Rh4DG354800
BZIP Family

basic region leucin zipper

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0012846
Physical Location & Seq
Reverse (-)
57597908 .. 57600317
2410 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG354800.1

Sequence Viewer

Length: 591 bp
ATGCTTTCTGGTGAGATTTCAGGAATCCACTACCTGACTACACCTGAAATCCAGGTTCCAAATCCTGCAAACTTTGGCAATATTATCATGCAGGACAACATACCGTCCTCCTTCCATTTCAATGGAGCATCAGTCTTCAGCAACTTACTCCACACTCAAATCCCTCCTCCGGGACATGATCAATTGTTAGCTACTCCGGTGCAGTCCTCGAGTCTCAGCAACAACTCCAGTACCTCCGATGAAGCCGAAGAACACGTGCAGCAGCTGGGCAACATCATTGATCAAAGAAAGCAGAGGAGAATGATATCAAACAGAGAATCGGCTCGCAGATCACGGATGCGGAAACAGAAGCACTTGGATGAGCTCTGGTCACAGGTGCTTCGGCTTAGAACCGAAAACCACAACCTGATGGACAGGTTGAACCATGTGTCCGAGACCCATGACAGGGTTCTTGAGGAGAATGCAAAGCTCAAGGAAGAAGCCTCGGATCTTCGACAAATGCTCTCCGAGATCCAGATCAGCACCTTGAGATCGACAGAGCTGGAAGTAGAGGCCTGCAGCACAACTTTAAGCACTGACTTGCTCCGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
bZIP_1

Protein Analysis

196

Amino Acids

22.3

Weight (kDa)

5.84

Isoelectric Point (pI)

