Rmu_sc0001464.1_g000012
BZIP Family

basic region leucin zipper

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001464.1
OG0012846
Physical Location & Seq
Forward (+)
50682 .. 51269
588 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001464.1_g000012.1.cds

Sequence Viewer

Length: 588 bp
atgctttctggtgagatttcaggaatccactacctgactacacctgaaatccaggttccaaatcctgcaaactttggcaatattatcatgcaggacaacataccgtccttccatttcaatggagcatcagtcttcagcaatttactccacactcaaatccctcctcctggacatgatcaattgttagctactccggtgcagtcctcgagtctcagcaacaactccagtacctccgatgaagcagaagaacacgtgcagcagctgagcaacatcattgatcaaagaaagcagaggagaatgatatcaaacagagaatcggctcgcagatcacggatgcggaaacagaagcacttggatgagctctggtcacaggtgcttcggcttagaaccgaaaaccacaacctgatggacaggttgaaccatgtgtccgagacccatgacagggttcttgaggagaatgcaaagctcaaggaagaagcctcggatcttcgacaaatgctctccgagatccagatcagcaccttgagatcgacagagctggaagtagaggcctgcagcacaactttaagcactgacttgctccgttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
bZIP_1

Protein Analysis

195

Amino Acids

22.25

Weight (kDa)

5.84

Isoelectric Point (pI)

