Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0012846

Physical Location & Seq

Genomic Coordinates Reverse (-)

3739164 .. 3739742

Gene Structure 579 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1052300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

ATGCTTCCAGGTGAGATCATCTCAGGACTCCACTACTTCGAATCTGAAATCCCACTTCGAAATCCCTCCGACTATGCTTTCATGCACAACCAAATCCCCTCCCACCATTTCAACACCTTGTTCAACAACTTATCCCATCAAATCCCTCCTCCTCCAGGCCATGACTTCACTCAACAATCCTCCAGCCTCAGCTACAACTCCAGCACCTCCGACGACGCTGAAGAACACCACCACCTCAGAGTCATCGAAGAGAGGAAGCAGAGGAGAATGATATCCAACAGAGAATCCGCTCGGAGATCGCGGATGAGGAAGCAGAAGCACCTCGACGAGCTGTGGTCGCAGGTGGTGCGGCTAAGGAACGAGAACCACAGCCTGATAGACAGGTTGAACAACGTTTCGGAGTCCCGCGACAGGGTTGTGGAGGAGAATGCTCGGCTCAAGGAAGAATCTTCCGACCTTCGCCAAATGCTCACAAACCTGCAGATTGGCAGCCCTTACAATATAAATGCTTCCACCTTCAGAGAGCTGGATTCAGATGTGCCCTGCATCACGGCCCATCTCAGAACATTTGAACATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

bZIP_1

Protein Analysis

193

Amino Acids

22.52

Weight (kDa)

6.34

Isoelectric Point (pI)

