AT1G13600
BZIP Family

arabidopsis thaliana basic leucine-zipper

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0012846
Physical Location & Seq
Reverse (-)
4650606 .. 4651549
944 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G13600.1

Sequence Viewer

Length: 591 bp
ATGAACACGATTCCAGCCGAACTCACTGGATACTTCCACTATCTACCACCAGATAAATATAATAACCAAACACCAATCATGGAGTCTGAGTACTTCAACATGCCCTCTTCTCCTACTTCTTGTTCCTCCTTCTACCACCTCAATGGTCTGATCAACAACAACAACTACTCTTCATCATCCAATGGTCAGGATCTAATGACGAGCAACAACTCAACTTCAGACGAAGATCACCAACAAAGTATGGTCATCGATGAGAGGAAACAAAGGAGAATGATCTCTAACAGGGAATCTGCTCGTAGGTCAAGAATGAGAAAGCAGAGACATCTCGATGAGCTTTGGTCTCAAGTGATAAGACTTCGCACTGATAACCACTGTCTTATGGATAAGCTGAACCGCGTATCTGAAAGCCATGAGCTTGCTTTAAAGGAGAACGCTAAGCTTAAAGAGGAAACTTCTGATCTCAGACAGCTGATCTCTGAGATAAAGTCACACAACGAAGACGACAACAGTTTTTTAAGAGAGCTCGAAGATTCGATATCAAACTCTAGATCGGATTCGAACCAAAGCGGCAGAGATTTTGAGTTGTGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
bZIP_1

Protein Analysis

196

Amino Acids

22.87

Weight (kDa)

5.52

Isoelectric Point (pI)

