Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0014213

Physical Location & Seq

Genomic Coordinates Forward (+)

57508705 .. 57510049

Gene Structure 1345 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00376930.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 864 bp

ATGCATCACCAAGTAGATGAAGACGACTCGGTTTTTCTCACTCTCGGCCCTCCCGGACAGCCAGTTCACAGCCACATCCTCTACCACCAACAATCATCCTCCTCCTCATCTACCCAGCCTCACCATCAAAACCCTAATTATAGCACAAACCATGAGGATGGTGTCACAGTAGCCCTTCACATTGGGCAGCCCTTTACCACTTCTCGACCTTCAAGCAACAACAACAACAACAATGTTCACATTGGTGCTCCTATGGAAGGCCAGTACTGGATCCCTTCTCCAGCGCAAATCCTCGTCGGCCCGACTCAGTTCTCCTGCCCCGTCTGCGGCAAAACCTTCAACAGATACAACAACATGCAGATGCATATGTGGGGGCACGGCTCGCAGTACCGGAAGGGACCAGAATCGTTGAGGGGAACGAAGCCATCTTCATCCATACTCCGTCTTCCATGTTACTGCTGCGCCGAGGGCTGCAGGAATAACATAGACCACCCGAGGTCAAGGCCGCTGAAAGACTTCAGAACTCTGCAGACACATTACAAGAGGAAGCACGGGACGAAGCCGTTTGGTTGCCGCAAATGCGGCAAGCCGTTTGCGGTGAGAGGAGACTGGAGAACGCACGAGAAGAACTGCGGCAAGCTCTGGTTCTGCATCTGCGGCTCGGATTTCAAGCACAAAAGGTCGCTCAAGGACCACGTGAGGAGTTTCGGTGATGGCCACGCGCAGTACGCTGTGGAGCTGTGCGCTGAAGCTGAGGAGGATGAAGAAGAAGATCTAGAGGATGAGGATGATAATGACGAAAGCAGGGACACTAATGGAGGAGGTCAGCATCATGGAGTTGGGTCTGTTTATTTTAACTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009058 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009812 GO:0009813 GO:0009888 GO:0009889 GO:0009965 GO:0010016 GO:0010051 GO:0010087 GO:0010154 GO:0010305 GO:0010468 GO:0010556 GO:0010588 GO:0019219 GO:0019222 GO:0022414 GO:0022622 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048316 GO:0048364 GO:0048366 GO:0048367 GO:0048598 GO:0048608 GO:0048731 GO:0048825 GO:0048826 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0071704 GO:0080090 GO:0090698 GO:0099402 GO:0140110 GO:1901576 GO:1903506 GO:1905392 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2 zf-met

Protein Analysis

287

Amino Acids

32.42

Weight (kDa)

6.71

Isoelectric Point (pI)

