Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8077120.1

Orthogroup ID

OG0014213

Physical Location & Seq

Genomic Coordinates Forward (+)

28 .. 531

Gene Structure 504 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8077120.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

atgcatatgtgggggcacggctcgcagtaccggaagggaccagaatcgttgaggggaacgaagccatcttcatccatactccgtcttccatgttactgctgcgccgagggctgcaggaataacatagaccacccgaggtcaaggccgctgaaagacttcagaactctgcagacacattacaagaggaagcacgggacgaagccttttggttgccgcaaatgcggcaagccatttgcggtgagaggagactggagaacgcacgagaagaactgcggcaagctctggttctgcatctgcggctcggatttcaagcacaaaaggtcgcttaaggaccacgtgaggagtttcggtgatggccacgcgcagtacgctgtggagctgtgcgctgaagctgaggagaatgaagaagaagatctagaggatgaggatgacaatgacgaaagcagggacactaatggaggaggtcagcatcatggagttgggtctgtttattttaactattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009058 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009812 GO:0009813 GO:0009888 GO:0009889 GO:0009965 GO:0010016 GO:0010051 GO:0010087 GO:0010154 GO:0010305 GO:0010468 GO:0010556 GO:0010588 GO:0019219 GO:0019222 GO:0022414 GO:0022622 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048316 GO:0048364 GO:0048366 GO:0048367 GO:0048598 GO:0048608 GO:0048731 GO:0048825 GO:0048826 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0071704 GO:0080090 GO:0090698 GO:0099402 GO:0140110 GO:1901576 GO:1903506 GO:1905392 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2 zf-met

Protein Analysis

167

Amino Acids

19.16

Weight (kDa)

8.04

Isoelectric Point (pI)