64.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
bZIP_2 PF07716 84 - 131 1.1e-08 Basic region leucine zipper
bZIP_1 PF00170 86 - 138 2e-10 bZIP transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012846)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G13600 AT2G04038
fragaria_vesca FvH4_4g28780
malus_domestica MD13G1053800.v1.1 MD16G1052300.v1.1
prunus_persica Prupe.1G298200_v2.0.a1
pyrus_communis pycom13g04800 pycom16g04590
rosa_chinensis RchiOBHm_Chr4g0436911
rosa_laevigata RLG00000006488
rosa_multiflora Rmu_sc0001464.1_g000012
rosa_roxburghii Rroxscaffold_5G00377960
rosa_rugosa Rorug04G0297100
rosa_samantha Rh4AG351600 Rh4BG360400 Rh4CG374700 Rh4DG354800
rosa_wichuraiana Rw4G030770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 396
AciI CCGC 2 cut(s) 394, 567
AclWI GGATC 1 cut(s) 198
AcuI CTGAAG 1 cut(s) 201
AfaI GTAC 1 cut(s) 92
AgsI TTSAA 1 cut(s) 97
AluBI AGCT 6 cut(s) 334, 388, 415, 439, 469, 523
AluI AGCT 6 cut(s) 334, 388, 415, 439, 469, 523
Alw21I GWGCWC 1 cut(s) 525
Alw26I GTCTC 2 cut(s) 313, 345
AlwI GGATC 1 cut(s) 198
AsuHPI GGTGA 1 cut(s) 221
AsuII TTCGAA 1 cut(s) 557
BanII GRGCYC 1 cut(s) 525
BbsI GAAGAC 1 cut(s) 504
Bbv12I GWGCWC 1 cut(s) 525
BciVI GTATCC 1 cut(s) 23
BclI TGATCA 1 cut(s) 150
BcoDI GTCTC 2 cut(s) 313, 345
BfaI CTAG 1 cut(s) 546
BfuI GTATCC 1 cut(s) 23
BisI GCNGC 1 cut(s) 568
BlpI GCTNAGC 1 cut(s) 435
BlsI GCNGC 1 cut(s) 569
BmcAI AGTACT 1 cut(s) 92
BpiI GAAGAC 1 cut(s) 504
Bpu1102I GCTNAGC 1 cut(s) 435
Bpu14I TTCGAA 1 cut(s) 557
BpuEI CTTGAG 1 cut(s) 327
Bsa29I ATCGAT 1 cut(s) 249
BsaI GGTCTC 1 cut(s) 345
BsaXI ACNNNNNCTCC 2 cut(s) 74, 104
Bse1I ACTGG 1 cut(s) 31
BseCI ATCGAT 1 cut(s) 249
BseGI GGATG 1 cut(s) 176
BseMII CTCAG 3 cut(s) 78, 468, 475
BseNI ACTGG 1 cut(s) 31
Bsh1236I CGCG 1 cut(s) 396
BshVI ATCGAT 1 cut(s) 249
BsiHKAI GWGCWC 1 cut(s) 525
BsmAI GTCTC 2 cut(s) 313, 345
Bso31I GGTCTC 1 cut(s) 345
Bsp119I TTCGAA 1 cut(s) 557
Bsp1286I GDGCHC 1 cut(s) 525
Bsp143I GATC 7 cut(s) 150, 190, 226, 273, 457, 471, 548
Bsp1720I GCTNAGC 1 cut(s) 435
BspACI CCGC 2 cut(s) 394, 567
BspCNI CTCAG 3 cut(s) 79, 469, 474
BspDI ATCGAT 1 cut(s) 249
BspFNI CGCG 1 cut(s) 396
BspPI GGATC 1 cut(s) 198
BspT104I TTCGAA 1 cut(s) 557
BspTNI GGTCTC 1 cut(s) 345
BsrI ACTGG 1 cut(s) 31
BssMI GATC 7 cut(s) 150, 190, 226, 273, 457, 471, 548
Bst4CI ACNGT 2 cut(s) 374, 509
Bst6I CTCTTC 2 cut(s) 112, 175
BstBI TTCGAA 1 cut(s) 557
BstC8I GCNNGC 1 cut(s) 417
BstDEI CTNAG 4 cut(s) 87, 435, 461, 477
BstF5I GGATG 1 cut(s) 176
BstFNI CGCG 1 cut(s) 396
BstKTI GATC 7 cut(s) 153, 193, 229, 276, 460, 474, 551
BstMAI GTCTC 2 cut(s) 313, 345
BstMBI GATC 7 cut(s) 150, 190, 226, 273, 457, 471, 548
BstNSI RCATGY 1 cut(s) 103
BstUI CGCG 1 cut(s) 396
BstV2I GAAGAC 1 cut(s) 504
BstX2I RGATCY 1 cut(s) 190
BstXI CCANNNNNNTGG 1 cut(s) 143
BstYI RGATCY 1 cut(s) 190
Bsu15I ATCGAT 1 cut(s) 249
BsuI GTATCC 1 cut(s) 23
BsuTUI ATCGAT 1 cut(s) 249
BtsCI GGATG 1 cut(s) 176
BtsIMutI CAGTG 3 cut(s) 24, 360, 370
Cac8I GCNNGC 1 cut(s) 417
ClaI ATCGAT 1 cut(s) 249
Csp6I GTAC 1 cut(s) 91
CviAII CATG 3 cut(s) 79, 100, 410
CviJI RGCY 8 cut(s) 17, 334, 388, 408, 415, 439, 469, 523
CviKI_1 RGCY 8 cut(s) 17, 334, 388, 408, 415, 439, 469, 523
