MD13G1053800.v1.1
BZIP Family

basic region leucin zipper

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
OG0012846
Physical Location & Seq
Reverse (-)
3790226 .. 3790840
615 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1053800.v1.1.491

Sequence Viewer

Length: 615 bp
ATGCTTCCAGGTGAGATCATTTCAGGACTCCACTACTTTGAACCTGAAATCCCACTTCCAAATCCCTCTGACTTTGCCTTCATGCAGAACCAAATTCCCTCCCTCCATTTCAACACTTCGTTCAACAACTTATCCCGTCAAATCGCTCCTCCTATAGGCCATGACTTCACTCAACAATCCTCCAGCCTCAGCAACAACTCCAGCACCTCTGACGACGCCGAAGAACACCACCACCTCAGAGTCATCGACGAGAGGAAGCATAGGAGAATGATATCCAACAGAGAATCAGCCCGTAGATCGCGGATGAGGAAGCAGAAGCACCTCGACGAGCTCTGGTCGCAGGTGGTCCGGCTGAGGAATGAGAACCACAGCCTGATAGACAGGTTGAACAACCTTTCGGAGTCCCACGACATGGTTGTGGAGGAGAATGCTCGGCTCAAGGAAGAAGCTTGTGACCTTCGCCAAATGCTCACAAACCTGCAGATTGGCAGCCCTTACAATATAAATGCTTCTACCTTCAGAGAGCTGGAGGGAGAGGTGCCCTGCAACACGGCTCATCTCAGAGCCGAGTCATCGAACCAATCCATCGCTGCATCGGCCGATTTGCTCCATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
bZIP_1

Protein Analysis

205

Amino Acids

23.4

Weight (kDa)

5.93

Isoelectric Point (pI)

