Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0007828

Physical Location & Seq

Genomic Coordinates Forward (+)

3004401 .. 3004949

Gene Structure 549 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1042900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ATGGAGGACCACACCCCAACTAACAAGAAGCGGGTCCGAGACAACTCGGACGACTCGGTTCACGACTCGGCCGAGGTGAAGCGACTCAGGGAAGACCTACTGGGTTTCCTTGACGACTCGGACGCCGATCCCACGACTCAGGACCTCGACTCGGTCATGAAAAGCTTCGAGGAAGAGATAGCAGCCGCAACCACTTCTTGCCAGTCGTCGCCGCGTCCGGCATCGGAGACTCTGCTGGCTCCGGTGCCGGTGGTTGATCTGACGTCGGAATCTGGCGAGTCCAAACCCGACCTTGGCTACCTTCTAGAAGCTTCGGACGACGAGCTGGGCCTGCCCCCGCCGGAGAACTTCAAAGAGGAGGCGGCGAAAGGCGGGGAGAGCGAGTTGGTCCGAGTTCCGTCCGACTCGTCCGTAGCCGACGAGTTATGGCAGTTCGACGATCCCCCTCCGAGTACGCTTGACGGGCTGTTCGGAAACGACGATGTGTATTTTGACTCGGCTGATTACGGCGAGTTTTCGTGGCGTTTCGAAACACTGCCGGCGCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

183

Amino Acids

19.96

Weight (kDa)

4.05

Isoelectric Point (pI)

