FvH4_4g28780
BZIP Family

basic region leucin zipper

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0012846
Physical Location & Seq
Reverse (-)
29277333 .. 29277926
594 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g28780.t1

Sequence Viewer

Length: 594 bp
ATGCTTTCTGAGATTTCAGGAATTCACTACCTGACTACACCTGAATTCCAGCTTCCAAATCCTGCAAACTTTGGCAATATAATCATGCAGGACAACTTACCAAACTCCTTCCATTTCAATGAAGCATCAGTCTACAGCAACTTATTCCAAACTCAAATTCCTCCTCCTGGGCATGATCAATTGTTCGCTACTCCGATGCAGTCCTCGAGTCTCAGCAACAACTCCAGTACCTCCGATGAAGCCGAAGAACAAGTGCAGCAGCTGAGCAACATCATTGATCAAAGGAAGCAGCGGAGAATGATATCAAACAGAGAATCGGCTCGCAGATCACGGATGCGGAAGCAGAAACACTTGGATGAGCTCTGGTCGCAGGTGCTTCGGCTTAGAACCGAAAACCACAGCTTGATAGACAGATTGAACCATGTGTCCGAGAGCCATGACAAGGTTCTTGAGGAGAATGCAAAGCTCAAGGAAGAAGCATCGGATCTTCGACAAATGCTCACCGAGATCCAGATCAGCACGGCCTTGAGATCGACAGAGCTGGAAGTAGATGTGCCCTGCAGCACAACTTCAAGCACCGACTTGCTCCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
bZIP_1

Protein Analysis

198

Amino Acids

22.58

Weight (kDa)

5.46

Isoelectric Point (pI)

