Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007828

Physical Location & Seq

Genomic Coordinates Reverse (-)

4576873 .. 4578369

Gene Structure 1497 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G13360.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

ATGGAGAAGAAGTTGTTGGATATAACTCGGACTGACTCGGCTGAGAAAAAGCGAGTCAGAGACGAGTCATTCGACGAAGCGGTTCTTGACTCGCCGGAGGTGAAGAGGTTGAGAGATGATTTATTCGATGTCCTGGATGACTCGGATCCTGAACCAGTGAGTCAAGATCTCGACTCGGTTATGAAAAGTTTCGAAGACGAGTTATCAACGGTCACCACCACGACGGCGCAAGGTTCCTCTACCGCCGGCGAAACTCAGCCTGATCTCGGATATCTTCTTGAAGCTTCCGATGATGAGCTTGGTTTACCACCACCTCCATCGATTTCTCCGGTTCCCGTCGCGAAGGAGGAGGTAACGACGGAGACGGTAACGGATTTGGTACGAGCGTCTTCTGATTCGTCAGGAATCGACGAGATTTGGGGATTTGAAGATCACGTGTCGAATTACGGTGGTTTAGATTTTGGTTCCGGCGTCGGAGATGGTGGAGATTACGTGGCTGTTGAGGGGTTGTTTGAATTTTCCGACGATTGTTTTGACTCCGGCGATCTGTTTTCGTGGCGGTCGGAGTCGTTACCGGCGGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

194

Amino Acids

21.04

Weight (kDa)

4.05

Isoelectric Point (pI)

