Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0014213

Physical Location & Seq

Genomic Coordinates Forward (+)

28785537 .. 28787310

Gene Structure 1774 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g28010.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 870 bp

ATGCATCACCACGAAGATGAAGACGACTCGGTTTTTCTCACTCTCGGCCCTCCCGGACAGCCGGTCCACAACCATGTCCTCTACCACCAACAATCCTCCTCCTCCTCCTCATCCACCCAGCCTCACCATCAAAACCCTAATTACAACTTCAATCACGAGGATGGTGTCACAGTAGCCCTTCACATTGGGCAGCCCTTGACCACTTCTGCACCTTCAAGCAACATCAACAACAATGTTCACATCGGTGCTCCTATGGAAGCAGGCCAGTACTGGATCCCTTCTGCGGCGCAAATCCTCGTCGGCCCGACTCAATTCTCATGCCCCGTCTGCGGCAAAACCTTCAACAGATTCAACAACATGCAGATGCATATGTGGGGGCATGGCTCGCAGTACAGGAAGGGACCTGAATCGTTGAGGGGAACGAAACCATCTTCATCCATACTCCGTCTGCCTTGTTACTGCTGCGCCGAGGGCTGCAGGAACAACATAGCTCACCCTAGGTCGCGGCCTCTGAAAGACTTCAGGACTCTGCAGACACATTACAAGAGGAAACACGGCACGAAGCCATTCTGTTGCCGGAAATGCGGCAAGCCGTTTGCGGTGAGAGGAGACTGGAGGACGCACGAGAAGAACTGCGGCAAGCTCTGGTTCTGCATCTGCGGATCGGATTTCAAGCACAAAAGGTCGCTCAAGGACCACGTGAGGAGCTTCGGTGACGGTCATGCACAGTACGCTGTGGAGCTCTGCGCTGAGGCTGAGGAAGATGAAGAAGAAGATCTGGAGGATGAGGATGATAATGACGAGAGTAGGGACACTAATGGAGGAGGTCAGCATCATGGAGTCGGGACGTCTGTTTATTTTAACTATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009058 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009812 GO:0009813 GO:0009888 GO:0009889 GO:0009965 GO:0010016 GO:0010051 GO:0010087 GO:0010154 GO:0010305 GO:0010468 GO:0010556 GO:0010588 GO:0019219 GO:0019222 GO:0022414 GO:0022622 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048316 GO:0048364 GO:0048366 GO:0048367 GO:0048598 GO:0048608 GO:0048731 GO:0048825 GO:0048826 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0071704 GO:0080090 GO:0090698 GO:0099402 GO:0140110 GO:1901576 GO:1903506 GO:1905392 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2 zf-met

Protein Analysis

290

Amino Acids

32.53

Weight (kDa)

6.61

Isoelectric Point (pI)

