Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0007828

Physical Location & Seq

Genomic Coordinates Forward (+)

48200494 .. 48200865

Gene Structure 372 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG355700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 372 bp

ATGCCATTATCAGATCAAAACTTTTCTCATCTCTCATCTCTCATCTCTCATAAGAAAGGCTTCGAGGAAGAGATCTCCAATTCTTGTTCAACGTCGCCTCGTCCAACTCCGAACACTGCCACAGCTTCGGTGCCAGTGGTAGATCTCACATCAGATTTCGGCGAGTCCAACTCGAAGCTCTGGAAAATGAAAAACCCGCCGAAGCAGCTATACGCTTTCGTTCGTACTCCGTCCACGGTGCACGATCAGACGAAGCACAACCACAGGAGTGACAGCGACGGTGCGAAGAACCAAACGCGACAGGTTTCCAGGCAGGAGGTGGTCGGAGAGAAGAATTCCGGTCAGATCTTGATTCGGGTCGCGGGTCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

123

Amino Acids

13.6

Weight (kDa)

9.21

Isoelectric Point (pI)

52.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007828)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13360 AT1G13360 AT1G13360 AT3G25870
fragaria_vesca	FvH4_4g27540
malus_domestica	MD13G1042900.v1.1 MD16G1043800.v1.1
prunus_persica	Prupe.1G309700_v2.0.a1 Prupe.1G309700_v2.0.a1
pyrus_communis	pycom13g03770 pycom16g03800
rosa_chinensis	RchiOBHm_Chr4g0435381
rosa_laevigata	RLG00000006597
rosa_multiflora	Rmu_sc0001940.1_g000017
rosa_roxburghii	Rroxscaffold_1G00032220
rosa_rugosa	Rorug04G0284500
rosa_samantha	Rh2CG355700 Rh4BG348500 Rh4CG363100 Rh4CG429500 Rh4DG228200 Rh4DG342700 Rh4DG409500
rosa_wichuraiana	Rw4G029670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	130
AccII	CGCG	2 cut(s)	298, 362
AciI	CCGC	2 cut(s)	197, 362
AcsI	RAATTY	1 cut(s)	334
AfaI	GTAC	1 cut(s)	226
AgsI	TTSAA	1 cut(s)	90
AjnI	CCWGG	1 cut(s)	308
AleI	CACNNNNGTG	1 cut(s)	267
AluBI	AGCT	3 cut(s)	125, 178, 208
AluI	AGCT	3 cut(s)	125, 178, 208
Alw21I	GWGCWC	1 cut(s)	243
Alw44I	GTGCAC	1 cut(s)	239
ApaLI	GTGCAC	1 cut(s)	239
ApeKI	GCWGC	1 cut(s)	205
ApoI	RAATTY	1 cut(s)	334
Asp700I	GAANNNNTTC	1 cut(s)	59
BaeGI	GKGCMC	1 cut(s)	243
BanI	GGYRCC	1 cut(s)	130
BarI	GAAGNNNNNNTAC	2 cut(s)	194, 226
Bbv12I	GWGCWC	1 cut(s)	243
BbvI	GCAGC	1 cut(s)	217
BciT130I	CCWGG	1 cut(s)	310
BglII	AGATCT	3 cut(s)	72, 142, 345
BisI	GCNGC	1 cut(s)	206
BlsI	GCNGC	1 cut(s)	207
Bme1390I	CCNGG	1 cut(s)	310
BmiI	GGNNCC	1 cut(s)	132
BmrFI	CCNGG	1 cut(s)	310
BplI	GAGNNNNNCTC	2 cut(s)	155, 187
BsaJI	CCNNGG	1 cut(s)	234
BsaWI	WCCGGW	1 cut(s)	338
Bse1I	ACTGG	1 cut(s)	134
BseBI	CCWGG	1 cut(s)	310
BseDI	CCNNGG	1 cut(s)	234
BseNI	ACTGG	1 cut(s)	134
BseSI	GKGCMC	1 cut(s)	243
BseXI	GCAGC	1 cut(s)	217
Bsh1236I	CGCG	2 cut(s)	298, 362
BshNI	GGYRCC	1 cut(s)	130
BsiHKAI	GWGCWC	1 cut(s)	243
BsiSI	CCGG	1 cut(s)	339
Bsp1286I	GDGCHC	1 cut(s)	243
Bsp143I	GATC	5 cut(s)	13, 72, 142, 244, 345
BspACI	CCGC	2 cut(s)	197, 362
BspFNI	CGCG	2 cut(s)	298, 362
BspLI	GGNNCC	1 cut(s)	132
BspT107I	GGYRCC	1 cut(s)	130
BsrI	ACTGG	1 cut(s)	134
BssECI	CCNNGG	1 cut(s)	234
BssMI	GATC	5 cut(s)	13, 72, 142, 244, 345
Bst2UI	CCWGG	1 cut(s)	310
Bst4CI	ACNGT	2 cut(s)	238, 281
Bst6I	CTCTTC	1 cut(s)	63
BstDSI	CCRYGG	1 cut(s)	234
BstFNI	CGCG	2 cut(s)	298, 362
BstKTI	GATC	5 cut(s)	16, 75, 145, 247, 348
BstMBI	GATC	5 cut(s)	13, 72, 142, 244, 345