52.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007828)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13360 AT1G13360 AT1G13360 AT3G25870
fragaria_vesca	FvH4_4g27540
malus_domestica	MD13G1042900.v1.1 MD16G1043800.v1.1
prunus_persica	Prupe.1G309700_v2.0.a1 Prupe.1G309700_v2.0.a1
pyrus_communis	pycom13g03770 pycom16g03800
rosa_chinensis	RchiOBHm_Chr4g0435381
rosa_laevigata	RLG00000006597
rosa_multiflora	Rmu_sc0001940.1_g000017
rosa_roxburghii	Rroxscaffold_1G00032220
rosa_rugosa	Rorug04G0284500
rosa_samantha	Rh2CG355700 Rh4BG348500 Rh4CG363100 Rh4CG429500 Rh4DG228200 Rh4DG342700 Rh4DG409500
rosa_wichuraiana	Rw4G029670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	341
AciI	CCGC	4 cut(s)	80, 243, 559, 578
AclWI	GGATC	2 cut(s)	140, 153
AcsI	RAATTY	1 cut(s)	515
AcvI	CACGTG	1 cut(s)	436
AcyI	GRCGYC	1 cut(s)	471
AfaI	GTAC	1 cut(s)	381
AfiI	CCNNNNNNNGG	1 cut(s)	266
AflIII	ACRYGT	1 cut(s)	435
AgsI	TTSAA	3 cut(s)	281, 428, 515
AjnI	CCWGG	1 cut(s)	132
AjuI	GAANNNNNNNTTGG	1 cut(s)	31
AluBI	AGCT	2 cut(s)	284, 298
AluI	AGCT	2 cut(s)	284, 298
Alw26I	GTCTC	2 cut(s)	54, 356
AlwI	GGATC	2 cut(s)	140, 153
ApoI	RAATTY	1 cut(s)	515
ArsI	GACNNNNNNTTYG	4 cut(s)	53, 85, 515, 547
Asp700I	GAANNNNTTC	2 cut(s)	81, 188
AspLEI	GCGC	1 cut(s)	229
AsuHPI	GGTGA	2 cut(s)	112, 205
AsuII	TTCGAA	1 cut(s)	192
BaeI	ACNNNNGTAYC	2 cut(s)	371, 404
BamHI	GGATCC	1 cut(s)	145
BbrPI	CACGTG	1 cut(s)	436
BbsI	GAAGAC	2 cut(s)	201, 381
BccI	CCATC	2 cut(s)	325, 473
BceAI	ACGGC	1 cut(s)	240
BciT130I	CCWGG	1 cut(s)	134
BcoDI	GTCTC	2 cut(s)	54, 356
BglII	AGATCT	1 cut(s)	166
Bme1390I	CCNGG	1 cut(s)	134
BmiI	GGNNCC	4 cut(s)	147, 235, 333, 466
BmrFI	CCNGG	1 cut(s)	134
BpiI	GAAGAC	2 cut(s)	201, 381
Bpu14I	TTCGAA	1 cut(s)	192
Bsa29I	ATCGAT	1 cut(s)	320
BsaAI	YACGTR	2 cut(s)	436, 493
BsaHI	GRCGYC	1 cut(s)	471
BsaWI	WCCGGW	1 cut(s)	328
BsaXI	ACNNNNNCTCC	3 cut(s)	26, 477, 507
Bsc4I	CCNNNNNNNGG	1 cut(s)	266
Bse118I	RCCGGY	2 cut(s)	245, 574
Bse1I	ACTGG	1 cut(s)	155
BseBI	CCWGG	1 cut(s)	134
BseCI	ATCGAT	1 cut(s)	320
BseGI	GGATG	1 cut(s)	142
BseLI	CCNNNNNNNGG	1 cut(s)	266
BseMII	CTCAG	2 cut(s)	33, 269
BseNI	ACTGG	1 cut(s)	155
BseRI	GAGGAG	1 cut(s)	362
Bsh1236I	CGCG	1 cut(s)	341
Bsh1285I	CGRYCG	1 cut(s)	563
BshVI	ATCGAT	1 cut(s)	320
BsiEI	CGRYCG	1 cut(s)	563
BsiSI	CCGG	6 cut(s)	95, 246, 329, 468, 540, 575
BslI	CCNNNNNNNGG	1 cut(s)	266
BsmAI	GTCTC	2 cut(s)	54, 356
BsmBI	CGTCTC	2 cut(s)	54, 356
Bsp119I	TTCGAA	1 cut(s)	192
Bsp143I	GATC	5 cut(s)	145, 166, 262, 430, 544
Bsp68I	TCGCGA	1 cut(s)	341