57.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C2H2_STOP2_3rd	PF23115	151 - 185	1.3e-19	STOP2-like, C2H2-type zinc finger
C2CH-3rd_BIRD-IDD	PF22995	188 - 212	3.2e-12	BIRD-IDD transcription factor, third C2HC zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014213)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13290
fragaria_vesca	FvH4_4g28010
malus_domestica	MD13G1045800.v1.1 MD16G1047400.v1.1
prunus_persica	Prupe.1G306200_v2.0.a1
pyrus_communis	pycom16g04140
rosa_chinensis	RchiOBHm_Chr4g0435741
rosa_laevigata	RLG00000006563
rosa_multiflora	Rmu_co8077120.1_g000001 Rmu_sc0000051.1_g000019
rosa_roxburghii	Rroxscaffold_5G00376930
rosa_rugosa	Rorug04G0289200
rosa_samantha	Rh4AG343500 Rh4BG352200 Rh4CG366700 Rh4DG346100
rosa_wichuraiana	Rw4G029990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	722
AciI	CCGC	7 cut(s)	327, 506, 574, 582, 596, 633, 657
AclWI	GGATC	2 cut(s)	265, 278
AcoI	YGGCCR	1 cut(s)	715
AcuI	CTGAAG	2 cut(s)	502, 768
AcvI	CACGTG	1 cut(s)	697
AfaI	GTAC	3 cut(s)	266, 389, 728
AfiI	CCNNNNNNNGG	2 cut(s)	257, 326
AgsI	TTSAA	3 cut(s)	213, 340, 670
AleI	CACNNNNGTG	1 cut(s)	243
AloI	GAACNNNNNNTCC	2 cut(s)	48, 80
AluBI	AGCT	3 cut(s)	640, 739, 752
AluI	AGCT	3 cut(s)	640, 739, 752
Alw21I	GWGCWC	1 cut(s)	250
Alw26I	GTCTC	1 cut(s)	600
AlwI	GGATC	2 cut(s)	265, 278
Ama87I	CYCGRG	1 cut(s)	493
AoxI	GGCC	5 cut(s)	46, 259, 298, 503, 715
ApeKI	GCWGC	3 cut(s)	187, 459, 471
Asp700I	GAANNNNTTC	1 cut(s)	515
AspLEI	GCGC	4 cut(s)	286, 464, 724, 746
AspS9I	GGNCC	4 cut(s)	47, 299, 398, 691
AsuC2I	CCSGG	1 cut(s)	54
AsuHPI	GGTGA	3 cut(s)	113, 610, 722
AvaI	CYCGRG	1 cut(s)	493
AvaII	GGWCC	2 cut(s)	398, 691
BaeGI	GKGCMC	1 cut(s)	378
BalI	TGGCCA	1 cut(s)	717
BamHI	GGATCC	1 cut(s)	270
BauI	CACGAG	1 cut(s)	620
BbrPI	CACGTG	1 cut(s)	697
BbsI	GAAGAC	2 cut(s)	27, 437
Bbv12I	GWGCWC	1 cut(s)	250
BbvCI	CCTCAGC	1 cut(s)	753
BbvI	GCAGC	3 cut(s)	199, 446, 458
BccI	CCATC	4 cut(s)	132, 152, 433, 707
BceAI	ACGGC	3 cut(s)	394, 547, 574
BcnI	CCSGG	1 cut(s)	54
BcoDI	GTCTC	1 cut(s)	600
BfaI	CTAG	1 cut(s)	776
BfmI	CTRYAG	2 cut(s)	472, 527
BglII	AGATCT	1 cut(s)	772
BisI	GCNGC	9 cut(s)	188, 328, 460, 472, 506, 574, 583, 634, 658
BlsI	GCNGC	9 cut(s)	189, 329, 461, 473, 507, 575, 584, 635, 659
BmcAI	AGTACT	1 cut(s)	266
Bme1390I	CCNGG	1 cut(s)	54
Bme18I	GGWCC	2 cut(s)	398, 691
BmeT110I	CYCGRG	1 cut(s)	493
BmgT120I	GGNCC	4 cut(s)	47, 299, 398, 691
BmiI	GGNNCC	2 cut(s)	272, 399