63.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012846)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G13600 AT2G04038
fragaria_vesca FvH4_4g28780
malus_domestica MD13G1053800.v1.1 MD16G1052300.v1.1
prunus_persica Prupe.1G298200_v2.0.a1
pyrus_communis pycom13g04800 pycom16g04590
rosa_chinensis RchiOBHm_Chr4g0436911
rosa_laevigata RLG00000006488
rosa_multiflora Rmu_sc0001464.1_g000012
rosa_roxburghii Rroxscaffold_5G00377960
rosa_rugosa Rorug04G0297100
rosa_samantha Rh4AG351600 Rh4BG360400 Rh4CG374700 Rh4DG354800
rosa_wichuraiana Rw4G030770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 337
AclWI GGATC 2 cut(s) 492, 502
AcuI CTGAAG 1 cut(s) 118
AcvI CACGTG 1 cut(s) 253
AfaI GTAC 1 cut(s) 229
AfiI CCNNNNNNNGG 3 cut(s) 167, 441, 442
AflIII ACRYGT 1 cut(s) 250
AgsI TTSAA 2 cut(s) 118, 418
AjnI CCWGG 2 cut(s) 51, 166
AloI GAACNNNNNNTCC 2 cut(s) 410, 442
AluBI AGCT 5 cut(s) 188, 262, 361, 466, 538
AluI AGCT 5 cut(s) 188, 262, 361, 466, 538
Alw21I GWGCWC 1 cut(s) 363
Alw26I GTCTC 2 cut(s) 215, 425
AlwI GGATC 2 cut(s) 492, 502
AlwNI CAGNNNCTG 1 cut(s) 262
Ama87I CYCGRG 1 cut(s) 205
AoxI GGCC 1 cut(s) 549
ApeKI GCWGC 3 cut(s) 256, 259, 555
AsuHPI GGTGA 1 cut(s) 23
AvaI CYCGRG 1 cut(s) 205
BaeI ACNNNNGTAYC 2 cut(s) 211, 244
BanII GRGCYC 1 cut(s) 363
BbrPI CACGTG 1 cut(s) 253
BbsI GAAGAC 1 cut(s) 124
Bbv12I GWGCWC 1 cut(s) 363
BbvI GCAGC 3 cut(s) 268, 271, 567
BccI CCATC 1 cut(s) 400
BciT130I CCWGG 2 cut(s) 53, 168
BclI TGATCA 2 cut(s) 175, 277
BcoDI GTCTC 2 cut(s) 215, 425
BfmI CTRYAG 1 cut(s) 553
BisI GCNGC 3 cut(s) 257, 260, 556
BlpI GCTNAGC 1 cut(s) 263
BlsI GCNGC 3 cut(s) 258, 261, 557
Bme1390I CCNGG 2 cut(s) 53, 168
BmeT110I CYCGRG 1 cut(s) 205
BmiI GGNNCC 1 cut(s) 57
BmrFI CCNGG 2 cut(s) 53, 168
BmsI GCATC 2 cut(s) 134, 324
BpiI GAAGAC 1 cut(s) 124
BpmI CTGGAG 1 cut(s) 208
Bpu1102I GCTNAGC 1 cut(s) 263
BpuEI CTTGAG 3 cut(s) 452, 470, 544
BsaAI YACGTR 1 cut(s) 253
BsaBI GATNNNNATC 1 cut(s) 512
BsaI GGTCTC 1 cut(s) 425
BsaJI CCNNGG 1 cut(s) 480
BsaWI WCCGGW 1 cut(s) 193
BsaXI ACNNNNNCTCC 2 cut(s) 114, 144
Bsc4I CCNNNNNNNGG 3 cut(s) 167, 441, 442
Bse1I ACTGG 1 cut(s) 225
Bse8I GATNNNNATC 1 cut(s) 512
BseBI CCWGG 2 cut(s) 53, 168
BseDI CCNNGG 1 cut(s) 480
BseGI GGATG 2 cut(s) 339, 361
BseJI GATNNNNATC 1 cut(s) 512
BseLI CCNNNNNNNGG 3 cut(s) 167, 441, 442
BseMII CTCAG 2 cut(s) 226, 254
BseNI ACTGG 1 cut(s) 225
BseRI GAGGAG 3 cut(s) 153, 307, 467
BseXI GCAGC 3 cut(s) 268, 271, 567
BsgI GTGCAG 2 cut(s) 218, 275
BshFI GGCC 1 cut(s) 551
BsiHKAI GWGCWC 1 cut(s) 363
BsiHKCI CYCGRG 1 cut(s) 205
BsiSI CCGG 1 cut(s) 194
BslI CCNNNNNNNGG 3 cut(s) 167, 441, 442
BsmAI GTCTC 2 cut(s) 215, 425
BsmI GAATGC 1 cut(s) 463
BsnI GGCC 1 cut(s) 551