63.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
bZIP_2 PF07716 94 - 140 2.3e-07 Basic region leucine zipper
bZIP_1 PF00170 96 - 154 5.5e-12 bZIP transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012846)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G13600 AT2G04038
fragaria_vesca FvH4_4g28780
malus_domestica MD13G1053800.v1.1 MD16G1052300.v1.1
prunus_persica Prupe.1G298200_v2.0.a1
pyrus_communis pycom13g04800 pycom16g04590
rosa_chinensis RchiOBHm_Chr4g0436911
rosa_laevigata RLG00000006488
rosa_multiflora Rmu_sc0001464.1_g000012
rosa_roxburghii Rroxscaffold_5G00377960
rosa_rugosa Rorug04G0297100
rosa_samantha Rh4AG351600 Rh4BG360400 Rh4CG374700 Rh4DG354800
rosa_wichuraiana Rw4G030770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 340
AclWI GGATC 2 cut(s) 495, 505
AcuI CTGAAG 1 cut(s) 121
AcvI CACGTG 1 cut(s) 256
AfaI GTAC 1 cut(s) 232
AfiI CCNNNNNNNGG 4 cut(s) 169, 170, 444, 445
AflIII ACRYGT 1 cut(s) 253
AgsI TTSAA 2 cut(s) 121, 421
AjnI CCWGG 1 cut(s) 51
AloI GAACNNNNNNTCC 2 cut(s) 413, 445
AluBI AGCT 5 cut(s) 191, 265, 364, 469, 541
AluI AGCT 5 cut(s) 191, 265, 364, 469, 541
Alw21I GWGCWC 1 cut(s) 366
Alw26I GTCTC 2 cut(s) 218, 428
AlwI GGATC 2 cut(s) 495, 505
AlwNI CAGNNNCTG 1 cut(s) 265
Ama87I CYCGRG 1 cut(s) 208
AoxI GGCC 1 cut(s) 552
ApeKI GCWGC 3 cut(s) 259, 262, 558
AsuC2I CCSGG 1 cut(s) 171
AsuHPI GGTGA 1 cut(s) 23
AvaI CYCGRG 1 cut(s) 208
BaeI ACNNNNGTAYC 2 cut(s) 214, 247
BanII GRGCYC 1 cut(s) 366
BbrPI CACGTG 1 cut(s) 256
BbsI GAAGAC 1 cut(s) 127
Bbv12I GWGCWC 1 cut(s) 366
BbvI GCAGC 3 cut(s) 271, 274, 570
BccI CCATC 1 cut(s) 403
BciT130I CCWGG 1 cut(s) 53
BclI TGATCA 2 cut(s) 178, 280
BcnI CCSGG 1 cut(s) 171
BcoDI GTCTC 2 cut(s) 218, 428
BfmI CTRYAG 1 cut(s) 556
BisI GCNGC 3 cut(s) 260, 263, 559
BlsI GCNGC 3 cut(s) 261, 264, 560
Bme1390I CCNGG 2 cut(s) 53, 171
BmeT110I CYCGRG 1 cut(s) 208
BmiI GGNNCC 1 cut(s) 57
BmrFI CCNGG 2 cut(s) 53, 171
BmsI GCATC 2 cut(s) 137, 327
BpiI GAAGAC 1 cut(s) 127
BpmI CTGGAG 1 cut(s) 211
BpuEI CTTGAG 3 cut(s) 455, 473, 547
BpuMI CCSGG 1 cut(s) 171
BsaAI YACGTR 1 cut(s) 256
BsaBI GATNNNNATC 1 cut(s) 515
BsaI GGTCTC 1 cut(s) 428
BsaJI CCNNGG 1 cut(s) 483
BsaWI WCCGGW 1 cut(s) 196
BsaXI ACNNNNNCTCC 2 cut(s) 117, 147
Bsc4I CCNNNNNNNGG 4 cut(s) 169, 170, 444, 445
Bse1I ACTGG 1 cut(s) 228
Bse8I GATNNNNATC 1 cut(s) 515
BseBI CCWGG 1 cut(s) 53
BseDI CCNNGG 1 cut(s) 483
BseGI GGATG 2 cut(s) 342, 364
BseJI GATNNNNATC 1 cut(s) 515
BseLI CCNNNNNNNGG 4 cut(s) 169, 170, 444, 445
BseMII CTCAG 1 cut(s) 229
BseNI ACTGG 1 cut(s) 228
BseRI GAGGAG 3 cut(s) 156, 310, 470
BseXI GCAGC 3 cut(s) 271, 274, 570
BseYI CCCAGC 1 cut(s) 265
BsgI GTGCAG 2 cut(s) 221, 278
BshFI GGCC 1 cut(s) 554
BsiHKAI GWGCWC 1 cut(s) 366
BsiHKCI CYCGRG 1 cut(s) 208