CviQI GTAC 1 cut(s) 91
DdeI CTNAG 4 cut(s) 87, 435, 461, 477
DpnI GATC 7 cut(s) 152, 192, 228, 275, 459, 473, 550
DpnII GATC 7 cut(s) 150, 190, 226, 273, 457, 471, 548
DraI TTTAAA 1 cut(s) 423
Eam1104I CTCTTC 2 cut(s) 112, 175
EarI CTCTTC 2 cut(s) 112, 175
Ecl136II GAGCTC 1 cut(s) 523
Eco24I GRGCYC 1 cut(s) 525
Eco31I GGTCTC 1 cut(s) 345
Eco32I GATATC 1 cut(s) 537
Eco53kI GAGCTC 1 cut(s) 523
Eco57I CTGAAG 1 cut(s) 201
EcoICRI GAGCTC 1 cut(s) 523
EcoRV GATATC 1 cut(s) 537
EcoT38I GRGCYC 1 cut(s) 525
FaeI CATG 3 cut(s) 82, 103, 413
FaiI YATR 6 cut(s) 60, 80, 101, 242, 380, 411
FatI CATG 3 cut(s) 78, 99, 409
FbaI TGATCA 1 cut(s) 150
Fnu4HI GCNGC 1 cut(s) 568
FokI GGATG 1 cut(s) 163
FriOI GRGCYC 1 cut(s) 525
Fsp4HI GCNGC 1 cut(s) 568
FspBI CTAG 1 cut(s) 546
GluI GCNGC 1 cut(s) 568
Hin1II CATG 3 cut(s) 82, 103, 413
HindIII AAGCTT 1 cut(s) 437
HinfI GANTC 5 cut(s) 10, 83, 287, 530, 554
HphI GGTGA 1 cut(s) 221
Hpy188I TCNGA 8 cut(s) 88, 150, 220, 403, 457, 464, 478, 553
Hpy188III TCNNGA 4 cut(s) 188, 303, 326, 546
HpyAV CCTTC 1 cut(s) 139
HpyCH4III ACNGT 2 cut(s) 374, 509
HpyF3I CTNAG 4 cut(s) 87, 435, 461, 477
Hsp92II CATG 3 cut(s) 82, 103, 413
Ksp22I TGATCA 1 cut(s) 150
Kzo9I GATC 7 cut(s) 150, 190, 226, 273, 457, 471, 548
LpnPI CCDG 5 cut(s) 12, 27, 63, 173, 268
MaeI CTAG 1 cut(s) 546
MaeIII GTNAC 1 cut(s) 486
MalI GATC 7 cut(s) 152, 192, 228, 275, 459, 473, 550
MboI GATC 7 cut(s) 150, 190, 226, 273, 457, 471, 548
MboII GAAGA 5 cut(s) 99, 162, 236, 509, 539
MflI RGATCY 1 cut(s) 190
MhlI GDGCHC 1 cut(s) 525
MlyI GAGTC 1 cut(s) 92
MnlI CCTC 5 cut(s) 115, 136, 149, 249, 439
MseI TTAA 4 cut(s) 422, 441, 515, 589
MslI CAYNNNNRTG 2 cut(s) 141, 327
MspA1I CMGCKG 1 cut(s) 469
MvnI CGCG 1 cut(s) 396
NdeII GATC 7 cut(s) 150, 190, 226, 273, 457, 471, 548
NlaIII CATG 3 cut(s) 82, 103, 413
NmuCI GTSAC 1 cut(s) 486
NspI RCATGY 1 cut(s) 103
NspV TTCGAA 1 cut(s) 557
PfeI GAWTC 4 cut(s) 10, 287, 530, 554
PkrI GCNGC 1 cut(s) 569
PleI GAGTC 1 cut(s) 91
PpsI GAGTC 1 cut(s) 91
Psp124BI GAGCTC 1 cut(s) 525
PsuI RGATCY 1 cut(s) 190
PvuII CAGCTG 1 cut(s) 469
RsaI GTAC 1 cut(s) 92
RsaNI GTAC 1 cut(s) 91
RseI CAYNNNNRTG 2 cut(s) 141, 327
SacI GAGCTC 1 cut(s) 525
SaqAI TTAA 4 cut(s) 422, 441, 515, 589
SatI GCNGC 1 cut(s) 568
Sau3AI GATC 7 cut(s) 150, 190, 226, 273, 457, 471, 548
ScaI AGTACT 1 cut(s) 92
SchI GAGTC 1 cut(s) 92
SduI GDGCHC 1 cut(s) 525
SetI ASST 8 cut(s) 141, 302, 336, 390, 417, 441, 471, 525
SfuI TTCGAA 1 cut(s) 557
SmiMI CAYNNNNRTG 2 cut(s) 141, 327
SmlI CTYRAG 1 cut(s) 342
SmoI CTYRAG 1 cut(s) 342
SsiI CCGC 2 cut(s) 394, 567
SspMI CTAG 1 cut(s) 546
SstI GAGCTC 1 cut(s) 525
TaaI ACNGT 2 cut(s) 374, 509
TaqI TCGA 5 cut(s) 249, 327, 525, 533, 557
TatI WGTACW 1 cut(s) 90
TauI GCSGC 1 cut(s) 570
TfiI GAWTC 4 cut(s) 10, 287, 530, 554
Tru1I TTAA 4 cut(s) 422, 441, 515, 589
Tru9I TTAA 4 cut(s) 422, 441, 515, 589
TscAI CASTG 3 cut(s) 31, 367, 377
TseFI GTSAC 1 cut(s) 486
Tsp45I GTSAC 1 cut(s) 486
TspDTI ATGAA 2 cut(s) 17, 162
TspRI CASTG 3 cut(s) 31, 367, 377
XbaI TCTAGA 1 cut(s) 545
XceI RCATGY 1 cut(s) 103
XspI CTAG 1 cut(s) 546
ZrmI AGTACT 1 cut(s) 92
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.