAGA	7 cut(s)	47, 120, 123, 694, 824, 827, 830
MhlI	GDGCHC	1 cut(s)	266
MluCI	AATT	1 cut(s)	871
MlyI	GAGTC	3 cut(s)	47, 470, 667
MmeI	TCCRAC	1 cut(s)	699
Mph1103I	ATGCAT	1 cut(s)	423
MroXI	GAANNNNTTC	1 cut(s)	39
MseI	TTAA	2 cut(s)	225, 870
MslI	CAYNNNNRTG	3 cut(s)	416, 756, 828
MspR9I	CCNGG	1 cut(s)	81
MvaI	CCWGG	1 cut(s)	81
MwoI	GCNNNNNNNGC	3 cut(s)	381, 516, 636
NdeI	CATATG	1 cut(s)	423
NdeII	GATC	5 cut(s)	148, 193, 437, 737, 820
NlaIII	CATG	5 cut(s)	173, 415, 437, 510, 779
NlaIV	GGNNCC	3 cut(s)	358, 456, 629
NsbI	TGCGCA	1 cut(s)	520
NsiI	ATGCAT	1 cut(s)	423
NspI	RCATGY	2 cut(s)	415, 779
OliI	CACNNNNGTG	1 cut(s)	756
PagI	TCATGA	1 cut(s)	169
PcsI	WCGNNNNNNNCGW	2 cut(s)	831, 840
PdmI	GAANNNNTTC	1 cut(s)	39
PfeI	GAWTC	1 cut(s)	328
PflMI	CCANNNNNTGG	1 cut(s)	242
PfoI	TCCNGGA	1 cut(s)	79
PkrI	GCNGC	4 cut(s)	386, 518, 564, 632
PleI	GAGTC	3 cut(s)	47, 469, 667
PmaCI	CACGTG	1 cut(s)	826
PmlI	CACGTG	1 cut(s)	826
PpsI	GAGTC	3 cut(s)	47, 469, 667
Ppu21I	YACGTR	1 cut(s)	826
PpuMI	RGGWCCY	1 cut(s)	455
PshAI	GACNNNNGTC	1 cut(s)	460
PshBI	ATTAAT	1 cut(s)	870
Psp124BI	GAGCTC	1 cut(s)	266
Psp5II	RGGWCCY	1 cut(s)	455
Psp6I	CCWGG	1 cut(s)	79
PspCI	CACGTG	1 cut(s)	826
PspGI	CCWGG	1 cut(s)	79
PspN4I	GGNNCC	3 cut(s)	358, 456, 629
PspPI	GGNCC	4 cut(s)	74, 305, 356, 455
PspPPI	RGGWCCY	1 cut(s)	455
PstI	CTGCAG	2 cut(s)	386, 588
RsaI	GTAC	3 cut(s)	104, 323, 802
RsaNI	GTAC	3 cut(s)	103, 322, 801
RseI	CAYNNNNRTG	3 cut(s)	416, 756, 828
SacI	GAGCTC	1 cut(s)	266
SaqAI	TTAA	2 cut(s)	225, 870
SatI	GCNGC	4 cut(s)	385, 517, 563, 631
Sau3AI	GATC	5 cut(s)	148, 193, 437, 737, 820
Sau96I	GGNCC	4 cut(s)	74, 305, 356, 455
ScaI	AGTACT	1 cut(s)	323
SchI	GAGTC	3 cut(s)	47, 470, 667
ScrFI	CCNGG	1 cut(s)	81
SduI	GDGCHC	1 cut(s)	266
SfaNI	GCATC	2 cut(s)	408, 494
SfcI	CTRYAG	2 cut(s)	382, 584
SinI	GGWCC	3 cut(s)	74, 305, 455
SmiMI	CAYNNNNRTG	3 cut(s)	416, 756, 828
SmlI	CTYRAG	1 cut(s)	566
SmoI	CTYRAG	1 cut(s)	566
Sse9I	AATT	1 cut(s)	871
SsiI	CCGC	6 cut(s)	252, 303, 563, 631, 639, 690
SstI	GAGCTC	1 cut(s)	266
StyD4I	CCNGG	1 cut(s)	79
TaaI	ACNGT	2 cut(s)	102, 217
TaiI	ACGT	2 cut(s)	756, 828
TaqI	TCGA	1 cut(s)	157
TaqII	GACCGA	1 cut(s)	274
TasI	AATT	1 cut(s)	871
TatI	WGTACW	2 cut(s)	321, 800
TauI	GCSGC	2 cut(s)	565, 633
TfiI	GAWTC	1 cut(s)	328
Tru1I	TTAA	2 cut(s)	225, 870
Tru9I	TTAA	2 cut(s)	225, 870
TscAI	CASTG	4 cut(s)	222, 498, 588, 660
TseI	GCWGC	2 cut(s)	384, 516
TspRI	CASTG	4 cut(s)	222, 498, 588, 660
Van91I	CCANNNNNTGG	1 cut(s)	242
VpaK11BI	GGWCC	3 cut(s)	74, 305, 455
VspI	ATTAAT	1 cut(s)	870
XagI	CCTNNNNNAGG	1 cut(s)	312
XceI	RCATGY	2 cut(s)	415, 779
XcmI	CCANNNNNNNNNTGG	1 cut(s)	296
XmiI	GTMKAC	1 cut(s)	256
XmnI	GAANNNNTTC	1 cut(s)	39
ZrmI	AGTACT	1 cut(s)	323
Zsp2I	ATGCAT	1 cut(s)	423

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.