BsiSI CCGG 2 cut(s) 170, 197
BslFI GGGAC 1 cut(s) 186
BslI CCNNNNNNNGG 4 cut(s) 169, 170, 444, 445
BsmAI GTCTC 2 cut(s) 218, 428
BsmFI GGGAC 1 cut(s) 186
BsmI GAATGC 1 cut(s) 466
BsnI GGCC 1 cut(s) 554
Bso31I GGTCTC 1 cut(s) 428
BsoBI CYCGRG 1 cut(s) 208
Bsp1286I GDGCHC 1 cut(s) 366
Bsp143I GATC 7 cut(s) 178, 280, 329, 487, 510, 516, 530
BspACI CCGC 1 cut(s) 340
BspANI GGCC 1 cut(s) 554
BspCNI CTCAG 1 cut(s) 228
BspLI GGNNCC 1 cut(s) 57
BspMAI CTGCAG 1 cut(s) 560
BspPI GGATC 2 cut(s) 495, 505
BspTNI GGTCTC 1 cut(s) 428
BsrI ACTGG 1 cut(s) 228
BssECI CCNNGG 1 cut(s) 483
BssMI GATC 7 cut(s) 178, 280, 329, 487, 510, 516, 530
Bst2UI CCWGG 1 cut(s) 53
Bst4CI ACNGT 1 cut(s) 105
BstBAI YACGTR 1 cut(s) 256
BstC8I GCNNGC 2 cut(s) 325, 556
BstDEI CTNAG 2 cut(s) 215, 386
BstF5I GGATG 2 cut(s) 342, 364
BstKTI GATC 7 cut(s) 181, 283, 332, 490, 513, 519, 533
BstMAI GTCTC 2 cut(s) 218, 428
BstMBI GATC 7 cut(s) 178, 280, 329, 487, 510, 516, 530
BstNI CCWGG 1 cut(s) 53
BstSCI CCNGG 2 cut(s) 51, 169
BstSFI CTRYAG 1 cut(s) 556
BstV1I GCAGC 3 cut(s) 271, 274, 570
BstV2I GAAGAC 1 cut(s) 127
BstX2I RGATCY 2 cut(s) 487, 510
BstXI CCANNNNNNTGG 1 cut(s) 122
BstYI RGATCY 2 cut(s) 487, 510
BsuRI GGCC 1 cut(s) 554
BtsCI GGATG 2 cut(s) 342, 364
BtsIMutI CAGTG 1 cut(s) 573
Cac8I GCNNGC 2 cut(s) 325, 556
CaiI CAGNNNCTG 1 cut(s) 265
Csp6I GTAC 1 cut(s) 231
CviAII CATG 4 cut(s) 88, 176, 425, 440
CviQI GTAC 1 cut(s) 231
DdeI CTNAG 2 cut(s) 215, 386
DpnI GATC 7 cut(s) 180, 282, 331, 489, 512, 518, 532
DpnII GATC 7 cut(s) 178, 280, 329, 487, 510, 516, 530
Ecl136II GAGCTC 1 cut(s) 364
Eco147I AGGCCT 1 cut(s) 554
Eco24I GRGCYC 1 cut(s) 366
Eco31I GGTCTC 1 cut(s) 428
Eco32I GATATC 1 cut(s) 306
Eco53kI GAGCTC 1 cut(s) 364
Eco57I CTGAAG 1 cut(s) 121
Eco72I CACGTG 1 cut(s) 256
Eco88I CYCGRG 1 cut(s) 208
EcoICRI GAGCTC 1 cut(s) 364
EcoRII CCWGG 1 cut(s) 51
EcoRV GATATC 1 cut(s) 306
EcoT38I GRGCYC 1 cut(s) 366
FaeI CATG 4 cut(s) 91, 179, 428, 443
FaiI YATR 5 cut(s) 89, 101, 177, 426, 441
FaqI GGGAC 1 cut(s) 186
FatI CATG 4 cut(s) 87, 175, 424, 439
FbaI TGATCA 2 cut(s) 178, 280
Fnu4HI GCNGC 3 cut(s) 260, 263, 559
FokI GGATG 2 cut(s) 349, 371
FriOI GRGCYC 1 cut(s) 366
Fsp4HI GCNGC 3 cut(s) 260, 263, 559
GluI GCNGC 3 cut(s) 260, 263, 559
GsaI CCCAGC 1 cut(s) 269
GsuI CTGGAG 1 cut(s) 211
HaeIII GGCC 1 cut(s) 554
HapII CCGG 2 cut(s) 170, 197
Hin1II CATG 4 cut(s) 91, 179, 428, 443
HinfI GANTC 3 cut(s) 24, 211, 317
HpaII CCGG 2 cut(s) 170, 197
HphI GGTGA 1 cut(s) 23
Hpy188I TCNGA 4 cut(s) 238, 433, 487, 508
Hpy188III TCNNGA 3 cut(s) 21, 452, 514
HpyAV CCTTC 1 cut(s) 121
HpyCH4III ACNGT 1 cut(s) 105
HpyCH4IV ACGT 1 cut(s) 255
HpyCH4V TGCA 6 cut(s) 68, 91, 202, 259, 464, 558
HpyF3I CTNAG 2 cut(s) 215, 386
HpySE526I ACGT 1 cut(s) 255