58.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
bZIP_2 PF07716 93 - 139 8.1e-08 Basic region leucine zipper
bZIP_1 PF00170 95 - 153 3.5e-13 bZIP transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012846)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G13600 AT2G04038
fragaria_vesca FvH4_4g28780
malus_domestica MD13G1053800.v1.1 MD16G1052300.v1.1
prunus_persica Prupe.1G298200_v2.0.a1
pyrus_communis pycom13g04800 pycom16g04590
rosa_chinensis RchiOBHm_Chr4g0436911
rosa_laevigata RLG00000006488
rosa_multiflora Rmu_sc0001464.1_g000012
rosa_roxburghii Rroxscaffold_5G00377960
rosa_rugosa Rorug04G0297100
rosa_samantha Rh4AG351600 Rh4BG360400 Rh4CG374700 Rh4DG354800
rosa_wichuraiana Rw4G030770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 361
Acc36I ACCTGC 1 cut(s) 361
AccI GTMKAC 1 cut(s) 132
AciI CCGC 2 cut(s) 292, 337
AclWI GGATC 2 cut(s) 492, 502
AcsI RAATTY 3 cut(s) 21, 44, 156
AfaI GTAC 1 cut(s) 229
AfiI CCNNNNNNNGG 2 cut(s) 167, 442
AgsI TTSAA 3 cut(s) 118, 418, 573
AjnI CCWGG 1 cut(s) 166
AjuI GAANNNNNNNTTGG 2 cut(s) 141, 173
AloI GAACNNNNNNTCC 2 cut(s) 410, 442
AluBI AGCT 6 cut(s) 52, 262, 361, 402, 466, 541
AluI AGCT 6 cut(s) 52, 262, 361, 402, 466, 541
Alw21I GWGCWC 1 cut(s) 363
Alw26I GTCTC 1 cut(s) 215
AlwI GGATC 2 cut(s) 492, 502
AlwNI CAGNNNCTG 1 cut(s) 262
Ama87I CYCGRG 1 cut(s) 205
AoxI GGCC 1 cut(s) 522
ApeKI GCWGC 4 cut(s) 256, 259, 289, 561
ApoI RAATTY 3 cut(s) 21, 44, 156
AsuHPI GGTGA 1 cut(s) 493
AvaI CYCGRG 1 cut(s) 205
BaeGI GKGCMC 1 cut(s) 558
BaeI ACNNNNGTAYC 2 cut(s) 211, 244
BanII GRGCYC 1 cut(s) 363
Bbv12I GWGCWC 1 cut(s) 363
BbvI GCAGC 4 cut(s) 268, 271, 301, 573
BceAI ACGGC 1 cut(s) 537
BcgI CGANNNNNNTGC 2 cut(s) 359, 393
BciT130I CCWGG 1 cut(s) 168
BclI TGATCA 2 cut(s) 175, 277
BcoDI GTCTC 1 cut(s) 215
BfmI CTRYAG 2 cut(s) 133, 559
BfuAI ACCTGC 1 cut(s) 361
BisI GCNGC 4 cut(s) 257, 260, 290, 562
BlpI GCTNAGC 1 cut(s) 263
BlsI GCNGC 4 cut(s) 258, 261, 291, 563
Bme1390I CCNGG 1 cut(s) 168
BmeT110I CYCGRG 1 cut(s) 205
BmrFI CCNGG 1 cut(s) 168
BmsI GCATC 4 cut(s) 134, 186, 324, 488
BpmI CTGGAG 1 cut(s) 208
Bpu1102I GCTNAGC 1 cut(s) 263
BpuEI CTTGAG 3 cut(s) 452, 470, 547
BsaBI GATNNNNATC 1 cut(s) 512
BsaJI CCNNGG 1 cut(s) 167
Bsc4I CCNNNNNNNGG 2 cut(s) 167, 442
Bse1I ACTGG 1 cut(s) 225
Bse8I GATNNNNATC 1 cut(s) 512
BseBI CCWGG 1 cut(s) 168
BseDI CCNNGG 1 cut(s) 167
BseGI GGATG 2 cut(s) 339, 361
BseJI GATNNNNATC 1 cut(s) 512
BseLI CCNNNNNNNGG 2 cut(s) 167, 442
BseMII CTCAG 2 cut(s) 226, 254
BseNI ACTGG 1 cut(s) 225
BseRI GAGGAG 2 cut(s) 153, 467
BseSI GKGCMC 1 cut(s) 558
BseXI GCAGC 4 cut(s) 268, 271, 301, 573
BsgI GTGCAG 1 cut(s) 275
BshFI GGCC 1 cut(s) 524
BsiHKAI GWGCWC 1 cut(s) 363
BsiHKCI CYCGRG 1 cut(s) 205
BslI CCNNNNNNNGG 2 cut(s) 167, 442
BsmAI GTCTC 1 cut(s) 215
BsmI GAATGC 1 cut(s) 463
BsnI GGCC 1 cut(s) 524
BsoBI CYCGRG 1 cut(s) 205
Bsp1286I GDGCHC 2 cut(s) 363, 558
Bsp143I GATC 7 cut(s) 175, 277, 326, 484, 507, 513, 530
Bsp1720I GCTNAGC 1 cut(s) 263
BspACI CCGC 2 cut(s) 292, 337
BspANI GGCC 1 cut(s) 524
BspCNI CTCAG 2 cut(s) 225, 255
BspMAI CTGCAG 1 cut(s) 563
BspMI ACCTGC 1 cut(s) 361
BspPI GGATC 2 cut(s) 492, 502
BsrI ACTGG 1 cut(s) 225
BssECI CCNNGG 1 cut(s) 167
BssMI GATC 7 cut(s) 175, 277, 326, 484, 507, 513, 530
Bst2UI CCWGG 1 cut(s) 168
BstC8I GCNNGC 1 cut(s) 322
BstDEI CTNAG 4 cut(s) 9, 212, 263, 383
BstF5I GGATG 2 cut(s) 339, 361
BstKTI GATC 7 cut(s) 178, 280, 329, 487, 510, 516, 533
BstMAI GTCTC 1 cut(s) 215
BstMBI GATC 7 cut(s) 175, 277, 326, 484, 507, 513, 530
BstMWI GCNNNNNNNGC 1 cut(s) 367
BstNI CCWGG 1 cut(s) 168
BstSCI CCNGG 1 cut(s) 166
BstSFI CTRYAG 2 cut(s) 133, 559
BstSLI GKGCMC 1 cut(s) 558
BstV1I GCAGC 4 cut(s) 268, 271, 301, 573