55.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C2H2_STOP2_3rd	PF23115	152 - 186	3.9e-19	STOP2-like, C2H2-type zinc finger
C2CH-3rd_BIRD-IDD	PF22995	189 - 213	8.4e-12	BIRD-IDD transcription factor, third C2HC zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014213)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13290
fragaria_vesca	FvH4_4g28010
malus_domestica	MD13G1045800.v1.1 MD16G1047400.v1.1
prunus_persica	Prupe.1G306200_v2.0.a1
pyrus_communis	pycom16g04140
rosa_chinensis	RchiOBHm_Chr4g0435741
rosa_laevigata	RLG00000006563
rosa_multiflora	Rmu_co8077120.1_g000001 Rmu_sc0000051.1_g000019
rosa_roxburghii	Rroxscaffold_5G00376930
rosa_rugosa	Rorug04G0289200
rosa_samantha	Rh4AG343500 Rh4BG352200 Rh4CG366700 Rh4DG346100
rosa_wichuraiana	Rw4G029990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	851
AccII	CGCG	1 cut(s)	505
AciI	CCGC	7 cut(s)	284, 330, 505, 585, 599, 636, 660
AclWI	GGATC	3 cut(s)	268, 281, 670
AcuI	CTGAAG	1 cut(s)	505
AcvI	CACGTG	1 cut(s)	700
AcyI	GRCGYC	1 cut(s)	848
AfaI	GTAC	3 cut(s)	269, 392, 731
AfiI	CCNNNNNNNGG	2 cut(s)	283, 329
AgsI	TTSAA	5 cut(s)	151, 216, 343, 352, 673
AhdI	GACNNNNNGTC	1 cut(s)	62
AleI	CACNNNNGTG	1 cut(s)	243
AluBI	AGCT	4 cut(s)	491, 643, 708, 742
AluI	AGCT	4 cut(s)	491, 643, 708, 742
Alw21I	GWGCWC	2 cut(s)	250, 744
Alw26I	GTCTC	1 cut(s)	603
AlwI	GGATC	3 cut(s)	268, 281, 670
AoxI	GGCC	4 cut(s)	46, 262, 301, 506
ApeKI	GCWGC	3 cut(s)	190, 462, 474
Asp700I	GAANNNNTTC	2 cut(s)	518, 566
AspA2I	CCTAGG	1 cut(s)	497
AspLEI	GCGC	3 cut(s)	289, 467, 749
AspS9I	GGNCC	5 cut(s)	47, 64, 302, 401, 694
AsuC2I	CCSGG	1 cut(s)	54
AsuHPI	GGTGA	4 cut(s)	116, 485, 613, 725
AvaII	GGWCC	3 cut(s)	64, 401, 694
AvrII	CCTAGG	1 cut(s)	497
BamHI	GGATCC	1 cut(s)	273
BanII	GRGCYC	1 cut(s)	744
BauI	CACGAG	2 cut(s)	155, 623
BbrPI	CACGTG	1 cut(s)	700
BbsI	GAAGAC	1 cut(s)	27
Bbv12I	GWGCWC	2 cut(s)	250, 744
BbvCI	CCTCAGC	2 cut(s)	750, 756
BbvI	GCAGC	3 cut(s)	202, 449, 461
BccI	CCATC	3 cut(s)	135, 155, 436
BceAI	ACGGC	2 cut(s)	571, 577
BcnI	CCSGG	1 cut(s)	54
BcoDI	GTCTC	1 cut(s)	603
BfaI	CTAG	1 cut(s)	498
BfmI	CTRYAG	2 cut(s)	475, 530
BglII	AGATCT	1 cut(s)	775
BisI	GCNGC	8 cut(s)	191, 285, 331, 463, 475, 506, 586, 637
BlnI	CCTAGG	1 cut(s)	497
BlsI	GCNGC	8 cut(s)	192, 286, 332, 464, 476, 507, 587, 638
BmcAI	AGTACT	1 cut(s)	269
Bme1390I	CCNGG	1 cut(s)	54
Bme18I	GGWCC	3 cut(s)	64, 401, 694
BmeRI	GACNNNNNGTC	1 cut(s)	62
BmgT120I	GGNCC	5 cut(s)	47, 64, 302, 401, 694
BmiI	GGNNCC	2 cut(s)	275, 402
BmrFI	CCNGG	1 cut(s)	54
BmsI	GCATC	4 cut(s)	13, 354, 663, 841
BpiI	GAAGAC	1 cut(s)	27