BspACI	CCGC	4 cut(s)	80, 243, 559, 578
BspCNI	CTCAG	2 cut(s)	34, 268
BspDI	ATCGAT	1 cut(s)	320
BspFNI	CGCG	1 cut(s)	341
BspLI	GGNNCC	4 cut(s)	147, 235, 333, 466
BspPI	GGATC	2 cut(s)	140, 153
BspT104I	TTCGAA	1 cut(s)	192
BsrFI	RCCGGY	2 cut(s)	245, 574
BsrI	ACTGG	1 cut(s)	155
BssAI	RCCGGY	2 cut(s)	245, 574
BssMI	GATC	5 cut(s)	145, 166, 262, 430, 544
BssNI	GRCGYC	1 cut(s)	471
Bst2UI	CCWGG	1 cut(s)	134
Bst4CI	ACNGT	3 cut(s)	211, 367, 449
Bst6I	CTCTTC	1 cut(s)	98
BstACI	GRCGYC	1 cut(s)	471
BstBAI	YACGTR	2 cut(s)	436, 493
BstBI	TTCGAA	1 cut(s)	192
BstC8I	GCNNGC	1 cut(s)	247
BstDEI	CTNAG	2 cut(s)	42, 255
BstEII	GGTNACC	1 cut(s)	211
BstF5I	GGATG	1 cut(s)	142
BstFNI	CGCG	1 cut(s)	341
BstHHI	GCGC	1 cut(s)	229
BstKTI	GATC	5 cut(s)	148, 169, 265, 433, 547
BstMAI	GTCTC	2 cut(s)	54, 356
BstMBI	GATC	5 cut(s)	145, 166, 262, 430, 544
BstMCI	CGRYCG	1 cut(s)	563
BstNI	CCWGG	1 cut(s)	134
BstPI	GGTNACC	1 cut(s)	211
BstSCI	CCNGG	1 cut(s)	132
BstUI	CGCG	1 cut(s)	341
BstV2I	GAAGAC	2 cut(s)	201, 381
BstX2I	RGATCY	2 cut(s)	145, 166
BstYI	RGATCY	2 cut(s)	145, 166
Bsu15I	ATCGAT	1 cut(s)	320
BsuTUI	ATCGAT	1 cut(s)	320
BtsCI	GGATG	1 cut(s)	142
BtsIMutI	CAGTG	1 cut(s)	162
BtuMI	TCGCGA	1 cut(s)	341
Cac8I	GCNNGC	1 cut(s)	247
CfoI	GCGC	1 cut(s)	229
Cfr10I	RCCGGY	2 cut(s)	245, 574
ClaI	ATCGAT	1 cut(s)	320
CseI	GACGC	2 cut(s)	375, 460
Csp6I	GTAC	1 cut(s)	380
CviJI	RGCY	5 cut(s)	41, 259, 284, 298, 497
CviKI_1	RGCY	5 cut(s)	41, 259, 284, 298, 497
CviQI	GTAC	1 cut(s)	380
DdeI	CTNAG	2 cut(s)	42, 255
DpnI	GATC	5 cut(s)	147, 168, 264, 432, 546
DpnII	GATC	5 cut(s)	145, 166, 262, 430, 544
Eam1104I	CTCTTC	1 cut(s)	98
EarI	CTCTTC	1 cut(s)	98
Eco32I	GATATC	1 cut(s)	272
Eco72I	CACGTG	1 cut(s)	436
Eco91I	GGTNACC	1 cut(s)	211
EcoO65I	GGTNACC	1 cut(s)	211
EcoRII	CCWGG	1 cut(s)	132
EcoRV	GATATC	1 cut(s)	272
Esp3I	CGTCTC	2 cut(s)	54, 356
FaiI	YATR	2 cut(s)	23, 182
FalI	AAGNNNNNCTT	2 cut(s)	69, 101
FokI	GGATG	1 cut(s)	149
GlaI	GCGC	1 cut(s)	228
HapII	CCGG	6 cut(s)	95, 246, 329, 468, 540, 575
HgaI	GACGC	2 cut(s)	375, 460
HhaI	GCGC	1 cut(s)	229
Hin1I	GRCGYC	1 cut(s)	471
Hin6I	GCGC	1 cut(s)	227
HinP1I	GCGC	1 cut(s)	227
HindIII	AAGCTT	1 cut(s)	282
HpaII	CCGG	6 cut(s)	95, 246, 329, 468, 540, 575
HphI	GGTGA	2 cut(s)	112, 205
Hpy166II	GTNNAC	1 cut(s)	305
Hpy188I	TCNGA	9 cut(s)	30, 59, 145, 269, 289, 394, 476, 523, 565
Hpy188III	TCNNGA	7 cut(s)	86, 149, 164, 170, 278, 340, 402
Hpy8I	GTNNAC	1 cut(s)	305
Hpy99I	CGWCG	7 cut(s)	77, 226, 341, 361, 413, 476, 527
HpyAV	CCTTC	1 cut(s)	337
HpyCH4III	ACNGT	3 cut(s)	211, 367, 449