Bso31I GGTCTC 1 cut(s) 425
BsoBI CYCGRG 1 cut(s) 205
Bsp1286I GDGCHC 1 cut(s) 363
Bsp143I GATC 7 cut(s) 175, 277, 326, 484, 507, 513, 527
Bsp1720I GCTNAGC 1 cut(s) 263
BspACI CCGC 1 cut(s) 337
BspANI GGCC 1 cut(s) 551
BspCNI CTCAG 2 cut(s) 225, 255
BspLI GGNNCC 1 cut(s) 57
BspMAI CTGCAG 1 cut(s) 557
BspPI GGATC 2 cut(s) 492, 502
BspTNI GGTCTC 1 cut(s) 425
BsrI ACTGG 1 cut(s) 225
BssECI CCNNGG 1 cut(s) 480
BssMI GATC 7 cut(s) 175, 277, 326, 484, 507, 513, 527
Bst2UI CCWGG 2 cut(s) 53, 168
Bst4CI ACNGT 1 cut(s) 105
BstBAI YACGTR 1 cut(s) 253
BstC8I GCNNGC 2 cut(s) 322, 553
BstDEI CTNAG 3 cut(s) 212, 263, 383
BstF5I GGATG 2 cut(s) 339, 361
BstKTI GATC 7 cut(s) 178, 280, 329, 487, 510, 516, 530
BstMAI GTCTC 2 cut(s) 215, 425
BstMBI GATC 7 cut(s) 175, 277, 326, 484, 507, 513, 527
BstNI CCWGG 2 cut(s) 53, 168
BstSCI CCNGG 2 cut(s) 51, 166
BstSFI CTRYAG 1 cut(s) 553
BstV1I GCAGC 3 cut(s) 268, 271, 567
BstV2I GAAGAC 1 cut(s) 124
BstX2I RGATCY 2 cut(s) 484, 507
BstXI CCANNNNNNTGG 1 cut(s) 119
BstYI RGATCY 2 cut(s) 484, 507
BsuRI GGCC 1 cut(s) 551
BtsCI GGATG 2 cut(s) 339, 361
BtsIMutI CAGTG 1 cut(s) 570
Cac8I GCNNGC 2 cut(s) 322, 553
CaiI CAGNNNCTG 1 cut(s) 262
Csp6I GTAC 1 cut(s) 228
CviAII CATG 4 cut(s) 88, 173, 422, 437
CviJI RGCY 9 cut(s) 188, 262, 320, 361, 382, 466, 479, 538, 551
CviKI_1 RGCY 9 cut(s) 188, 262, 320, 361, 382, 466, 479, 538, 551
CviQI GTAC 1 cut(s) 228
DdeI CTNAG 3 cut(s) 212, 263, 383
DpnI GATC 7 cut(s) 177, 279, 328, 486, 509, 515, 529
DpnII GATC 7 cut(s) 175, 277, 326, 484, 507, 513, 527
Ecl136II GAGCTC 1 cut(s) 361
Eco147I AGGCCT 1 cut(s) 551
Eco24I GRGCYC 1 cut(s) 363
Eco31I GGTCTC 1 cut(s) 425
Eco32I GATATC 1 cut(s) 303
Eco53kI GAGCTC 1 cut(s) 361
Eco57I CTGAAG 1 cut(s) 118
Eco72I CACGTG 1 cut(s) 253
Eco88I CYCGRG 1 cut(s) 205
EcoICRI GAGCTC 1 cut(s) 361
EcoRII CCWGG 2 cut(s) 51, 166
EcoRV GATATC 1 cut(s) 303
EcoT38I GRGCYC 1 cut(s) 363
FaeI CATG 4 cut(s) 91, 176, 425, 440
FaiI YATR 5 cut(s) 89, 101, 174, 423, 438
FatI CATG 4 cut(s) 87, 172, 421, 436
FbaI TGATCA 2 cut(s) 175, 277
Fnu4HI GCNGC 3 cut(s) 257, 260, 556
FokI GGATG 2 cut(s) 346, 368
FriOI GRGCYC 1 cut(s) 363
Fsp4HI GCNGC 3 cut(s) 257, 260, 556
GluI GCNGC 3 cut(s) 257, 260, 556
GsuI CTGGAG 1 cut(s) 208
HaeIII GGCC 1 cut(s) 551
HapII CCGG 1 cut(s) 194
Hin1II CATG 4 cut(s) 91, 176, 425, 440
HinfI GANTC 3 cut(s) 24, 208, 314
HpaII CCGG 1 cut(s) 194
HphI GGTGA 1 cut(s) 23
Hpy188I TCNGA 4 cut(s) 235, 430, 484, 505
Hpy188III TCNNGA 3 cut(s) 21, 449, 511
HpyAV CCTTC 1 cut(s) 118
HpyCH4III ACNGT 1 cut(s) 105
HpyCH4IV ACGT 1 cut(s) 252
HpyCH4V TGCA 6 cut(s) 68, 91, 199, 256, 461, 555
HpyF3I CTNAG 3 cut(s) 212, 263, 383
HpySE526I ACGT 1 cut(s) 252