BstX2I RGATCY 2 cut(s) 484, 507
BstYI RGATCY 2 cut(s) 484, 507
BsuRI GGCC 1 cut(s) 524
BtsCI GGATG 2 cut(s) 339, 361
BveI ACCTGC 1 cut(s) 361
Cac8I GCNNGC 1 cut(s) 322
CaiI CAGNNNCTG 1 cut(s) 262
Csp6I GTAC 1 cut(s) 228
CviAII CATG 4 cut(s) 85, 173, 422, 437
CviQI GTAC 1 cut(s) 228
DdeI CTNAG 4 cut(s) 9, 212, 263, 383
DpnI GATC 7 cut(s) 177, 279, 328, 486, 509, 515, 532
DpnII GATC 7 cut(s) 175, 277, 326, 484, 507, 513, 530
Ecl136II GAGCTC 1 cut(s) 361
Eco24I GRGCYC 1 cut(s) 363
Eco32I GATATC 1 cut(s) 303
Eco53kI GAGCTC 1 cut(s) 361
Eco88I CYCGRG 1 cut(s) 205
EcoICRI GAGCTC 1 cut(s) 361
EcoRI GAATTC 2 cut(s) 21, 44
EcoRII CCWGG 1 cut(s) 166
EcoRV GATATC 1 cut(s) 303
EcoT38I GRGCYC 1 cut(s) 363
FaeI CATG 4 cut(s) 88, 176, 425, 440
FaiI YATR 5 cut(s) 80, 86, 174, 423, 438
FatI CATG 4 cut(s) 84, 172, 421, 436
FbaI TGATCA 2 cut(s) 175, 277
FblI GTMKAC 1 cut(s) 132
Fnu4HI GCNGC 4 cut(s) 257, 260, 290, 562
FokI GGATG 2 cut(s) 346, 368
FriOI GRGCYC 1 cut(s) 363
Fsp4HI GCNGC 4 cut(s) 257, 260, 290, 562
GluI GCNGC 4 cut(s) 257, 260, 290, 562
GsuI CTGGAG 1 cut(s) 208
HaeIII GGCC 1 cut(s) 524
Hin1II CATG 4 cut(s) 88, 176, 425, 440
HinfI GANTC 2 cut(s) 208, 314
HphI GGTGA 1 cut(s) 493
Hpy166II GTNNAC 1 cut(s) 133
Hpy188I TCNGA 5 cut(s) 10, 195, 235, 430, 484
Hpy188III TCNNGA 3 cut(s) 18, 449, 511
Hpy8I GTNNAC 1 cut(s) 133
HpyAV CCTTC 1 cut(s) 118
HpyCH4V TGCA 6 cut(s) 65, 88, 199, 256, 461, 561
HpyF10VI GCNNNNNNNGC 1 cut(s) 367
HpyF3I CTNAG 4 cut(s) 9, 212, 263, 383
Hsp92II CATG 4 cut(s) 88, 176, 425, 440
Ksp22I TGATCA 2 cut(s) 175, 277
Kzo9I GATC 7 cut(s) 175, 277, 326, 484, 507, 513, 530
LmnI GCTCC 1 cut(s) 591
Lsp1109I GCAGC 4 cut(s) 268, 271, 301, 573
LweI GCATC 4 cut(s) 134, 186, 324, 488
MalI GATC 7 cut(s) 177, 279, 328, 486, 509, 515, 532
MboI GATC 7 cut(s) 175, 277, 326, 484, 507, 513, 530
MboII GAAGA 3 cut(s) 257, 479, 485
MfeI CAATTG 1 cut(s) 179
MflI RGATCY 2 cut(s) 484, 507
MhlI GDGCHC 2 cut(s) 363, 558
MluCI AATT 4 cut(s) 21, 44, 156, 179
MlyI GAGTC 1 cut(s) 217
MnlI CCTC 5 cut(s) 171, 174, 214, 241, 445
MslI CAYNNNNRTG 2 cut(s) 117, 354
MspA1I CMGCKG 2 cut(s) 262, 292
MspR9I CCNGG 1 cut(s) 168
MunI CAATTG 1 cut(s) 179
Mva1269I GAATGC 1 cut(s) 463
MvaI CCWGG 1 cut(s) 168
MwoI GCNNNNNNNGC 1 cut(s) 367
NdeII GATC 7 cut(s) 175, 277, 326, 484, 507, 513, 530
NlaIII CATG 4 cut(s) 88, 176, 425, 440
PaeR7I CTCGAG 1 cut(s) 205
PaqCI CACCTGC 1 cut(s) 361
PctI GAATGC 1 cut(s) 463
PfeI GAWTC 1 cut(s) 314
PkrI GCNGC 4 cut(s) 258, 261, 291, 563
PleI GAGTC 1 cut(s) 216
PpsI GAGTC 1 cut(s) 216
Psp124BI GAGCTC 1 cut(s) 363
Psp6I CCWGG 1 cut(s) 166
PspGI CCWGG 1 cut(s) 166
PspXI VCTCGAGB 1 cut(s) 205
PstI CTGCAG 1 cut(s) 563
PstNI CAGNNNCTG 1 cut(s) 262
PsuI RGATCY 2 cut(s) 484, 507
PvuII CAGCTG 1 cut(s) 262
RsaI GTAC 1 cut(s) 229
RsaNI GTAC 1 cut(s) 228
RseI CAYNNNNRTG 2 cut(s) 117, 354
SacI GAGCTC 1 cut(s) 363
SatI GCNGC 4 cut(s) 257, 260, 290, 562
Sau3AI GATC 7 cut(s) 175, 277, 326, 484, 507, 513, 530
SchI GAGTC 1 cut(s) 217
ScrFI CCNGG 1 cut(s) 168
SduI GDGCHC 2 cut(s) 363, 558
SfaNI GCATC 4 cut(s) 134, 186, 324, 488
SfcI CTRYAG 2 cut(s) 133, 559
Sfr274I CTCGAG 1 cut(s) 205
SlaI CTCGAG 1 cut(s) 205
SmiMI CAYNNNNRTG 2 cut(s) 117, 354
SmlI CTYRAG 4 cut(s) 205, 449, 467, 526
SmoI CTYRAG 4 cut(s) 205, 449, 467, 526
Sse9I AATT 4 cut(s) 21, 44, 156, 179
SsiI CCGC 2 cut(s) 292, 337
SstI GAGCTC 1 cut(s) 363
StyD4I CCNGG 1 cut(s) 166
TaqI TCGA 3 cut(s) 206, 490, 533
TasI AATT 4 cut(s) 21, 44, 156, 179
TfiI GAWTC 1 cut(s) 314
TseI GCWGC 4 cut(s) 256, 259, 289, 561
TspDTI ATGAA 2 cut(s) 135, 252
TspGWI ACGGA 1 cut(s) 346
XapI RAATTY 3 cut(s) 21, 44, 156
XhoI CTCGAG 1 cut(s) 205
XmiI GTMKAC 1 cut(s) 132
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.