BpmI	CTGGAG	2 cut(s)	634, 800
Bpu10I	CCTNAGC	2 cut(s)	750, 756
BpuEI	CTTGAG	1 cut(s)	674
BpuMI	CCSGG	1 cut(s)	54
BsaAI	YACGTR	1 cut(s)	700
BsaHI	GRCGYC	1 cut(s)	848
BsaJI	CCNNGG	2 cut(s)	468, 497
BsaXI	ACNNNNNCTCC	2 cut(s)	697, 727
Bsc4I	CCNNNNNNNGG	2 cut(s)	283, 329
Bse118I	RCCGGY	1 cut(s)	61
Bse1I	ACTGG	3 cut(s)	265, 275, 617
BseDI	CCNNGG	2 cut(s)	468, 497
BseGI	GGATG	5 cut(s)	110, 166, 434, 790, 796
BseLI	CCNNNNNNNGG	2 cut(s)	283, 329
BseMII	CTCAG	2 cut(s)	741, 747
BseNI	ACTGG	3 cut(s)	265, 275, 617
BseRI	GAGGAG	7 cut(s)	88, 91, 94, 97, 621, 718, 837
BseXI	GCAGC	3 cut(s)	202, 449, 461
BseYI	CCCAGC	1 cut(s)	117
BsgI	GTGCAG	1 cut(s)	192
Bsh1236I	CGCG	1 cut(s)	505
BshFI	GGCC	4 cut(s)	48, 264, 303, 508
BsiHKAI	GWGCWC	2 cut(s)	250, 744
BsiSI	CCGG	3 cut(s)	54, 62, 577
BslFI	GGGAC	3 cut(s)	414, 824, 859
BslI	CCNNNNNNNGG	2 cut(s)	283, 329
BsmAI	GTCTC	1 cut(s)	603
BsmFI	GGGAC	3 cut(s)	414, 824, 859
BsnI	GGCC	4 cut(s)	48, 264, 303, 508
Bsp1286I	GDGCHC	2 cut(s)	250, 744
Bsp143I	GATC	3 cut(s)	273, 662, 775
BspACI	CCGC	7 cut(s)	284, 330, 505, 585, 599, 636, 660
BspANI	GGCC	4 cut(s)	48, 264, 303, 508
BspCNI	CTCAG	2 cut(s)	742, 748
BspFNI	CGCG	1 cut(s)	505
BspLI	GGNNCC	2 cut(s)	275, 402
BspMAI	CTGCAG	2 cut(s)	479, 534
BspPI	GGATC	3 cut(s)	268, 281, 670
BsrFI	RCCGGY	1 cut(s)	61
BsrI	ACTGG	3 cut(s)	265, 275, 617
BssAI	RCCGGY	1 cut(s)	61
BssECI	CCNNGG	2 cut(s)	468, 497
BssMI	GATC	3 cut(s)	273, 662, 775
BssNI	GRCGYC	1 cut(s)	848
BssSI	CACGAG	2 cut(s)	155, 623
BssT1I	CCWWGG	1 cut(s)	497
Bst2BI	CACGAG	2 cut(s)	155, 623
Bst4CI	ACNGT	3 cut(s)	172, 719, 729
BstACI	GRCGYC	1 cut(s)	848
BstBAI	YACGTR	1 cut(s)	700
BstC8I	GCNNGC	4 cut(s)	262, 386, 590, 641
BstDEI	CTNAG	2 cut(s)	750, 756
BstF5I	GGATG	5 cut(s)	110, 166, 434, 790, 796
BstFNI	CGCG	1 cut(s)	505
BstHHI	GCGC	3 cut(s)	289, 467, 749
BstKTI	GATC	3 cut(s)	276, 665, 778
BstMAI	GTCTC	1 cut(s)	603
BstMBI	GATC	3 cut(s)	273, 662, 775
BstMWI	GCNNNNNNNGC	5 cut(s)	327, 385, 471, 582, 731
BstNSI	RCATGY	1 cut(s)	361
BstSCI	CCNGG	1 cut(s)	52
BstSFI	CTRYAG	2 cut(s)	475, 530
BstUI	CGCG	1 cut(s)	505
BstV1I	GCAGC	3 cut(s)	202, 449, 461
BstV2I	GAAGAC	1 cut(s)	27
BstX2I	RGATCY	2 cut(s)	273, 775
BstYI	RGATCY	2 cut(s)	273, 775
BsuRI	GGCC	4 cut(s)	48, 264, 303, 508
BtsCI	GGATG	5 cut(s)	110, 166, 434, 790, 796
Cac8I	GCNNGC	4 cut(s)	262, 386, 590, 641
CfoI	GCGC	3 cut(s)	289, 467, 749
Cfr10I	RCCGGY	1 cut(s)	61
Cfr13I	GGNCC	5 cut(s)	47, 64, 302, 401, 694
CseI	GACGC	1 cut(s)	628
Csp6I	GTAC	3 cut(s)	268, 391, 730
CviAII	CATG	6 cut(s)	74, 318, 358, 380, 722, 836
CviQI	GTAC	3 cut(s)	268, 391, 730
DdeI	CTNAG	2 cut(s)	750, 756