48.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014213)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13290
fragaria_vesca	FvH4_4g28010
malus_domestica	MD13G1045800.v1.1 MD16G1047400.v1.1
prunus_persica	Prupe.1G306200_v2.0.a1
pyrus_communis	pycom16g04140
rosa_chinensis	RchiOBHm_Chr4g0435741
rosa_laevigata	RLG00000006563
rosa_multiflora	Rmu_co8077120.1_g000001 Rmu_sc0000051.1_g000019
rosa_roxburghii	Rroxscaffold_5G00376930
rosa_rugosa	Rorug04G0289200
rosa_samantha	Rh4AG343500 Rh4BG352200 Rh4CG366700 Rh4DG346100
rosa_wichuraiana	Rw4G029990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	362
AciI	CCGC	6 cut(s)	146, 214, 222, 236, 273, 297
AcoI	YGGCCR	1 cut(s)	355
AcuI	CTGAAG	2 cut(s)	142, 408
AcvI	CACGTG	1 cut(s)	337
AfaI	GTAC	2 cut(s)	29, 368
AflII	CTTAAG	1 cut(s)	326
AgsI	TTSAA	1 cut(s)	310
AluBI	AGCT	3 cut(s)	280, 379, 392
AluI	AGCT	3 cut(s)	280, 379, 392
Alw26I	GTCTC	1 cut(s)	240
Ama87I	CYCGRG	1 cut(s)	133
AoxI	GGCC	2 cut(s)	143, 355
ApeKI	GCWGC	2 cut(s)	99, 111
Asp700I	GAANNNNTTC	1 cut(s)	155
AspLEI	GCGC	3 cut(s)	104, 364, 386
AspS9I	GGNCC	2 cut(s)	38, 331
AsuHPI	GGTGA	2 cut(s)	250, 362
AvaI	CYCGRG	1 cut(s)	133
AvaII	GGWCC	2 cut(s)	38, 331
BaeGI	GKGCMC	1 cut(s)	18
BalI	TGGCCA	1 cut(s)	357
BauI	CACGAG	1 cut(s)	260
BbrPI	CACGTG	1 cut(s)	337
BbsI	GAAGAC	1 cut(s)	77
BbvCI	CCTCAGC	1 cut(s)	393
BbvI	GCAGC	2 cut(s)	86, 98
BccI	CCATC	2 cut(s)	73, 347
BceAI	ACGGC	1 cut(s)	34
BcoDI	GTCTC	1 cut(s)	240
BfaI	CTAG	1 cut(s)	416
BfmI	CTRYAG	2 cut(s)	112, 167
BfrI	CTTAAG	1 cut(s)	326
BglII	AGATCT	1 cut(s)	412
BisI	GCNGC	7 cut(s)	100, 112, 146, 214, 223, 274, 298
BlsI	GCNGC	7 cut(s)	101, 113, 147, 215, 224, 275, 299
Bme18I	GGWCC	2 cut(s)	38, 331
BmeT110I	CYCGRG	1 cut(s)	133
BmgT120I	GGNCC	2 cut(s)	38, 331
BmiI	GGNNCC	1 cut(s)	39
BmsI	GCATC	2 cut(s)	300, 478
BpiI	GAAGAC	1 cut(s)	77
BpmI	CTGGAG	1 cut(s)	271
Bpu10I	CCTNAGC	1 cut(s)	393
BsaAI	YACGTR	1 cut(s)	337
BsaJI	CCNNGG	2 cut(s)	105, 134
BsaWI	WCCGGW	1 cut(s)	30
BsaXI	ACNNNNNCTCC	2 cut(s)	334, 364
Bse1I	ACTGG	1 cut(s)	254
BseDI	CCNNGG	2 cut(s)	105, 134
BseGI	GGATG	3 cut(s)	71, 427, 433
BseMII	CTCAG	1 cut(s)	384
BseNI	ACTGG	1 cut(s)	254
BseRI	GAGGAG	4 cut(s)	258, 355, 410, 474
BseSI	GKGCMC	1 cut(s)	18
BseXI	GCAGC	2 cut(s)	86, 98
Bsh1236I	CGCG	1 cut(s)	362
BshFI	GGCC	2 cut(s)	145, 357
BsiHKCI	CYCGRG	1 cut(s)	133
BsiSI	CCGG	1 cut(s)	31
BslFI	GGGAC	3 cut(s)	51, 208, 461