56.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007828)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13360 AT1G13360 AT1G13360 AT3G25870
fragaria_vesca	FvH4_4g27540
malus_domestica	MD13G1042900.v1.1 MD16G1043800.v1.1
prunus_persica	Prupe.1G309700_v2.0.a1 Prupe.1G309700_v2.0.a1
pyrus_communis	pycom13g03770 pycom16g03800
rosa_chinensis	RchiOBHm_Chr4g0435381
rosa_laevigata	RLG00000006597
rosa_multiflora	Rmu_sc0001940.1_g000017
rosa_roxburghii	Rroxscaffold_1G00032220
rosa_rugosa	Rorug04G0284500
rosa_samantha	Rh2CG355700 Rh4BG348500 Rh4CG363100 Rh4CG429500 Rh4DG228200 Rh4DG342700 Rh4DG409500
rosa_wichuraiana	Rw4G029670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	266
AccB1I	GGYRCC	1 cut(s)	244
AccII	CGCG	1 cut(s)	214
AciI	CCGC	6 cut(s)	31, 186, 212, 338, 362, 372
AclWI	GGATC	2 cut(s)	122, 434
AcoI	YGGCCR	1 cut(s)	69
AcyI	GRCGYC	2 cut(s)	123, 263
AfaI	GTAC	1 cut(s)	454
AfiI	CCNNNNNNNGG	2 cut(s)	151, 293
AgsI	TTSAA	1 cut(s)	352
AluBI	AGCT	3 cut(s)	165, 311, 325
AluI	AGCT	3 cut(s)	165, 311, 325
Alw26I	GTCTC	2 cut(s)	33, 221
AlwI	GGATC	2 cut(s)	122, 434
AoxI	GGCC	2 cut(s)	69, 328
ApeKI	GCWGC	1 cut(s)	182
ArsI	GACNNNNNNTTYG	2 cut(s)	452, 484
Asp700I	GAANNNNTTC	1 cut(s)	164
AspLEI	GCGC	1 cut(s)	544
AspS9I	GGNCC	5 cut(s)	7, 34, 142, 328, 388
AsuHPI	GGTGA	1 cut(s)	88
AsuII	TTCGAA	1 cut(s)	528
AvaII	GGWCC	4 cut(s)	7, 34, 142, 388
BanI	GGYRCC	1 cut(s)	244
BbsI	GAAGAC	1 cut(s)	99
BbvI	GCAGC	1 cut(s)	194
BceAI	ACGGC	1 cut(s)	523
BcoDI	GTCTC	2 cut(s)	33, 221
BfaI	CTAG	1 cut(s)	305
BisI	GCNGC	4 cut(s)	183, 186, 212, 363
BlsI	GCNGC	4 cut(s)	184, 187, 213, 364
Bme18I	GGWCC	4 cut(s)	7, 34, 142, 388
BmgT120I	GGNCC	5 cut(s)	7, 34, 142, 328, 388
BmiI	GGNNCC	3 cut(s)	35, 240, 246
BmrI	ACTGGG	1 cut(s)	110
BmsI	GCATC	1 cut(s)	230
BmuI	ACTGGG	1 cut(s)	110
BpiI	GAAGAC	1 cut(s)	99
Bpu14I	TTCGAA	1 cut(s)	528
BsaHI	GRCGYC	2 cut(s)	123, 263
BsaJI	CCNNGG	2 cut(s)	72, 292
BsaWI	WCCGGW	1 cut(s)	241
BsaXI	ACNNNNNCTCC	2 cut(s)	368, 398
Bsc4I	CCNNNNNNNGG	2 cut(s)	151, 293
Bse118I	RCCGGY	2 cut(s)	247, 538
Bse1I	ACTGG	2 cut(s)	105, 202
BseDI	CCNNGG	2 cut(s)	72, 292
BseLI	CCNNNNNNNGG	2 cut(s)	151, 293
BseMII	CTCAG	2 cut(s)	100, 152
BseNI	ACTGG	2 cut(s)	105, 202
BseRI	GAGGAG	1 cut(s)	371
BseX3I	CGGCCG	1 cut(s)	69
BseXI	GCAGC	1 cut(s)	194
BseYI	CCCAGC	1 cut(s)	325
Bsh1236I	CGCG	1 cut(s)	214
Bsh1285I	CGRYCG	1 cut(s)	72
BshFI	GGCC	2 cut(s)	71, 330
BshNI	GGYRCC	1 cut(s)	244
BsiEI	CGRYCG	1 cut(s)	72
BsiSI	CCGG	5 cut(s)	218, 242, 248, 341, 539
