pycom16g04590
BZIP Family

basic region leucin zipper

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
OG0012846
Physical Location & Seq
Reverse (-)
2929595 .. 2930317
723 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom16g04590.1

Sequence Viewer

Length: 723 bp
ATGCTGTCATCGCCTGCCCTCCAAAACACAGGTCGCAGCCCCTTCAACTGCAAGTTCAACTGCAAGTCCATAAAAAACCTTAAACAAAAAATCTCAGCTTTTAGAGCCATGCTTCCAGGTGAGATCATCTCAGGACTCCACTACTTCGAACCTGAAATCCCACTTCCAAATCCCTCCGACTATGCCTTCATGCACAACCAAATCCCCTCCCACCATTTCAACACCTTGTTCAACAACTTATCCCGTCAAATCCCTCCTCCTCCAGGCCATGACTTCACTCAACAATCCTCCAGCCTCAGCTACAACTCCAGCACCTCCGACGACGCTGAAGAACACCACCACCTCAGAGTCATCGAAGAGAGGAAGCAGAGGAGAATGATATCCAACAGAGAATCTGCTCGGAGATCGCGGATGAGGAAGCAGAAGCACCTCGACGAGCTGTGGTCGCAGGTGGTGCGGCTGAGGAACGAGAACCACAGCCTGATAGGCAGGTTGAACAACGTTTCGGAGTCCCGCGACAGGGTTGTGGAGGAGAATGCTCGGCTCAAGGAAGAAGCTTCCGACCTTCGTCAAATGCTCACAAACCTGCAGATTGGCAGCCCTTACAATATAAATGCTTCCACCTTCAGAGAGCTGGATTCAGATGTGCCCTGCATCACGGCCCATCTCAGAGCCGAATCCTCGAACCAATCCATCGCCGCATCGGCCGATTTGCTCCATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
bZIP_1

Protein Analysis

241

Amino Acids

27.51

Weight (kDa)

8.83

Isoelectric Point (pI)