BmrFI	CCNGG	1 cut(s)	54
BmsI	GCATC	4 cut(s)	13, 351, 660, 838
BpiI	GAAGAC	2 cut(s)	27, 437
BpmI	CTGGAG	2 cut(s)	264, 631
Bpu10I	CCTNAGC	1 cut(s)	753
BpuEI	CTTGAG	1 cut(s)	671
BpuMI	CCSGG	1 cut(s)	54
BsaAI	YACGTR	1 cut(s)	697
BsaJI	CCNNGG	2 cut(s)	465, 494
BsaWI	WCCGGW	1 cut(s)	390
BsaXI	ACNNNNNCTCC	2 cut(s)	694, 724
Bsc4I	CCNNNNNNNGG	2 cut(s)	257, 326
Bse1I	ACTGG	4 cut(s)	62, 262, 272, 614
BseDI	CCNNGG	2 cut(s)	465, 494
BseGI	GGATG	7 cut(s)	75, 95, 163, 431, 766, 787, 793
BseLI	CCNNNNNNNGG	2 cut(s)	257, 326
BseMII	CTCAG	2 cut(s)	320, 744
BseNI	ACTGG	4 cut(s)	62, 262, 272, 614
BseRI	GAGGAG	6 cut(s)	91, 94, 618, 715, 770, 834
BseSI	GKGCMC	1 cut(s)	378
BseXI	GCAGC	3 cut(s)	199, 446, 458
BseYI	CCCAGC	1 cut(s)	114
Bsh1236I	CGCG	1 cut(s)	722
BshFI	GGCC	5 cut(s)	48, 261, 300, 505, 717
BsiHKAI	GWGCWC	1 cut(s)	250
BsiHKCI	CYCGRG	1 cut(s)	493
BsiSI	CCGG	2 cut(s)	54, 391
BslFI	GGGAC	3 cut(s)	411, 568, 821
BslI	CCNNNNNNNGG	2 cut(s)	257, 326
BsmAI	GTCTC	1 cut(s)	600
BsmFI	GGGAC	3 cut(s)	411, 568, 821
BsnI	GGCC	5 cut(s)	48, 261, 300, 505, 717
BsoBI	CYCGRG	1 cut(s)	493
Bsp1286I	GDGCHC	2 cut(s)	250, 378
Bsp143I	GATC	2 cut(s)	270, 772
BspACI	CCGC	7 cut(s)	327, 506, 574, 582, 596, 633, 657
BspANI	GGCC	5 cut(s)	48, 261, 300, 505, 717
BspCNI	CTCAG	2 cut(s)	319, 745
BspFNI	CGCG	1 cut(s)	722
BspLI	GGNNCC	2 cut(s)	272, 399
BspMAI	CTGCAG	2 cut(s)	476, 531
BspPI	GGATC	2 cut(s)	265, 278
BsrI	ACTGG	4 cut(s)	62, 262, 272, 614
BssECI	CCNNGG	2 cut(s)	465, 494
BssMI	GATC	2 cut(s)	270, 772
BssSI	CACGAG	1 cut(s)	620
Bst2BI	CACGAG	1 cut(s)	620
Bst4CI	ACNGT	1 cut(s)	169
BstBAI	YACGTR	1 cut(s)	697
BstC8I	GCNNGC	3 cut(s)	383, 587, 638
BstDEI	CTNAG	2 cut(s)	306, 753
BstENI	CCTNNNNNAGG	1 cut(s)	255
BstF5I	GGATG	7 cut(s)	75, 95, 163, 431, 766, 787, 793
BstFNI	CGCG	1 cut(s)	722
BstHHI	GCGC	4 cut(s)	286, 464, 724, 746
BstKTI	GATC	2 cut(s)	273, 775
BstMAI	GTCTC	1 cut(s)	600
BstMBI	GATC	2 cut(s)	270, 772
BstMWI	GCNNNNNNNGC	7 cut(s)	324, 382, 468, 579, 582, 657, 728
BstNSI	RCATGY	1 cut(s)	358
BstSCI	CCNGG	1 cut(s)	52
BstSFI	CTRYAG	2 cut(s)	472, 527
BstSLI	GKGCMC	1 cut(s)	378
BstUI	CGCG	1 cut(s)	722
BstV1I	GCAGC	3 cut(s)	199, 446, 458
BstV2I	GAAGAC	2 cut(s)	27, 437
BstX2I	RGATCY	2 cut(s)	270, 772
BstXI	CCANNNNNNTGG	1 cut(s)	158
BstYI	RGATCY	2 cut(s)	270, 772
BsuRI	GGCC	5 cut(s)	48, 261, 300, 505, 717
BtsCI	GGATG	7 cut(s)	75, 95, 163, 431, 766, 787, 793
Cac8I	GCNNGC	3 cut(s)	383, 587, 638
CfoI	GCGC	4 cut(s)	286, 464, 724, 746