Hsp92II CATG 4 cut(s) 91, 176, 425, 440
Ksp22I TGATCA 2 cut(s) 175, 277
Kzo9I GATC 7 cut(s) 175, 277, 326, 484, 507, 513, 527
LmnI GCTCC 2 cut(s) 122, 585
Lsp1109I GCAGC 3 cut(s) 268, 271, 567
LweI GCATC 2 cut(s) 134, 324
MaeII ACGT 1 cut(s) 252
MaeIII GTNAC 1 cut(s) 366
MalI GATC 7 cut(s) 177, 279, 328, 486, 509, 515, 529
MboI GATC 7 cut(s) 175, 277, 326, 484, 507, 513, 527
MboII GAAGA 4 cut(s) 124, 257, 479, 485
MfeI CAATTG 1 cut(s) 179
MflI RGATCY 2 cut(s) 484, 507
MhlI GDGCHC 1 cut(s) 363
MluCI AATT 2 cut(s) 139, 179
MlyI GAGTC 1 cut(s) 217
MnlI CCTC 8 cut(s) 171, 174, 214, 241, 285, 445, 490, 541
MseI TTAA 1 cut(s) 566
MslI CAYNNNNRTG 2 cut(s) 117, 354
MspA1I CMGCKG 1 cut(s) 262
MspI CCGG 1 cut(s) 194
MspR9I CCNGG 2 cut(s) 53, 168
MunI CAATTG 1 cut(s) 179
Mva1269I GAATGC 1 cut(s) 463
MvaI CCWGG 2 cut(s) 53, 168
NdeII GATC 7 cut(s) 175, 277, 326, 484, 507, 513, 527
NlaIII CATG 4 cut(s) 91, 176, 425, 440
NlaIV GGNNCC 1 cut(s) 57
NmuCI GTSAC 1 cut(s) 366
PaeR7I CTCGAG 1 cut(s) 205
PceI AGGCCT 1 cut(s) 551
PctI GAATGC 1 cut(s) 463
PfeI GAWTC 2 cut(s) 24, 314
PfoI TCCNGGA 1 cut(s) 166
PkrI GCNGC 3 cut(s) 258, 261, 557
PleI GAGTC 1 cut(s) 216
PmaCI CACGTG 1 cut(s) 253
PmlI CACGTG 1 cut(s) 253
PpsI GAGTC 1 cut(s) 216
Ppu21I YACGTR 1 cut(s) 253
Psp124BI GAGCTC 1 cut(s) 363
Psp6I CCWGG 2 cut(s) 51, 166
PspCI CACGTG 1 cut(s) 253
PspGI CCWGG 2 cut(s) 51, 166
PspN4I GGNNCC 1 cut(s) 57
PspXI VCTCGAGB 1 cut(s) 205
PstI CTGCAG 1 cut(s) 557
PstNI CAGNNNCTG 1 cut(s) 262
PsuI RGATCY 2 cut(s) 484, 507
PvuII CAGCTG 1 cut(s) 262
RsaI GTAC 1 cut(s) 229
RsaNI GTAC 1 cut(s) 228
RseI CAYNNNNRTG 2 cut(s) 117, 354
SacI GAGCTC 1 cut(s) 363
SaqAI TTAA 1 cut(s) 566
SatI GCNGC 3 cut(s) 257, 260, 556
Sau3AI GATC 7 cut(s) 175, 277, 326, 484, 507, 513, 527
SchI GAGTC 1 cut(s) 217
ScrFI CCNGG 2 cut(s) 53, 168
SduI GDGCHC 1 cut(s) 363
SfaNI GCATC 2 cut(s) 134, 324
SfcI CTRYAG 1 cut(s) 553
Sfr274I CTCGAG 1 cut(s) 205
SlaI CTCGAG 1 cut(s) 205
SmiMI CAYNNNNRTG 2 cut(s) 117, 354
SmlI CTYRAG 4 cut(s) 205, 449, 467, 523
SmoI CTYRAG 4 cut(s) 205, 449, 467, 523
Sse9I AATT 2 cut(s) 139, 179
SseBI AGGCCT 1 cut(s) 551
SsiI CCGC 1 cut(s) 337
SspI AATATT 1 cut(s) 82
SstI GAGCTC 1 cut(s) 363
StuI AGGCCT 1 cut(s) 551
StyD4I CCNGG 2 cut(s) 51, 166
TaaI ACNGT 1 cut(s) 105
TaiI ACGT 1 cut(s) 255
TaqI TCGA 3 cut(s) 206, 490, 530
TasI AATT 2 cut(s) 139, 179
TfiI GAWTC 2 cut(s) 24, 314
Tru1I TTAA 1 cut(s) 566
Tru9I TTAA 1 cut(s) 566
TscAI CASTG 1 cut(s) 577
TseFI GTSAC 1 cut(s) 366
TseI GCWGC 3 cut(s) 256, 259, 555
Tsp45I GTSAC 1 cut(s) 366
TspDTI ATGAA 1 cut(s) 252
TspGWI ACGGA 2 cut(s) 346, 572
TspRI CASTG 1 cut(s) 577
XhoI CTCGAG 1 cut(s) 205
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.