BsmAI	GTCTC	1 cut(s)	240
BsmFI	GGGAC	3 cut(s)	51, 208, 461
BsnI	GGCC	2 cut(s)	145, 357
BsoBI	CYCGRG	1 cut(s)	133
Bsp1286I	GDGCHC	1 cut(s)	18
Bsp143I	GATC	1 cut(s)	412
BspACI	CCGC	6 cut(s)	146, 214, 222, 236, 273, 297
BspANI	GGCC	2 cut(s)	145, 357
BspCNI	CTCAG	1 cut(s)	385
BspFNI	CGCG	1 cut(s)	362
BspLI	GGNNCC	1 cut(s)	39
BspMAI	CTGCAG	2 cut(s)	116, 171
BspTI	CTTAAG	1 cut(s)	326
BsrI	ACTGG	1 cut(s)	254
BssECI	CCNNGG	2 cut(s)	105, 134
BssMI	GATC	1 cut(s)	412
BssSI	CACGAG	1 cut(s)	260
Bst2BI	CACGAG	1 cut(s)	260
BstAFI	CTTAAG	1 cut(s)	326
BstBAI	YACGTR	1 cut(s)	337
BstC8I	GCNNGC	3 cut(s)	23, 227, 278
BstDEI	CTNAG	1 cut(s)	393
BstF5I	GGATG	3 cut(s)	71, 427, 433
BstFNI	CGCG	1 cut(s)	362
BstHHI	GCGC	3 cut(s)	104, 364, 386
BstKTI	GATC	1 cut(s)	415
BstMAI	GTCTC	1 cut(s)	240
BstMBI	GATC	1 cut(s)	412
BstMWI	GCNNNNNNNGC	6 cut(s)	22, 108, 219, 222, 297, 368
BstSFI	CTRYAG	2 cut(s)	112, 167
BstSLI	GKGCMC	1 cut(s)	18
BstUI	CGCG	1 cut(s)	362
BstV1I	GCAGC	2 cut(s)	86, 98
BstV2I	GAAGAC	1 cut(s)	77
BstX2I	RGATCY	1 cut(s)	412
BstYI	RGATCY	1 cut(s)	412
BsuRI	GGCC	2 cut(s)	145, 357
BtsCI	GGATG	3 cut(s)	71, 427, 433
Cac8I	GCNNGC	3 cut(s)	23, 227, 278
CfoI	GCGC	3 cut(s)	104, 364, 386
Cfr13I	GGNCC	2 cut(s)	38, 331
Csp6I	GTAC	2 cut(s)	28, 367
CviAII	CATG	2 cut(s)	90, 473
CviQI	GTAC	2 cut(s)	28, 367
DdeI	CTNAG	1 cut(s)	393
DpnI	GATC	1 cut(s)	414
DpnII	GATC	1 cut(s)	412
EaeI	YGGCCR	1 cut(s)	355
Eco47I	GGWCC	2 cut(s)	38, 331
Eco57I	CTGAAG	2 cut(s)	142, 408
Eco72I	CACGTG	1 cut(s)	337
Eco88I	CYCGRG	1 cut(s)	133
EcoT22I	ATGCAT	1 cut(s)	6
FaeI	CATG	2 cut(s)	93, 476
FaiI	YATR	6 cut(s)	6, 8, 77, 91, 125, 474
FaqI	GGGAC	3 cut(s)	51, 208, 461
FatI	CATG	2 cut(s)	89, 472
FauNDI	CATATG	1 cut(s)	6
Fnu4HI	GCNGC	7 cut(s)	100, 112, 146, 214, 223, 274, 298
FokI	GGATG	3 cut(s)	58, 434, 440
Fsp4HI	GCNGC	7 cut(s)	100, 112, 146, 214, 223, 274, 298
FspBI	CTAG	1 cut(s)	416
GlaI	GCGC	3 cut(s)	103, 363, 385
GluI	GCNGC	7 cut(s)	100, 112, 146, 214, 223, 274, 298
GsuI	CTGGAG	1 cut(s)	271
HaeIII	GGCC	2 cut(s)	145, 357
HapII	CCGG	1 cut(s)	31
HhaI	GCGC	3 cut(s)	104, 364, 386
Hin1II	CATG	2 cut(s)	93, 476
Hin6I	GCGC	3 cut(s)	102, 362, 384
HinP1I	GCGC	3 cut(s)	102, 362, 384
HinfI	GANTC	1 cut(s)	44
HpaII	CCGG	1 cut(s)	31
HphI	GGTGA	2 cut(s)	250, 362
Hpy188I	TCNGA	2 cut(s)	161, 304
Hpy188III	TCNNGA	1 cut(s)	416
HpyAV	CCTTC	1 cut(s)	28
HpyCH4IV	ACGT	1 cut(s)	336