70.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
bZIP_2 PF07716 119 - 165 1.1e-07 Basic region leucine zipper
bZIP_1 PF00170 121 - 172 1.7e-12 bZIP transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012846)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G13600 AT2G04038
fragaria_vesca FvH4_4g28780
malus_domestica MD13G1053800.v1.1 MD16G1052300.v1.1
prunus_persica Prupe.1G298200_v2.0.a1
pyrus_communis pycom13g04800 pycom16g04590
rosa_chinensis RchiOBHm_Chr4g0436911
rosa_laevigata RLG00000006488
rosa_multiflora Rmu_sc0001464.1_g000012
rosa_roxburghii Rroxscaffold_5G00377960
rosa_rugosa Rorug04G0297100
rosa_samantha Rh4AG351600 Rh4BG360400 Rh4CG374700 Rh4DG354800
rosa_wichuraiana Rw4G030770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 439
Acc36I ACCTGC 3 cut(s) 439, 480, 594
AccII CGCG 2 cut(s) 409, 516
AciI CCGC 4 cut(s) 409, 457, 514, 699
AclI AACGTT 1 cut(s) 501
AcoI YGGCCR 1 cut(s) 705
AcuI CTGAAG 2 cut(s) 348, 610
AfiI CCNNNNNNNGG 3 cut(s) 263, 519, 520
AgsI TTSAA 5 cut(s) 46, 58, 220, 232, 496
AjnI CCWGG 2 cut(s) 115, 262
AloI GAACNNNNNNTCC 2 cut(s) 141, 173
AluBI AGCT 5 cut(s) 98, 300, 439, 557, 634
AluI AGCT 5 cut(s) 98, 300, 439, 557, 634
AoxI GGCC 3 cut(s) 265, 660, 705
ApeKI GCWGC 2 cut(s) 36, 597
ArsI GACNNNNNNTTYG 2 cut(s) 16, 48
AspS9I GGNCC 1 cut(s) 661
AsuHPI GGTGA 1 cut(s) 131
AsuII TTCGAA 1 cut(s) 147
BaeGI GKGCMC 1 cut(s) 651
BbvCI CCTCAGC 2 cut(s) 296, 461
BbvI GCAGC 2 cut(s) 48, 609
BccI CCATC 2 cut(s) 672, 701
BceAI ACGGC 1 cut(s) 675
BciT130I CCWGG 2 cut(s) 117, 264
BfmI CTRYAG 1 cut(s) 587
BfuAI ACCTGC 3 cut(s) 439, 480, 594
BglI GCCNNNNNGGC 2 cut(s) 486, 704
BisI GCNGC 4 cut(s) 37, 458, 598, 699
BlsI GCNGC 4 cut(s) 38, 459, 599, 700
Bme1390I CCNGG 2 cut(s) 117, 264
BmgT120I GGNCC 1 cut(s) 661
BmrFI CCNGG 2 cut(s) 117, 264
BmsI GCATC 2 cut(s) 663, 710
BoxI GACNNNNGTC 1 cut(s) 567
BplI GAGNNNNNCTC 2 cut(s) 113, 145
BpmI CTGGAG 3 cut(s) 246, 274, 292
Bpu10I CCTNAGC 2 cut(s) 296, 461
Bpu14I TTCGAA 1 cut(s) 147
BpuEI CTTGAG 1 cut(s) 530
Bsc4I CCNNNNNNNGG 3 cut(s) 263, 519, 520
BseBI CCWGG 2 cut(s) 117, 264
BseGI GGATG 1 cut(s) 417
BseLI CCNNNNNNNGG 3 cut(s) 263, 519, 520
BseMII CTCAG 6 cut(s) 108, 144, 310, 358, 452, 682
BseRI GAGGAG 4 cut(s) 246, 249, 385, 545
BseSI GKGCMC 1 cut(s) 651
BseX3I CGGCCG 1 cut(s) 705
BseXI GCAGC 2 cut(s) 48, 609
Bsh1236I CGCG 2 cut(s) 409, 516
Bsh1285I CGRYCG 1 cut(s) 708
BshFI GGCC 3 cut(s) 267, 662, 707
BsiEI CGRYCG 1 cut(s) 708
BslFI GGGAC 1 cut(s) 496
BslI CCNNNNNNNGG 3 cut(s) 263, 519, 520
BsmFI GGGAC 1 cut(s) 496
BsmI GAATGC 1 cut(s) 541
BsnI GGCC 3 cut(s) 267, 662, 707
Bsp119I TTCGAA 1 cut(s) 147
Bsp1286I GDGCHC 1 cut(s) 651
Bsp143I GATC 2 cut(s) 123, 404
BspACI CCGC 4 cut(s) 409, 457, 514, 699
BspANI GGCC 3 cut(s) 267, 662, 707
BspCNI CTCAG 6 cut(s) 107, 143, 309, 357, 453, 681
BspFNI CGCG 2 cut(s) 409, 516
BspMAI CTGCAG 1 cut(s) 591
BspMI ACCTGC 3 cut(s) 439, 480, 594
BspT104I TTCGAA 1 cut(s) 147
BssMI GATC 2 cut(s) 123, 404
Bst2UI CCWGG 2 cut(s) 117, 264
Bst6I CTCTTC 1 cut(s) 351
BstAPI GCANNNNNTGC 1 cut(s) 454
BstBI TTCGAA 1 cut(s) 147
BstC8I GCNNGC 1 cut(s) 15
BstDEI CTNAG 6 cut(s) 94, 130, 296, 344, 461, 668
BstENI CCTNNNNNAGG 1 cut(s) 261
BstF5I GGATG 1 cut(s) 417
BstFNI CGCG 2 cut(s) 409, 516
BstKTI GATC 2 cut(s) 126, 407
BstMBI GATC 2 cut(s) 123, 404
BstMCI CGRYCG 1 cut(s) 708
BstMWI GCNNNNNNNGC 6 cut(s) 10, 104, 445, 454, 486, 704
BstNI CCWGG 2 cut(s) 117, 264
BstPAI GACNNNNGTC 1 cut(s) 567
BstSCI CCNGG 2 cut(s) 115, 262