HpyCH4IV	ACGT	2 cut(s)	435, 492
HpyF3I	CTNAG	2 cut(s)	42, 255
HpySE526I	ACGT	2 cut(s)	435, 492
Hsp92I	GRCGYC	1 cut(s)	471
HspAI	GCGC	1 cut(s)	227
KroI	GCCGGC	1 cut(s)	245
KroNI	GCCGGC	1 cut(s)	247
Kzo9I	GATC	5 cut(s)	145, 166, 262, 430, 544
MaeII	ACGT	2 cut(s)	435, 492
MaeIII	GTNAC	4 cut(s)	211, 352, 367, 570
MalI	GATC	5 cut(s)	147, 168, 264, 432, 546
MboI	GATC	5 cut(s)	145, 166, 262, 430, 544
MboII	GAAGA	6 cut(s)	19, 115, 206, 266, 381, 440
MflI	RGATCY	2 cut(s)	145, 166
MluCI	AATT	2 cut(s)	442, 515
MlyI	GAGTC	9 cut(s)	29, 63, 74, 83, 134, 167, 169, 530, 575
MmeI	TCCRAC	3 cut(s)	454, 543, 546
MnlI	CCTC	7 cut(s)	91, 99, 247, 324, 340, 343, 496
MreI	CGCCGGCG	1 cut(s)	245
MroNI	GCCGGC	1 cut(s)	245
MroXI	GAANNNNTTC	2 cut(s)	81, 188
MspI	CCGG	6 cut(s)	95, 246, 329, 468, 540, 575
MspR9I	CCNGG	1 cut(s)	134
MvaI	CCWGG	1 cut(s)	134
MvnI	CGCG	1 cut(s)	341
NaeI	GCCGGC	1 cut(s)	247
NdeII	GATC	5 cut(s)	145, 166, 262, 430, 544
NgoMIV	GCCGGC	1 cut(s)	245
NlaIV	GGNNCC	4 cut(s)	147, 235, 333, 466
NmeAIII	GCCGAG	1 cut(s)	17
NmuCI	GTSAC	1 cut(s)	211
NruI	TCGCGA	1 cut(s)	341
NspV	TTCGAA	1 cut(s)	192
PcsI	WCGNNNNNNNCGW	1 cut(s)	69
PdiI	GCCGGC	1 cut(s)	247
PdmI	GAANNNNTTC	2 cut(s)	81, 188
PfeI	GAWTC	2 cut(s)	395, 405
PfoI	TCCNGGA	1 cut(s)	132
PleI	GAGTC	9 cut(s)	29, 62, 73, 83, 134, 167, 168, 530, 574
PmaCI	CACGTG	1 cut(s)	436
PmlI	CACGTG	1 cut(s)	436
PpsI	GAGTC	9 cut(s)	29, 62, 73, 83, 134, 167, 168, 530, 574
Ppu21I	YACGTR	2 cut(s)	436, 493
Psp6I	CCWGG	1 cut(s)	132
PspCI	CACGTG	1 cut(s)	436
PspEI	GGTNACC	1 cut(s)	211
PspGI	CCWGG	1 cut(s)	132
PspN4I	GGNNCC	4 cut(s)	147, 235, 333, 466
PsuI	RGATCY	2 cut(s)	145, 166
RruI	TCGCGA	1 cut(s)	341
RsaI	GTAC	1 cut(s)	381
RsaNI	GTAC	1 cut(s)	380
Sau3AI	GATC	5 cut(s)	145, 166, 262, 430, 544
SchI	GAGTC	9 cut(s)	29, 63, 74, 83, 134, 167, 169, 530, 575
ScrFI	CCNGG	1 cut(s)	134
SetI	ASST	9 cut(s)	102, 110, 235, 286, 300, 316, 354, 438, 495
SfuI	TTCGAA	1 cut(s)	192
SgrAI	CRCCGGYG	1 cut(s)	245
Sse9I	AATT	2 cut(s)	442, 515
SsiI	CCGC	4 cut(s)	80, 243, 559, 578
StyD4I	CCNGG	1 cut(s)	132
TaaI	ACNGT	3 cut(s)	211, 367, 449
TaiI	ACGT	2 cut(s)	438, 495
TaqI	TCGA	7 cut(s)	72, 126, 171, 192, 320, 408, 440
TasI	AATT	2 cut(s)	442, 515
TfiI	GAWTC	2 cut(s)	395, 405
TscAI	CASTG	1 cut(s)	162
TseFI	GTSAC	1 cut(s)	211
Tsp45I	GTSAC	1 cut(s)	211
TspDTI	ATGAA	1 cut(s)	197
TspGWI	ACGGA	2 cut(s)	374, 386
TspRI	CASTG	1 cut(s)	162
XapI	RAATTY	1 cut(s)	515
XmnI	GAANNNNTTC	2 cut(s)	81, 188

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.