DpnI	GATC	3 cut(s)	275, 664, 777
DpnII	GATC	3 cut(s)	273, 662, 775
DriI	GACNNNNNGTC	1 cut(s)	62
Eam1105I	GACNNNNNGTC	1 cut(s)	62
Ecl136II	GAGCTC	1 cut(s)	742
Eco130I	CCWWGG	1 cut(s)	497
Eco24I	GRGCYC	1 cut(s)	744
Eco47I	GGWCC	3 cut(s)	64, 401, 694
Eco53kI	GAGCTC	1 cut(s)	742
Eco57I	CTGAAG	1 cut(s)	505
Eco72I	CACGTG	1 cut(s)	700
EcoICRI	GAGCTC	1 cut(s)	742
EcoO109I	RGGNCCY	1 cut(s)	401
EcoT14I	CCWWGG	1 cut(s)	497
EcoT22I	ATGCAT	2 cut(s)	6, 369
EcoT38I	GRGCYC	1 cut(s)	744
ErhI	CCWWGG	1 cut(s)	497
FaeI	CATG	6 cut(s)	77, 321, 361, 383, 725, 839
FaqI	GGGAC	3 cut(s)	414, 824, 859
FatI	CATG	6 cut(s)	73, 317, 357, 379, 721, 835
FauNDI	CATATG	1 cut(s)	369
Fnu4HI	GCNGC	8 cut(s)	191, 285, 331, 463, 475, 506, 586, 637
FokI	GGATG	5 cut(s)	97, 173, 421, 797, 803
FriOI	GRGCYC	1 cut(s)	744
Fsp4HI	GCNGC	8 cut(s)	191, 285, 331, 463, 475, 506, 586, 637
FspBI	CTAG	1 cut(s)	498
GlaI	GCGC	3 cut(s)	288, 466, 748
GluI	GCNGC	8 cut(s)	191, 285, 331, 463, 475, 506, 586, 637
GsaI	CCCAGC	1 cut(s)	121
GsuI	CTGGAG	2 cut(s)	634, 800
HaeIII	GGCC	4 cut(s)	48, 264, 303, 508
HapII	CCGG	3 cut(s)	54, 62, 577
HgaI	GACGC	1 cut(s)	628
HhaI	GCGC	3 cut(s)	289, 467, 749
Hin1I	GRCGYC	1 cut(s)	848
Hin1II	CATG	6 cut(s)	77, 321, 361, 383, 725, 839
Hin6I	GCGC	3 cut(s)	287, 465, 747
HinP1I	GCGC	3 cut(s)	287, 465, 747
HinfI	GANTC	6 cut(s)	26, 307, 348, 407, 526, 840
HpaII	CCGG	3 cut(s)	54, 62, 577
HphI	GGTGA	4 cut(s)	116, 485, 613, 725
Hpy166II	GTNNAC	2 cut(s)	67, 238
Hpy188I	TCNGA	2 cut(s)	513, 667
Hpy188III	TCNNGA	4 cut(s)	155, 523, 779, 844
Hpy8I	GTNNAC	2 cut(s)	67, 238
Hpy99I	CGWCG	1 cut(s)	302
HpyAV	CCTTC	5 cut(s)	188, 222, 288, 349, 391
HpyCH4III	ACNGT	3 cut(s)	172, 719, 729
HpyCH4IV	ACGT	2 cut(s)	699, 848
HpyCH4V	TGCA	8 cut(s)	4, 209, 361, 367, 477, 532, 654, 725
HpyF10VI	GCNNNNNNNGC	5 cut(s)	327, 385, 471, 582, 731
HpyF3I	CTNAG	2 cut(s)	750, 756
HpySE526I	ACGT	2 cut(s)	699, 848
Hsp92I	GRCGYC	1 cut(s)	848
Hsp92II	CATG	6 cut(s)	77, 321, 361, 383, 725, 839
HspAI	GCGC	3 cut(s)	287, 465, 747
Kzo9I	GATC	3 cut(s)	273, 662, 775
LmnI	GCTCC	3 cut(s)	253, 705, 739
Lsp1109I	GCAGC	3 cut(s)	202, 449, 461
LweI	GCATC	4 cut(s)	13, 354, 663, 841
MaeI	CTAG	1 cut(s)	498
MaeII	ACGT	2 cut(s)	699, 848
MaeIII	GTNAC	3 cut(s)	166, 455, 713
MalI	GATC	3 cut(s)	275, 664, 777
MboI	GATC	3 cut(s)	273, 662, 775
MboII	GAAGA	8 cut(s)	26, 32, 423, 640, 773, 779, 782, 785
MflI	RGATCY	2 cut(s)	273, 775
MhlI	GDGCHC	2 cut(s)	250, 744
MluCI	AATT	2 cut(s)	139, 311
MlyI	GAGTC	4 cut(s)	20, 301, 520, 849
Mph1103I	ATGCAT	2 cut(s)	6, 369
MroXI	GAANNNNTTC	2 cut(s)	518, 566
MseI	TTAA	1 cut(s)	861