Cfr13I	GGNCC	4 cut(s)	47, 299, 398, 691
Csp6I	GTAC	3 cut(s)	265, 388, 727
CviAII	CATG	4 cut(s)	152, 355, 450, 833
CviQI	GTAC	3 cut(s)	265, 388, 727
DdeI	CTNAG	2 cut(s)	306, 753
DpnI	GATC	2 cut(s)	272, 774
DpnII	GATC	2 cut(s)	270, 772
EaeI	YGGCCR	1 cut(s)	715
Eco47I	GGWCC	2 cut(s)	398, 691
Eco57I	CTGAAG	2 cut(s)	502, 768
Eco72I	CACGTG	1 cut(s)	697
Eco88I	CYCGRG	1 cut(s)	493
EcoNI	CCTNNNNNAGG	1 cut(s)	255
EcoT22I	ATGCAT	2 cut(s)	6, 366
FaeI	CATG	4 cut(s)	155, 358, 453, 836
FaqI	GGGAC	3 cut(s)	411, 568, 821
FatI	CATG	4 cut(s)	151, 354, 449, 832
FauNDI	CATATG	1 cut(s)	366
Fnu4HI	GCNGC	9 cut(s)	188, 328, 460, 472, 506, 574, 583, 634, 658
FokI	GGATG	7 cut(s)	62, 82, 170, 418, 773, 794, 800
Fsp4HI	GCNGC	9 cut(s)	188, 328, 460, 472, 506, 574, 583, 634, 658
FspBI	CTAG	1 cut(s)	776
GlaI	GCGC	4 cut(s)	285, 463, 723, 745
GluI	GCNGC	9 cut(s)	188, 328, 460, 472, 506, 574, 583, 634, 658
GsaI	CCCAGC	1 cut(s)	118
GsuI	CTGGAG	2 cut(s)	264, 631
HaeIII	GGCC	5 cut(s)	48, 261, 300, 505, 717
HapII	CCGG	2 cut(s)	54, 391
HhaI	GCGC	4 cut(s)	286, 464, 724, 746
Hin1II	CATG	4 cut(s)	155, 358, 453, 836
Hin6I	GCGC	4 cut(s)	284, 462, 722, 744
HinP1I	GCGC	4 cut(s)	284, 462, 722, 744
HinfI	GANTC	3 cut(s)	26, 304, 404
HpaII	CCGG	2 cut(s)	54, 391
HphI	GGTGA	3 cut(s)	113, 610, 722
Hpy166II	GTNNAC	2 cut(s)	67, 238
Hpy188I	TCNGA	2 cut(s)	521, 664
Hpy188III	TCNNGA	2 cut(s)	204, 776
Hpy8I	GTNNAC	2 cut(s)	67, 238
Hpy99I	CGWCG	1 cut(s)	299
HpyAV	CCTTC	6 cut(s)	185, 219, 251, 285, 346, 388
HpyCH4III	ACNGT	1 cut(s)	169
HpyCH4IV	ACGT	1 cut(s)	696
HpyCH4V	TGCA	6 cut(s)	4, 358, 364, 474, 529, 651
HpyF10VI	GCNNNNNNNGC	7 cut(s)	324, 382, 468, 579, 582, 657, 728
HpyF3I	CTNAG	2 cut(s)	306, 753
HpySE526I	ACGT	1 cut(s)	696
Hsp92II	CATG	4 cut(s)	155, 358, 453, 836
HspAI	GCGC	4 cut(s)	284, 462, 722, 744
Kzo9I	GATC	2 cut(s)	270, 772
LmnI	GCTCC	2 cut(s)	253, 736
Lsp1109I	GCAGC	3 cut(s)	199, 446, 458
LweI	GCATC	4 cut(s)	13, 351, 660, 838
MaeI	CTAG	1 cut(s)	776
MaeII	ACGT	1 cut(s)	696
MaeIII	GTNAC	2 cut(s)	163, 452
MalI	GATC	2 cut(s)	272, 774
MboI	GATC	2 cut(s)	270, 772
MboII	GAAGA	7 cut(s)	32, 420, 437, 637, 776, 779, 782
MflI	RGATCY	2 cut(s)	270, 772
MhlI	GDGCHC	2 cut(s)	250, 378
MlsI	TGGCCA	1 cut(s)	717
MluCI	AATT	1 cut(s)	136
MluNI	TGGCCA	1 cut(s)	717
MlyI	GAGTC	2 cut(s)	20, 298
Mox20I	TGGCCA	1 cut(s)	717
Mph1103I	ATGCAT	2 cut(s)	6, 366
MroXI	GAANNNNTTC	1 cut(s)	515
MscI	TGGCCA	1 cut(s)	717
MseI	TTAA	2 cut(s)	855, 862