BslI	CCNNNNNNNGG	2 cut(s)	151, 293
BsmAI	GTCTC	2 cut(s)	33, 221
BsnI	GGCC	2 cut(s)	71, 330
Bsp119I	TTCGAA	1 cut(s)	528
Bsp143I	GATC	3 cut(s)	127, 256, 439
BspACI	CCGC	6 cut(s)	31, 186, 212, 338, 362, 372
BspANI	GGCC	2 cut(s)	71, 330
BspCNI	CTCAG	2 cut(s)	99, 151
BspFNI	CGCG	1 cut(s)	214
BspHI	TCATGA	1 cut(s)	156
BspLI	GGNNCC	3 cut(s)	35, 240, 246
BspPI	GGATC	2 cut(s)	122, 434
BspT104I	TTCGAA	1 cut(s)	528
BspT107I	GGYRCC	1 cut(s)	244
BsrFI	RCCGGY	2 cut(s)	247, 538
BsrI	ACTGG	2 cut(s)	105, 202
BssAI	RCCGGY	2 cut(s)	247, 538
BssECI	CCNNGG	2 cut(s)	72, 292
BssMI	GATC	3 cut(s)	127, 256, 439
BssNI	GRCGYC	2 cut(s)	123, 263
BssT1I	CCWWGG	1 cut(s)	292
Bst6I	CTCTTC	1 cut(s)	168
BstACI	GRCGYC	2 cut(s)	123, 263
BstBI	TTCGAA	1 cut(s)	528
BstC8I	GCNNGC	3 cut(s)	237, 332, 540
BstDEI	CTNAG	2 cut(s)	86, 138
BstFNI	CGCG	1 cut(s)	214
BstHHI	GCGC	1 cut(s)	544
BstKTI	GATC	3 cut(s)	130, 259, 442
BstMAI	GTCTC	2 cut(s)	33, 221
BstMBI	GATC	3 cut(s)	127, 256, 439
BstMCI	CGRYCG	1 cut(s)	72
BstMWI	GCNNNNNNNGC	3 cut(s)	331, 378, 463
BstUI	CGCG	1 cut(s)	214
BstV1I	GCAGC	1 cut(s)	194
BstV2I	GAAGAC	1 cut(s)	99
BstZI	CGGCCG	1 cut(s)	69
BsuRI	GGCC	2 cut(s)	71, 330
BtsI	GCAGTG	1 cut(s)	533
BtsIMutI	CAGTG	1 cut(s)	533
Cac8I	GCNNGC	3 cut(s)	237, 332, 540
CciI	TCATGA	1 cut(s)	156
CfoI	GCGC	1 cut(s)	544
Cfr10I	RCCGGY	2 cut(s)	247, 538
Cfr13I	GGNCC	5 cut(s)	7, 34, 142, 328, 388
CseI	GACGC	2 cut(s)	131, 203
Csp6I	GTAC	1 cut(s)	453
CviAII	CATG	1 cut(s)	157
CviQI	GTAC	1 cut(s)	453
DdeI	CTNAG	2 cut(s)	86, 138
DpnI	GATC	3 cut(s)	129, 258, 441
DpnII	GATC	3 cut(s)	127, 256, 439
EaeI	YGGCCR	1 cut(s)	69
EagI	CGGCCG	1 cut(s)	69
Eam1104I	CTCTTC	1 cut(s)	168
EarI	CTCTTC	1 cut(s)	168
EclXI	CGGCCG	1 cut(s)	69
Eco130I	CCWWGG	1 cut(s)	292
Eco47I	GGWCC	4 cut(s)	7, 34, 142, 388
Eco52I	CGGCCG	1 cut(s)	69
EcoO109I	RGGNCCY	1 cut(s)	142
EcoT14I	CCWWGG	1 cut(s)	292
ErhI	CCWWGG	1 cut(s)	292
FaeI	CATG	1 cut(s)	160
FaiI	YATR	2 cut(s)	158, 427
FatI	CATG	1 cut(s)	156
FauI	CCCGC	3 cut(s)	24, 345, 365
Fnu4HI	GCNGC	4 cut(s)	183, 186, 212, 363
Fsp4HI	GCNGC	4 cut(s)	183, 186, 212, 363
FspBI	CTAG	1 cut(s)	305
GlaI	GCGC	1 cut(s)	543
GluI	GCNGC	4 cut(s)	183, 186, 212, 363
GsaI	CCCAGC	1 cut(s)	329
HaeIII	GGCC	2 cut(s)	71, 330
HapII	CCGG	5 cut(s)	218, 242, 248, 341, 539
HgaI	GACGC	2 cut(s)	131, 203
HhaI	GCGC	1 cut(s)	544
Hin1I	GRCGYC	2 cut(s)	123, 263
Hin1II	CATG	1 cut(s)	160
Hin6I	GCGC	1 cut(s)	542
HinP1I	GCGC	1 cut(s)	542
HindIII	AAGCTT	2 cut(s)	163, 309
HpaII	CCGG	5 cut(s)	218, 242, 248, 341, 539
HphI	GGTGA	1 cut(s)	88