72.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bZIP_2	PF07716	83 - 130	5e-08	Basic region leucine zipper
bZIP_1	PF00170	85 - 137	1.6e-12	bZIP transcription factor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012846)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13600 AT2G04038
fragaria_vesca	FvH4_4g28780
malus_domestica	MD13G1053800.v1.1 MD16G1052300.v1.1
prunus_persica	Prupe.1G298200_v2.0.a1
pyrus_communis	pycom13g04800 pycom16g04590
rosa_chinensis	RchiOBHm_Chr4g0436911
rosa_laevigata	RLG00000006488
rosa_multiflora	Rmu_sc0001464.1_g000012
rosa_roxburghii	Rroxscaffold_5G00377960
rosa_rugosa	Rorug04G0297100
rosa_samantha	Rh4AG351600 Rh4BG360400 Rh4CG374700 Rh4DG354800
rosa_wichuraiana	Rw4G030770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	331
Acc36I	ACCTGC	2 cut(s)	331, 486
AccBSI	CCGCTC	1 cut(s)	290
AccII	CGCG	2 cut(s)	301, 408
AciI	CCGC	4 cut(s)	288, 301, 349, 406
AclI	AACGTT	1 cut(s)	393
AcuI	CTGAAG	2 cut(s)	240, 502
AfiI	CCNNNNNNNGG	3 cut(s)	155, 411, 412
AgsI	TTSAA	4 cut(s)	112, 124, 388, 572
AjnI	CCWGG	2 cut(s)	7, 154
AluBI	AGCT	3 cut(s)	192, 331, 526
AluI	AGCT	3 cut(s)	192, 331, 526
AoxI	GGCC	2 cut(s)	157, 552
ApeKI	GCWGC	1 cut(s)	489
AspS9I	GGNCC	1 cut(s)	553
AsuHPI	GGTGA	1 cut(s)	23
AsuII	TTCGAA	2 cut(s)	39, 58
BaeGI	GKGCMC	1 cut(s)	543
BbvCI	CCTCAGC	1 cut(s)	188
BbvI	GCAGC	1 cut(s)	501
BccI	CCATC	2 cut(s)	144, 564
BceAI	ACGGC	1 cut(s)	567
BciT130I	CCWGG	2 cut(s)	9, 156
BfmI	CTRYAG	1 cut(s)	479
BfuAI	ACCTGC	2 cut(s)	331, 486
BisI	GCNGC	2 cut(s)	350, 490
BlsI	GCNGC	2 cut(s)	351, 491
Bme1390I	CCNGG	2 cut(s)	9, 156
BmgT120I	GGNCC	1 cut(s)	553
BmrFI	CCNGG	2 cut(s)	9, 156
BmsI	GCATC	1 cut(s)	555
BplI	GAGNNNNNCTC	1 cut(s)	37
BpmI	CTGGAG	3 cut(s)	138, 166, 184
Bpu10I	CCTNAGC	2 cut(s)	188, 353
Bpu14I	TTCGAA	2 cut(s)	39, 58
BpuEI	CTTGAG	1 cut(s)	422
Bsc4I	CCNNNNNNNGG	3 cut(s)	155, 411, 412
BseBI	CCWGG	2 cut(s)	9, 156
BseGI	GGATG	1 cut(s)	309
BseLI	CCNNNNNNNGG	3 cut(s)	155, 411, 412
BseMII	CTCAG	4 cut(s)	36, 202, 250, 574
BseRI	GAGGAG	4 cut(s)	138, 141, 277, 437
BseSI	GKGCMC	1 cut(s)	543
BseXI	GCAGC	1 cut(s)	501
Bsh1236I	CGCG	2 cut(s)	301, 408
BshFI	GGCC	2 cut(s)	159, 554
BslFI	GGGAC	1 cut(s)	388
BslI	CCNNNNNNNGG	3 cut(s)	155, 411, 412
BsmFI	GGGAC	1 cut(s)	388
BsmI	GAATGC	1 cut(s)	433
BsnI	GGCC	2 cut(s)	159, 554
Bsp119I	TTCGAA	2 cut(s)	39, 58
Bsp1286I	GDGCHC	1 cut(s)	543
Bsp143I	GATC	2 cut(s)	15, 296
BspACI	CCGC	4 cut(s)	288, 301, 349, 406
BspANI	GGCC	2 cut(s)	159, 554
BspCNI	CTCAG	4 cut(s)	35, 201, 249, 573
BspFNI	CGCG	2 cut(s)	301, 408
BspMAI	CTGCAG	1 cut(s)	483
BspMI	ACCTGC	2 cut(s)	331, 486
BspT104I	TTCGAA	2 cut(s)	39, 58
BsrBI	CCGCTC	1 cut(s)	290
BssMI	GATC	2 cut(s)	15, 296
Bst2UI	CCWGG	2 cut(s)	9, 156
Bst6I	CTCTTC	1 cut(s)	243
BstAPI	GCANNNNNTGC	1 cut(s)	346
BstBI	TTCGAA	2 cut(s)	39, 58
BstDEI	CTNAG	5 cut(s)	22, 188, 236, 353, 560
BstENI	CCTNNNNNAGG	1 cut(s)	153
BstF5I	GGATG	1 cut(s)	309
BstFNI	CGCG	2 cut(s)	301, 408
BstKTI	GATC	2 cut(s)	18, 299