Hsp92II CATG 4 cut(s) 91, 179, 428, 443
Ksp22I TGATCA 2 cut(s) 178, 280
Kzo9I GATC 7 cut(s) 178, 280, 329, 487, 510, 516, 530
LmnI GCTCC 2 cut(s) 125, 588
Lsp1109I GCAGC 3 cut(s) 271, 274, 570
LweI GCATC 2 cut(s) 137, 327
MaeII ACGT 1 cut(s) 255
MaeIII GTNAC 1 cut(s) 369
MalI GATC 7 cut(s) 180, 282, 331, 489, 512, 518, 532
MboI GATC 7 cut(s) 178, 280, 329, 487, 510, 516, 530
MboII GAAGA 4 cut(s) 127, 260, 482, 488
MfeI CAATTG 1 cut(s) 182
MflI RGATCY 2 cut(s) 487, 510
MhlI GDGCHC 1 cut(s) 366
MluCI AATT 1 cut(s) 182
MlyI GAGTC 1 cut(s) 220
MnlI CCTC 9 cut(s) 118, 174, 177, 217, 244, 288, 448, 493, 544
MseI TTAA 1 cut(s) 569
MslI CAYNNNNRTG 2 cut(s) 120, 357
MspA1I CMGCKG 1 cut(s) 265
MspI CCGG 2 cut(s) 170, 197
MspR9I CCNGG 2 cut(s) 53, 171
MunI CAATTG 1 cut(s) 182
Mva1269I GAATGC 1 cut(s) 466
MvaI CCWGG 1 cut(s) 53
NciI CCSGG 1 cut(s) 171
NdeII GATC 7 cut(s) 178, 280, 329, 487, 510, 516, 530
NlaIII CATG 4 cut(s) 91, 179, 428, 443
NlaIV GGNNCC 1 cut(s) 57
NmuCI GTSAC 1 cut(s) 369
PaeR7I CTCGAG 1 cut(s) 208
PceI AGGCCT 1 cut(s) 554
PctI GAATGC 1 cut(s) 466
PfeI GAWTC 2 cut(s) 24, 317
PfoI TCCNGGA 1 cut(s) 169
PkrI GCNGC 3 cut(s) 261, 264, 560
PleI GAGTC 1 cut(s) 219
PmaCI CACGTG 1 cut(s) 256
PmlI CACGTG 1 cut(s) 256
PpsI GAGTC 1 cut(s) 219
Ppu21I YACGTR 1 cut(s) 256
Psp124BI GAGCTC 1 cut(s) 366
Psp6I CCWGG 1 cut(s) 51
PspCI CACGTG 1 cut(s) 256
PspFI CCCAGC 1 cut(s) 265
PspGI CCWGG 1 cut(s) 51
PspN4I GGNNCC 1 cut(s) 57
PspXI VCTCGAGB 1 cut(s) 208
PstI CTGCAG 1 cut(s) 560
PstNI CAGNNNCTG 1 cut(s) 265
PsuI RGATCY 2 cut(s) 487, 510
PvuII CAGCTG 1 cut(s) 265
RsaI GTAC 1 cut(s) 232
RsaNI GTAC 1 cut(s) 231
RseI CAYNNNNRTG 2 cut(s) 120, 357
SacI GAGCTC 1 cut(s) 366
SaqAI TTAA 1 cut(s) 569
SatI GCNGC 3 cut(s) 260, 263, 559
Sau3AI GATC 7 cut(s) 178, 280, 329, 487, 510, 516, 530
SchI GAGTC 1 cut(s) 220
ScrFI CCNGG 2 cut(s) 53, 171
SduI GDGCHC 1 cut(s) 366
SfaNI GCATC 2 cut(s) 137, 327
SfcI CTRYAG 1 cut(s) 556
Sfr274I CTCGAG 1 cut(s) 208
SlaI CTCGAG 1 cut(s) 208
SmiMI CAYNNNNRTG 2 cut(s) 120, 357
SmlI CTYRAG 4 cut(s) 208, 452, 470, 526
SmoI CTYRAG 4 cut(s) 208, 452, 470, 526
Sse9I AATT 1 cut(s) 182
SseBI AGGCCT 1 cut(s) 554
SsiI CCGC 1 cut(s) 340
SspI AATATT 1 cut(s) 82
SstI GAGCTC 1 cut(s) 366
StuI AGGCCT 1 cut(s) 554
StyD4I CCNGG 2 cut(s) 51, 169
TaaI ACNGT 1 cut(s) 105
TaiI ACGT 1 cut(s) 258
TaqI TCGA 3 cut(s) 209, 493, 533
TasI AATT 1 cut(s) 182
TfiI GAWTC 2 cut(s) 24, 317
Tru1I TTAA 1 cut(s) 569
Tru9I TTAA 1 cut(s) 569
TscAI CASTG 1 cut(s) 580
TseFI GTSAC 1 cut(s) 369
TseI GCWGC 3 cut(s) 259, 262, 558
Tsp45I GTSAC 1 cut(s) 369
TspDTI ATGAA 1 cut(s) 255
TspGWI ACGGA 2 cut(s) 349, 575
TspRI CASTG 1 cut(s) 580
XhoI CTCGAG 1 cut(s) 208
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.