Hpy166II	GTNNAC	1 cut(s)	61
Hpy188III	TCNNGA	4 cut(s)	62, 140, 157, 305
Hpy8I	GTNNAC	1 cut(s)	61
Hpy99I	CGWCG	6 cut(s)	211, 268, 323, 422, 440, 482
HpyAV	CCTTC	1 cut(s)	311
HpyCH4IV	ACGT	1 cut(s)	263
HpyF10VI	GCNNNNNNNGC	3 cut(s)	331, 378, 463
HpyF3I	CTNAG	2 cut(s)	86, 138
HpySE526I	ACGT	1 cut(s)	263
Hsp92I	GRCGYC	2 cut(s)	123, 263
Hsp92II	CATG	1 cut(s)	160
HspAI	GCGC	1 cut(s)	542
KroI	GCCGGC	1 cut(s)	538
KroNI	GCCGGC	1 cut(s)	540
Kzo9I	GATC	3 cut(s)	127, 256, 439
LmnI	GCTCC	1 cut(s)	244
Lsp1109I	GCAGC	1 cut(s)	194
LweI	GCATC	1 cut(s)	230
MaeI	CTAG	1 cut(s)	305
MaeII	ACGT	1 cut(s)	263
MalI	GATC	3 cut(s)	129, 258, 441
MboI	GATC	3 cut(s)	127, 256, 439
MboII	GAAGA	2 cut(s)	104, 185
MmeI	TCCRAC	2 cut(s)	246, 426
MnlI	CCTC	6 cut(s)	67, 155, 163, 349, 352, 456
MroNI	GCCGGC	1 cut(s)	538
MroXI	GAANNNNTTC	1 cut(s)	164
MspI	CCGG	5 cut(s)	218, 242, 248, 341, 539
MvnI	CGCG	1 cut(s)	214
MwoI	GCNNNNNNNGC	3 cut(s)	331, 378, 463
NaeI	GCCGGC	1 cut(s)	540
NdeII	GATC	3 cut(s)	127, 256, 439
NgoMIV	GCCGGC	1 cut(s)	538
NlaIII	CATG	1 cut(s)	160
NlaIV	GGNNCC	3 cut(s)	35, 240, 246
NmeAIII	GCCGAG	3 cut(s)	47, 97, 476
NspV	TTCGAA	1 cut(s)	528
PagI	TCATGA	1 cut(s)	156
PcsI	WCGNNNNNNNCGW	2 cut(s)	69, 477
PdiI	GCCGGC	1 cut(s)	540
PdmI	GAANNNNTTC	1 cut(s)	164
PfeI	GAWTC	1 cut(s)	269
PflFI	GACNNNGTC	1 cut(s)	152
PkrI	GCNGC	4 cut(s)	184, 187, 213, 364
PpuMI	RGGWCCY	1 cut(s)	142
Psp5II	RGGWCCY	1 cut(s)	142
PspFI	CCCAGC	1 cut(s)	325
PspN4I	GGNNCC	3 cut(s)	35, 240, 246
PspPI	GGNCC	5 cut(s)	7, 34, 142, 328, 388
PspPPI	RGGWCCY	1 cut(s)	142
PsyI	GACNNNGTC	1 cut(s)	152
RsaI	GTAC	1 cut(s)	454
RsaNI	GTAC	1 cut(s)	453
SatI	GCNGC	4 cut(s)	183, 186, 212, 363
Sau3AI	GATC	3 cut(s)	127, 256, 439
Sau96I	GGNCC	5 cut(s)	7, 34, 142, 328, 388
SetI	ASST	9 cut(s)	78, 99, 147, 167, 266, 294, 303, 313, 327
SfaNI	GCATC	1 cut(s)	230
SfuI	TTCGAA	1 cut(s)	528
SinI	GGWCC	4 cut(s)	7, 34, 142, 388
SsiI	CCGC	6 cut(s)	31, 186, 212, 338, 362, 372
SspMI	CTAG	1 cut(s)	305
StyI	CCWWGG	1 cut(s)	292
TaiI	ACGT	1 cut(s)	266
TaqI	TCGA	4 cut(s)	147, 168, 435, 528
TaqII	GACCGA	1 cut(s)	142
TauI	GCSGC	3 cut(s)	188, 214, 365
TfiI	GAWTC	1 cut(s)	269
TscAI	CASTG	1 cut(s)	540
TseI	GCWGC	1 cut(s)	182
TspDTI	ATGAA	1 cut(s)	173
TspGWI	ACGGA	2 cut(s)	387, 400
TspRI	CASTG	1 cut(s)	540
Tth111I	GACNNNGTC	1 cut(s)	152
VpaK11BI	GGWCC	4 cut(s)	7, 34, 142, 388
XbaI	TCTAGA	1 cut(s)	304
XmnI	GAANNNNTTC	1 cut(s)	164
XspI	CTAG	1 cut(s)	305
ZraI	GACGTC	1 cut(s)	264

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.