BstMBI	GATC	2 cut(s)	15, 296
BstMWI	GCNNNNNNNGC	2 cut(s)	337, 346
BstNI	CCWGG	2 cut(s)	9, 156
BstSCI	CCNGG	2 cut(s)	7, 154
BstSFI	CTRYAG	1 cut(s)	479
BstSLI	GKGCMC	1 cut(s)	543
BstUI	CGCG	2 cut(s)	301, 408
BstV1I	GCAGC	1 cut(s)	501
BsuRI	GGCC	2 cut(s)	159, 554
BtsCI	GGATG	1 cut(s)	309
BveI	ACCTGC	2 cut(s)	331, 486
Cfr13I	GGNCC	1 cut(s)	553
CseI	GACGC	1 cut(s)	224
CviAII	CATG	2 cut(s)	82, 161
DdeI	CTNAG	5 cut(s)	22, 188, 236, 353, 560
DpnI	GATC	2 cut(s)	17, 298
DpnII	GATC	2 cut(s)	15, 296
Eam1104I	CTCTTC	1 cut(s)	243
EarI	CTCTTC	1 cut(s)	243
Eco32I	GATATC	1 cut(s)	273
Eco57I	CTGAAG	2 cut(s)	240, 502
EcoNI	CCTNNNNNAGG	1 cut(s)	153
EcoRII	CCWGG	2 cut(s)	7, 154
EcoRV	GATATC	1 cut(s)	273
FaeI	CATG	2 cut(s)	85, 164
FaiI	YATR	4 cut(s)	75, 83, 162, 503
FaqI	GGGAC	1 cut(s)	388
FatI	CATG	2 cut(s)	81, 160
FauI	CCCGC	1 cut(s)	413
Fnu4HI	GCNGC	2 cut(s)	350, 490
FokI	GGATG	1 cut(s)	316
Fsp4HI	GCNGC	2 cut(s)	350, 490
GluI	GCNGC	2 cut(s)	350, 490
GsuI	CTGGAG	3 cut(s)	138, 166, 184
HaeIII	GGCC	2 cut(s)	159, 554
HgaI	GACGC	1 cut(s)	224
Hin1II	CATG	2 cut(s)	85, 164
HinfI	GANTC	7 cut(s)	27, 41, 240, 284, 401, 446, 530
HphI	GGTGA	1 cut(s)	23
Hpy188III	TCNNGA	1 cut(s)	24
Hpy99I	CGWCG	3 cut(s)	215, 218, 329
HpyAV	CCTTC	2 cut(s)	467, 526
HpyCH4IV	ACGT	1 cut(s)	393
HpyCH4V	TGCA	3 cut(s)	85, 481, 546
HpyF10VI	GCNNNNNNNGC	2 cut(s)	337, 346
HpyF3I	CTNAG	5 cut(s)	22, 188, 236, 353, 560
HpySE526I	ACGT	1 cut(s)	393
Hsp92II	CATG	2 cut(s)	85, 164
Kzo9I	GATC	2 cut(s)	15, 296
Lsp1109I	GCAGC	1 cut(s)	501
LweI	GCATC	1 cut(s)	555
MaeII	ACGT	1 cut(s)	393
MalI	GATC	2 cut(s)	17, 298
MbiI	CCGCTC	1 cut(s)	290
MboI	GATC	2 cut(s)	15, 296
MboII	GAAGA	4 cut(s)	233, 260, 441, 455
MhlI	GDGCHC	1 cut(s)	543
MlyI	GAGTC	3 cut(s)	21, 249, 410
MmeI	TCCRAC	4 cut(s)	93, 234, 300, 477
MspR9I	CCNGG	2 cut(s)	9, 156
Mva1269I	GAATGC	1 cut(s)	433
MvaI	CCWGG	2 cut(s)	9, 156
MvnI	CGCG	2 cut(s)	301, 408
MwoI	GCNNNNNNNGC	2 cut(s)	337, 346
NdeII	GATC	2 cut(s)	15, 296
NlaIII	CATG	2 cut(s)	85, 164
NmeAIII	GCCGAG	1 cut(s)	412
NspV	TTCGAA	2 cut(s)	39, 58
PaqCI	CACCTGC	1 cut(s)	331
PctI	GAATGC	1 cut(s)	433
PfeI	GAWTC	4 cut(s)	41, 284, 446, 530
PkrI	GCNGC	2 cut(s)	351, 491
PleI	GAGTC	3 cut(s)	21, 248, 409
PpsI	GAGTC	3 cut(s)	21, 248, 409
Psp1406I	AACGTT	1 cut(s)	393
Psp6I	CCWGG	2 cut(s)	7, 154
PspGI	CCWGG	2 cut(s)	7, 154
PspPI	GGNCC	1 cut(s)	553
PstI	CTGCAG	1 cut(s)	483
SatI	GCNGC	2 cut(s)	350, 490
Sau3AI	GATC	2 cut(s)	15, 296
Sau96I	GGNCC	1 cut(s)	553
SchI	GAGTC	3 cut(s)	21, 249, 410
ScrFI	CCNGG	2 cut(s)	9, 156
SduI	GDGCHC	1 cut(s)	543
SfaNI	GCATC	1 cut(s)	555
SfcI	CTRYAG	1 cut(s)	479
SfuI	TTCGAA	2 cut(s)	39, 58
SmlI	CTYRAG	1 cut(s)	437
SmoI	CTYRAG	1 cut(s)	437
SsiI	CCGC	4 cut(s)	288, 301, 349, 406
StyD4I	CCNGG	2 cut(s)	7, 154
TaiI	ACGT	1 cut(s)	396
TaqI	TCGA	4 cut(s)	39, 58, 246, 324
TauI	GCSGC	1 cut(s)	352
TfiI	GAWTC	4 cut(s)	41, 284, 446, 530
TseI	GCWGC	1 cut(s)	489
TspDTI	ATGAA	1 cut(s)	70
XagI	CCTNNNNNAGG	1 cut(s)	153

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.