MslI	CAYNNNNRTG	5 cut(s)	15, 72, 159, 243, 362
MspI	CCGG	3 cut(s)	54, 62, 577
MspR9I	CCNGG	1 cut(s)	54
MvnI	CGCG	1 cut(s)	505
MwoI	GCNNNNNNNGC	5 cut(s)	327, 385, 471, 582, 731
NciI	CCSGG	1 cut(s)	54
NdeI	CATATG	1 cut(s)	369
NdeII	GATC	3 cut(s)	273, 662, 775
NlaIII	CATG	6 cut(s)	77, 321, 361, 383, 725, 839
NlaIV	GGNNCC	2 cut(s)	275, 402
NmeAIII	GCCGAG	2 cut(s)	24, 493
NmuCI	GTSAC	2 cut(s)	166, 713
NsiI	ATGCAT	2 cut(s)	6, 369
NspI	RCATGY	1 cut(s)	361
OliI	CACNNNNGTG	1 cut(s)	243
PdmI	GAANNNNTTC	2 cut(s)	518, 566
PfeI	GAWTC	2 cut(s)	348, 407
PfoI	TCCNGGA	1 cut(s)	52
PkrI	GCNGC	8 cut(s)	192, 286, 332, 464, 476, 507, 587, 638
PleI	GAGTC	4 cut(s)	20, 301, 520, 848
PmaCI	CACGTG	1 cut(s)	700
PmlI	CACGTG	1 cut(s)	700
PpsI	GAGTC	4 cut(s)	20, 301, 520, 848
Ppu21I	YACGTR	1 cut(s)	700
PpuMI	RGGWCCY	1 cut(s)	401
Psp124BI	GAGCTC	1 cut(s)	744
Psp5II	RGGWCCY	1 cut(s)	401
PspCI	CACGTG	1 cut(s)	700
PspFI	CCCAGC	1 cut(s)	117
PspN4I	GGNNCC	2 cut(s)	275, 402
PspPI	GGNCC	5 cut(s)	47, 64, 302, 401, 694
PspPPI	RGGWCCY	1 cut(s)	401
PstI	CTGCAG	2 cut(s)	479, 534
PsuI	RGATCY	2 cut(s)	273, 775
RsaI	GTAC	3 cut(s)	269, 392, 731
RsaNI	GTAC	3 cut(s)	268, 391, 730
RseI	CAYNNNNRTG	5 cut(s)	15, 72, 159, 243, 362
SacI	GAGCTC	1 cut(s)	744
SaqAI	TTAA	1 cut(s)	861
SatI	GCNGC	8 cut(s)	191, 285, 331, 463, 475, 506, 586, 637
Sau3AI	GATC	3 cut(s)	273, 662, 775
Sau96I	GGNCC	5 cut(s)	47, 64, 302, 401, 694
ScaI	AGTACT	1 cut(s)	269
SchI	GAGTC	4 cut(s)	20, 301, 520, 849
ScrFI	CCNGG	1 cut(s)	54
SduI	GDGCHC	2 cut(s)	250, 744
SfaNI	GCATC	4 cut(s)	13, 354, 663, 841
SfcI	CTRYAG	2 cut(s)	475, 530
SinI	GGWCC	3 cut(s)	64, 401, 694
SmiMI	CAYNNNNRTG	5 cut(s)	15, 72, 159, 243, 362
SmlI	CTYRAG	1 cut(s)	689
SmoI	CTYRAG	1 cut(s)	689
Sse9I	AATT	2 cut(s)	139, 311
SsiI	CCGC	7 cut(s)	284, 330, 505, 585, 599, 636, 660
SspMI	CTAG	1 cut(s)	498
SstI	GAGCTC	1 cut(s)	744
StyD4I	CCNGG	1 cut(s)	52
StyI	CCWWGG	1 cut(s)	497
TaaI	ACNGT	3 cut(s)	172, 719, 729
TaiI	ACGT	2 cut(s)	702, 851
TasI	AATT	2 cut(s)	139, 311
TatI	WGTACW	2 cut(s)	267, 390
TauI	GCSGC	5 cut(s)	287, 333, 508, 588, 639
TfiI	GAWTC	2 cut(s)	348, 407
Tru1I	TTAA	1 cut(s)	861
Tru9I	TTAA	1 cut(s)	861
TseFI	GTSAC	2 cut(s)	166, 713
TseI	GCWGC	3 cut(s)	190, 462, 474
Tsp45I	GTSAC	2 cut(s)	166, 713
TspDTI	ATGAA	3 cut(s)	33, 423, 780
TspGWI	ACGGA	1 cut(s)	434
VpaK11BI	GGWCC	3 cut(s)	64, 401, 694
XceI	RCATGY	1 cut(s)	361
XmaJI	CCTAGG	1 cut(s)	497
XmnI	GAANNNNTTC	2 cut(s)	518, 566
XspI	CTAG	1 cut(s)	498
ZraI	GACGTC	1 cut(s)	849
ZrmI	AGTACT	1 cut(s)	269
Zsp2I	ATGCAT	2 cut(s)	6, 369

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.