HpyCH4V	TGCA	4 cut(s)	4, 114, 169, 291
HpyF10VI	GCNNNNNNNGC	6 cut(s)	22, 108, 219, 222, 297, 368
HpyF3I	CTNAG	1 cut(s)	393
HpySE526I	ACGT	1 cut(s)	336
Hsp92II	CATG	2 cut(s)	93, 476
HspAI	GCGC	3 cut(s)	102, 362, 384
Kzo9I	GATC	1 cut(s)	412
LmnI	GCTCC	1 cut(s)	376
LpnPI	CCDG	6 cut(s)	44, 54, 100, 235, 268, 430
Lsp1109I	GCAGC	2 cut(s)	86, 98
LweI	GCATC	2 cut(s)	300, 478
MaeI	CTAG	1 cut(s)	416
MaeII	ACGT	1 cut(s)	336
MaeIII	GTNAC	1 cut(s)	92
MalI	GATC	1 cut(s)	414
MboI	GATC	1 cut(s)	412
MboII	GAAGA	6 cut(s)	60, 77, 277, 416, 419, 422
MflI	RGATCY	1 cut(s)	412
MhlI	GDGCHC	1 cut(s)	18
MlsI	TGGCCA	1 cut(s)	357
MluNI	TGGCCA	1 cut(s)	357
Mox20I	TGGCCA	1 cut(s)	357
Mph1103I	ATGCAT	1 cut(s)	6
MroXI	GAANNNNTTC	1 cut(s)	155
MscI	TGGCCA	1 cut(s)	357
MseI	TTAA	3 cut(s)	327, 495, 502
Msp20I	TGGCCA	1 cut(s)	357
MspA1I	CMGCKG	1 cut(s)	148
MspCI	CTTAAG	1 cut(s)	326
MspI	CCGG	1 cut(s)	31
MvnI	CGCG	1 cut(s)	362
MwoI	GCNNNNNNNGC	6 cut(s)	22, 108, 219, 222, 297, 368
NdeI	CATATG	1 cut(s)	6
NdeII	GATC	1 cut(s)	412
NlaIII	CATG	2 cut(s)	93, 476
NlaIV	GGNNCC	1 cut(s)	39
NmeAIII	GCCGAG	1 cut(s)	130
NsiI	ATGCAT	1 cut(s)	6
PdmI	GAANNNNTTC	1 cut(s)	155
PfeI	GAWTC	1 cut(s)	44
PkrI	GCNGC	7 cut(s)	101, 113, 147, 215, 224, 275, 299
PmaCI	CACGTG	1 cut(s)	337
PmlI	CACGTG	1 cut(s)	337
Ppu21I	YACGTR	1 cut(s)	337
PspCI	CACGTG	1 cut(s)	337
PspN4I	GGNNCC	1 cut(s)	39
PspPI	GGNCC	2 cut(s)	38, 331
PstI	CTGCAG	2 cut(s)	116, 171
PsuI	RGATCY	1 cut(s)	412
RsaI	GTAC	2 cut(s)	29, 368
RsaNI	GTAC	2 cut(s)	28, 367
SaqAI	TTAA	3 cut(s)	327, 495, 502
SatI	GCNGC	7 cut(s)	100, 112, 146, 214, 223, 274, 298
Sau3AI	GATC	1 cut(s)	412
Sau96I	GGNCC	2 cut(s)	38, 331
SduI	GDGCHC	1 cut(s)	18
SetI	ASST	7 cut(s)	140, 282, 323, 339, 381, 394, 466
SfaNI	GCATC	2 cut(s)	300, 478
SfcI	CTRYAG	2 cut(s)	112, 167
SinI	GGWCC	2 cut(s)	38, 331
SmlI	CTYRAG	1 cut(s)	326
SmoI	CTYRAG	1 cut(s)	326
SsiI	CCGC	6 cut(s)	146, 214, 222, 236, 273, 297
SspMI	CTAG	1 cut(s)	416
TaiI	ACGT	1 cut(s)	339
TauI	GCSGC	5 cut(s)	148, 216, 225, 276, 300
TfiI	GAWTC	1 cut(s)	44
Tru1I	TTAA	3 cut(s)	327, 495, 502
Tru9I	TTAA	3 cut(s)	327, 495, 502
TseI	GCWGC	2 cut(s)	99, 111
TspDTI	ATGAA	2 cut(s)	60, 417
TspGWI	ACGGA	1 cut(s)	71
Vha464I	CTTAAG	1 cut(s)	326
VpaK11BI	GGWCC	2 cut(s)	38, 331
XbaI	TCTAGA	1 cut(s)	415
XmnI	GAANNNNTTC	1 cut(s)	155
XspI	CTAG	1 cut(s)	416
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.