BstMWI	GCNNNNNNNGC	1 cut(s)	205
BstNI	CCWGG	1 cut(s)	310
BstSCI	CCNGG	1 cut(s)	308
BstSLI	GKGCMC	1 cut(s)	243
BstUI	CGCG	2 cut(s)	298, 362
BstV1I	GCAGC	1 cut(s)	217
BstX2I	RGATCY	3 cut(s)	72, 142, 345
BstYI	RGATCY	3 cut(s)	72, 142, 345
BtgI	CCRYGG	1 cut(s)	234
BtsI	GCAGTG	1 cut(s)	114
BtsIMutI	CAGTG	2 cut(s)	114, 141
Csp6I	GTAC	1 cut(s)	225
CviJI	RGCY	4 cut(s)	60, 125, 178, 208
CviKI_1	RGCY	4 cut(s)	60, 125, 178, 208
CviQI	GTAC	1 cut(s)	225
DpnI	GATC	5 cut(s)	15, 74, 144, 246, 347
DpnII	GATC	5 cut(s)	13, 72, 142, 244, 345
Eam1104I	CTCTTC	1 cut(s)	63
EarI	CTCTTC	1 cut(s)	63
EcoRI	GAATTC	1 cut(s)	334
EcoRII	CCWGG	1 cut(s)	308
FaiI	YATR	2 cut(s)	51, 211
FalI	AAGNNNNNCTT	2 cut(s)	44, 76
FauI	CCCGC	2 cut(s)	204, 355
Fnu4HI	GCNGC	1 cut(s)	206
Fsp4HI	GCNGC	1 cut(s)	206
GluI	GCNGC	1 cut(s)	206
HapII	CCGG	1 cut(s)	339
HinfI	GANTC	2 cut(s)	164, 352
HpaII	CCGG	1 cut(s)	339
Hpy166II	GTNNAC	2 cut(s)	234, 241
Hpy188I	TCNGA	6 cut(s)	13, 111, 154, 249, 326, 345
Hpy188III	TCNNGA	2 cut(s)	181, 349
Hpy8I	GTNNAC	2 cut(s)	234, 241
Hpy99I	CGWCG	2 cut(s)	97, 281
HpyCH4III	ACNGT	2 cut(s)	238, 281
HpyCH4IV	ACGT	1 cut(s)	92
HpyCH4V	TGCA	1 cut(s)	241
HpyF10VI	GCNNNNNNNGC	1 cut(s)	205
HpySE526I	ACGT	1 cut(s)	92
Kzo9I	GATC	5 cut(s)	13, 72, 142, 244, 345
LpnPI	CCDG	8 cut(s)	147, 166, 250, 287, 295, 299, 322, 352
Lsp1109I	GCAGC	1 cut(s)	217
MaeII	ACGT	1 cut(s)	92
MaeIII	GTNAC	1 cut(s)	269
MalI	GATC	5 cut(s)	15, 74, 144, 246, 347
MboI	GATC	5 cut(s)	13, 72, 142, 244, 345
MboII	GAAGA	3 cut(s)	80, 298, 343
MflI	RGATCY	3 cut(s)	72, 142, 345
MhlI	GDGCHC	1 cut(s)	243
MluCI	AATT	2 cut(s)	79, 334
MlyI	GAGTC	1 cut(s)	173
MmeI	TCCRAC	3 cut(s)	128, 192, 304
MnlI	CCTC	3 cut(s)	58, 108, 310
MroXI	GAANNNNTTC	1 cut(s)	59
MslI	CAYNNNNRTG	1 cut(s)	267
MspI	CCGG	1 cut(s)	339
MspR9I	CCNGG	1 cut(s)	310
MvaI	CCWGG	1 cut(s)	310
MvnI	CGCG	2 cut(s)	298, 362
MwoI	GCNNNNNNNGC	1 cut(s)	205
NdeII	GATC	5 cut(s)	13, 72, 142, 244, 345
NlaIV	GGNNCC	1 cut(s)	132
NmuCI	GTSAC	1 cut(s)	269
OliI	CACNNNNGTG	1 cut(s)	267
PdmI	GAANNNNTTC	1 cut(s)	59
PfeI	GAWTC	1 cut(s)	352
PkrI	GCNGC	1 cut(s)	207
PleI	GAGTC	1 cut(s)	172
PpsI	GAGTC	1 cut(s)	172
Psp6I	CCWGG	1 cut(s)	308
PspGI	CCWGG	1 cut(s)	308
PspN4I	GGNNCC	1 cut(s)	132
PsuI	RGATCY	3 cut(s)	72, 142, 345
RsaI	GTAC	1 cut(s)	226
RsaNI	GTAC	1 cut(s)	225
RseI	CAYNNNNRTG	1 cut(s)	267
SatI	GCNGC	1 cut(s)	206
Sau3AI	GATC	5 cut(s)	13, 72, 142, 244, 345
SchI	GAGTC	1 cut(s)	173
ScrFI	CCNGG	1 cut(s)	310
SduI	GDGCHC	1 cut(s)	243
SetI	ASST	6 cut(s)	95, 127, 180, 210, 306, 321
SmiMI	CAYNNNNRTG	1 cut(s)	267
Sse9I	AATT	2 cut(s)	79, 334
SsiI	CCGC	2 cut(s)	197, 362
StyD4I	CCNGG	1 cut(s)	308
TaaI	ACNGT	2 cut(s)	238, 281
TaiI	ACGT	1 cut(s)	95
TaqI	TCGA	2 cut(s)	63, 173
TasI	AATT	2 cut(s)	79, 334
TfiI	GAWTC	1 cut(s)	352
TscAI	CASTG	2 cut(s)	121, 141
TseFI	GTSAC	1 cut(s)	269
TseI	GCWGC	1 cut(s)	205
Tsp45I	GTSAC	1 cut(s)	269
TspDTI	ATGAA	1 cut(s)	203
TspGWI	ACGGA	1 cut(s)	219
TspRI	CASTG	2 cut(s)	121, 141
VneI	GTGCAC	1 cut(s)	239
XapI	RAATTY	1 cut(s)	334
XcmI	CCANNNNNNNNNTGG	1 cut(s)	316
XmnI	GAANNNNTTC	1 cut(s)	59

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.