MslI	CAYNNNNRTG	3 cut(s)	156, 243, 359
Msp20I	TGGCCA	1 cut(s)	717
MspA1I	CMGCKG	1 cut(s)	508
MspI	CCGG	2 cut(s)	54, 391
MspR9I	CCNGG	1 cut(s)	54
MvnI	CGCG	1 cut(s)	722
MwoI	GCNNNNNNNGC	7 cut(s)	324, 382, 468, 579, 582, 657, 728
NciI	CCSGG	1 cut(s)	54
NdeI	CATATG	1 cut(s)	366
NdeII	GATC	2 cut(s)	270, 772
NlaIII	CATG	4 cut(s)	155, 358, 453, 836
NlaIV	GGNNCC	2 cut(s)	272, 399
NmeAIII	GCCGAG	2 cut(s)	24, 490
NmuCI	GTSAC	1 cut(s)	163
NsiI	ATGCAT	2 cut(s)	6, 366
NspI	RCATGY	1 cut(s)	358
OliI	CACNNNNGTG	1 cut(s)	243
PdmI	GAANNNNTTC	1 cut(s)	515
PfeI	GAWTC	1 cut(s)	404
PfoI	TCCNGGA	1 cut(s)	52
PkrI	GCNGC	9 cut(s)	189, 329, 461, 473, 507, 575, 584, 635, 659
PleI	GAGTC	2 cut(s)	20, 298
PmaCI	CACGTG	1 cut(s)	697
PmlI	CACGTG	1 cut(s)	697
PpsI	GAGTC	2 cut(s)	20, 298
Ppu21I	YACGTR	1 cut(s)	697
PspCI	CACGTG	1 cut(s)	697
PspFI	CCCAGC	1 cut(s)	114
PspN4I	GGNNCC	2 cut(s)	272, 399
PspPI	GGNCC	4 cut(s)	47, 299, 398, 691
PstI	CTGCAG	2 cut(s)	476, 531
PsuI	RGATCY	2 cut(s)	270, 772
RsaI	GTAC	3 cut(s)	266, 389, 728
RsaNI	GTAC	3 cut(s)	265, 388, 727
RseI	CAYNNNNRTG	3 cut(s)	156, 243, 359
SaqAI	TTAA	2 cut(s)	855, 862
SatI	GCNGC	9 cut(s)	188, 328, 460, 472, 506, 574, 583, 634, 658
Sau3AI	GATC	2 cut(s)	270, 772
Sau96I	GGNCC	4 cut(s)	47, 299, 398, 691
ScaI	AGTACT	1 cut(s)	266
SchI	GAGTC	2 cut(s)	20, 298
ScrFI	CCNGG	1 cut(s)	54
SduI	GDGCHC	2 cut(s)	250, 378
SetI	ASST	9 cut(s)	211, 338, 500, 642, 683, 699, 741, 754, 826
SfaNI	GCATC	4 cut(s)	13, 351, 660, 838
SfcI	CTRYAG	2 cut(s)	472, 527
SinI	GGWCC	2 cut(s)	398, 691
SmiMI	CAYNNNNRTG	3 cut(s)	156, 243, 359
SmlI	CTYRAG	1 cut(s)	686
SmoI	CTYRAG	1 cut(s)	686
Sse9I	AATT	1 cut(s)	136
SsiI	CCGC	7 cut(s)	327, 506, 574, 582, 596, 633, 657
SspMI	CTAG	1 cut(s)	776
StyD4I	CCNGG	1 cut(s)	52
TaaI	ACNGT	1 cut(s)	169
TaiI	ACGT	1 cut(s)	699
TaqI	TCGA	1 cut(s)	205
TasI	AATT	1 cut(s)	136
TatI	WGTACW	1 cut(s)	264
TauI	GCSGC	6 cut(s)	330, 508, 576, 585, 636, 660
TfiI	GAWTC	1 cut(s)	404
Tru1I	TTAA	2 cut(s)	855, 862
Tru9I	TTAA	2 cut(s)	855, 862
TseFI	GTSAC	1 cut(s)	163
TseI	GCWGC	3 cut(s)	187, 459, 471
Tsp45I	GTSAC	1 cut(s)	163
TspDTI	ATGAA	3 cut(s)	33, 420, 777
TspGWI	ACGGA	1 cut(s)	431
VpaK11BI	GGWCC	2 cut(s)	398, 691
XagI	CCTNNNNNAGG	1 cut(s)	255
XbaI	TCTAGA	1 cut(s)	775
XceI	RCATGY	1 cut(s)	358
XmnI	GAANNNNTTC	1 cut(s)	515
XspI	CTAG	1 cut(s)	776
ZrmI	AGTACT	1 cut(s)	266
Zsp2I	ATGCAT	2 cut(s)	6, 366

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.