BstSFI CTRYAG 1 cut(s) 587
BstSLI GKGCMC 1 cut(s) 651
BstUI CGCG 2 cut(s) 409, 516
BstV1I GCAGC 2 cut(s) 48, 609
BstZI CGGCCG 1 cut(s) 705
BsuRI GGCC 3 cut(s) 267, 662, 707
BtgZI GCGATG 1 cut(s) 679
BtsCI GGATG 1 cut(s) 417
BveI ACCTGC 3 cut(s) 439, 480, 594
Cac8I GCNNGC 1 cut(s) 15
Cfr13I GGNCC 1 cut(s) 661
CseI GACGC 1 cut(s) 332
CviAII CATG 3 cut(s) 109, 190, 269
DdeI CTNAG 6 cut(s) 94, 130, 296, 344, 461, 668
DpnI GATC 2 cut(s) 125, 406
DpnII GATC 2 cut(s) 123, 404
EaeI YGGCCR 1 cut(s) 705
EagI CGGCCG 1 cut(s) 705
Eam1104I CTCTTC 1 cut(s) 351
EarI CTCTTC 1 cut(s) 351
EclXI CGGCCG 1 cut(s) 705
Eco32I GATATC 1 cut(s) 381
Eco52I CGGCCG 1 cut(s) 705
Eco57I CTGAAG 2 cut(s) 348, 610
EcoNI CCTNNNNNAGG 1 cut(s) 261
EcoRII CCWGG 2 cut(s) 115, 262
EcoRV GATATC 1 cut(s) 381
FaeI CATG 3 cut(s) 112, 193, 272
FaiI YATR 6 cut(s) 71, 110, 183, 191, 270, 611
FaqI GGGAC 1 cut(s) 496
FatI CATG 3 cut(s) 108, 189, 268
FauI CCCGC 1 cut(s) 521
Fnu4HI GCNGC 4 cut(s) 37, 458, 598, 699
FokI GGATG 1 cut(s) 424
Fsp4HI GCNGC 4 cut(s) 37, 458, 598, 699
GluI GCNGC 4 cut(s) 37, 458, 598, 699
GsuI CTGGAG 3 cut(s) 246, 274, 292
HaeIII GGCC 3 cut(s) 267, 662, 707
HgaI GACGC 1 cut(s) 332
Hin1II CATG 3 cut(s) 112, 193, 272
HindIII AAGCTT 1 cut(s) 555
HinfI GANTC 6 cut(s) 135, 348, 392, 509, 638, 677
HphI GGTGA 1 cut(s) 131
Hpy188I TCNGA 9 cut(s) 178, 319, 347, 402, 508, 562, 629, 643, 671
Hpy188III TCNNGA 1 cut(s) 132
Hpy99I CGWCG 3 cut(s) 323, 326, 437
HpyAV CCTTC 4 cut(s) 52, 196, 575, 634
HpyCH4IV ACGT 1 cut(s) 501
HpyCH4V TGCA 5 cut(s) 51, 63, 193, 589, 654
HpyF10VI GCNNNNNNNGC 6 cut(s) 10, 104, 445, 454, 486, 704
HpyF3I CTNAG 6 cut(s) 94, 130, 296, 344, 461, 668
HpySE526I ACGT 1 cut(s) 501
Hsp92II CATG 3 cut(s) 112, 193, 272
Kzo9I GATC 2 cut(s) 123, 404
LmnI GCTCC 1 cut(s) 720
Lsp1109I GCAGC 2 cut(s) 48, 609
LweI GCATC 2 cut(s) 663, 710
MaeII ACGT 1 cut(s) 501
MalI GATC 2 cut(s) 125, 406
MboI GATC 2 cut(s) 123, 404
MboII GAAGA 3 cut(s) 341, 368, 563
MhlI GDGCHC 1 cut(s) 651
MlyI GAGTC 3 cut(s) 129, 357, 518
MmeI TCCRAC 4 cut(s) 201, 342, 408, 585
MseI TTAA 2 cut(s) 81, 721
MspR9I CCNGG 2 cut(s) 117, 264
Mva1269I GAATGC 1 cut(s) 541
MvaI CCWGG 2 cut(s) 117, 264
MvnI CGCG 2 cut(s) 409, 516
MwoI GCNNNNNNNGC 6 cut(s) 10, 104, 445, 454, 486, 704
NdeII GATC 2 cut(s) 123, 404
NlaIII CATG 3 cut(s) 112, 193, 272
NmeAIII GCCGAG 1 cut(s) 520
NspV TTCGAA 1 cut(s) 147
PaqCI CACCTGC 1 cut(s) 439
PctI GAATGC 1 cut(s) 541
PfeI GAWTC 3 cut(s) 392, 638, 677
PkrI GCNGC 4 cut(s) 38, 459, 599, 700
PleI GAGTC 3 cut(s) 129, 356, 517
PpsI GAGTC 3 cut(s) 129, 356, 517
PshAI GACNNNNGTC 1 cut(s) 567
Psp1406I AACGTT 1 cut(s) 501
Psp6I CCWGG 2 cut(s) 115, 262
PspGI CCWGG 2 cut(s) 115, 262
PspPI GGNCC 1 cut(s) 661
PstI CTGCAG 1 cut(s) 591
SaqAI TTAA 2 cut(s) 81, 721
SatI GCNGC 4 cut(s) 37, 458, 598, 699
Sau3AI GATC 2 cut(s) 123, 404
Sau96I GGNCC 1 cut(s) 661
SchI GAGTC 3 cut(s) 129, 357, 518
ScrFI CCNGG 2 cut(s) 117, 264
SduI GDGCHC 1 cut(s) 651
SfaNI GCATC 2 cut(s) 663, 710
SfcI CTRYAG 1 cut(s) 587
SfuI TTCGAA 1 cut(s) 147
SmlI CTYRAG 1 cut(s) 545
SmoI CTYRAG 1 cut(s) 545
SsiI CCGC 4 cut(s) 409, 457, 514, 699
StyD4I CCNGG 2 cut(s) 115, 262
TaiI ACGT 1 cut(s) 504
TaqI TCGA 4 cut(s) 147, 354, 432, 683
TauI GCSGC 2 cut(s) 460, 701
TfiI GAWTC 3 cut(s) 392, 638, 677
Tru1I TTAA 2 cut(s) 81, 721
Tru9I TTAA 2 cut(s) 81, 721
TseI GCWGC 2 cut(s) 36, 597
TspDTI ATGAA 1 cut(s) 178
XagI CCTNNNNNAGG 1 cut(s) 261
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.