60.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
bZIP_2 PF07716 83 - 132 5.3e-09 Basic region leucine zipper
bZIP_1 PF00170 85 - 135 2e-13 bZIP transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012846)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G13600 AT2G04038
fragaria_vesca FvH4_4g28780
malus_domestica MD13G1053800.v1.1 MD16G1052300.v1.1
prunus_persica Prupe.1G298200_v2.0.a1
pyrus_communis pycom13g04800 pycom16g04590
rosa_chinensis RchiOBHm_Chr4g0436911
rosa_laevigata RLG00000006488
rosa_multiflora Rmu_sc0001464.1_g000012
rosa_roxburghii Rroxscaffold_5G00377960
rosa_rugosa Rorug04G0297100
rosa_samantha Rh4AG351600 Rh4BG360400 Rh4CG374700 Rh4DG354800
rosa_wichuraiana Rw4G030770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 331
Acc36I ACCTGC 2 cut(s) 331, 486
AccB1I GGYRCC 1 cut(s) 538
AccB7I CCANNNNNTGG 1 cut(s) 412
AccII CGCG 1 cut(s) 301
AciI CCGC 1 cut(s) 301
AcoI YGGCCR 1 cut(s) 597
AcsI RAATTY 1 cut(s) 93
AcuI CTGAAG 1 cut(s) 502
AcyI GRCGYC 1 cut(s) 216
AfiI CCNNNNNNNGG 2 cut(s) 155, 412
AgsI TTSAA 4 cut(s) 41, 112, 124, 388
AjnI CCWGG 1 cut(s) 7
AloI GAACNNNNNNTCC 2 cut(s) 33, 65
AluBI AGCT 3 cut(s) 331, 449, 526
AluI AGCT 3 cut(s) 331, 449, 526
Alw21I GWGCWC 1 cut(s) 333
AoxI GGCC 2 cut(s) 157, 597
ApeKI GCWGC 2 cut(s) 489, 590
ApoI RAATTY 1 cut(s) 93
AspS9I GGNCC 1 cut(s) 346
AsuHPI GGTGA 1 cut(s) 23
AvaII GGWCC 1 cut(s) 346
BaeGI GKGCMC 1 cut(s) 543
BanI GGYRCC 1 cut(s) 538
BanII GRGCYC 1 cut(s) 333
Bbv12I GWGCWC 1 cut(s) 333
BbvCI CCTCAGC 2 cut(s) 188, 353
BbvI GCAGC 2 cut(s) 501, 577
BccI CCATC 1 cut(s) 593
BceAI ACGGC 1 cut(s) 567
BciT130I CCWGG 1 cut(s) 9
BfmI CTRYAG 2 cut(s) 153, 479
BfuAI ACCTGC 2 cut(s) 331, 486
BisI GCNGC 2 cut(s) 490, 591
BlsI GCNGC 2 cut(s) 491, 592
Bme1390I CCNGG 1 cut(s) 9
Bme18I GGWCC 1 cut(s) 346
BmgT120I GGNCC 1 cut(s) 346
BmiI GGNNCC 1 cut(s) 540
BmrFI CCNGG 1 cut(s) 9
BmsI GCATC 1 cut(s) 602
BpmI CTGGAG 3 cut(s) 166, 184, 548
Bpu10I CCTNAGC 2 cut(s) 188, 353
BpuEI CTTGAG 1 cut(s) 422
BsaHI GRCGYC 1 cut(s) 216
Bsc4I CCNNNNNNNGG 2 cut(s) 155, 412
BseBI CCWGG 1 cut(s) 9
BseGI GGATG 1 cut(s) 309
BseLI CCNNNNNNNGG 2 cut(s) 155, 412
BseMII CTCAG 4 cut(s) 202, 250, 344, 574
BseRI GAGGAG 2 cut(s) 138, 437
BseSI GKGCMC 1 cut(s) 543
BseX3I CGGCCG 1 cut(s) 597
BseXI GCAGC 2 cut(s) 501, 577
Bsh1236I CGCG 1 cut(s) 301
Bsh1285I CGRYCG 1 cut(s) 600
BshFI GGCC 2 cut(s) 159, 599
BshNI GGYRCC 1 cut(s) 538
BsiEI CGRYCG 1 cut(s) 600
BsiHKAI GWGCWC 1 cut(s) 333
BsiSI CCGG 1 cut(s) 349
BslFI GGGAC 1 cut(s) 388
BslI CCNNNNNNNGG 2 cut(s) 155, 412
BsmFI GGGAC 1 cut(s) 388
BsmI GAATGC 1 cut(s) 433
BsnI GGCC 2 cut(s) 159, 599
Bsp1286I GDGCHC 2 cut(s) 333, 543
Bsp143I GATC 2 cut(s) 15, 296
BspACI CCGC 1 cut(s) 301
BspANI GGCC 2 cut(s) 159, 599
BspCNI CTCAG 4 cut(s) 201, 249, 345, 573
BspFNI CGCG 1 cut(s) 301
BspLI GGNNCC 1 cut(s) 540
BspMAI CTGCAG 1 cut(s) 483
BspMI ACCTGC 2 cut(s) 331, 486
BspT107I GGYRCC 1 cut(s) 538
BssMI GATC 2 cut(s) 15, 296
BssNI GRCGYC 1 cut(s) 216
Bst2UI CCWGG 1 cut(s) 9
BstACI GRCGYC 1 cut(s) 216
BstDEI CTNAG 4 cut(s) 188, 236, 353, 560
BstENI CCTNNNNNAGG 1 cut(s) 153
BstF5I GGATG 1 cut(s) 309
BstFNI CGCG 1 cut(s) 301
BstKTI GATC 2 cut(s) 18, 299
BstMBI GATC 2 cut(s) 15, 296
BstMCI CGRYCG 1 cut(s) 600
BstMWI GCNNNNNNNGC 2 cut(s) 337, 596
BstNI CCWGG 1 cut(s) 9
BstSCI CCNGG 1 cut(s) 7
BstSFI CTRYAG 2 cut(s) 153, 479
BstSLI GKGCMC 1 cut(s) 543
BstUI CGCG 1 cut(s) 301
BstV1I GCAGC 2 cut(s) 501, 577
BstZI CGGCCG 1 cut(s) 597
BsuRI GGCC 2 cut(s) 159, 599
BtgZI GCGATG 1 cut(s) 571
BtsCI GGATG 1 cut(s) 309
BveI ACCTGC 2 cut(s) 331, 486
Cfr13I GGNCC 1 cut(s) 346
CseI GACGC 1 cut(s) 224
CviAII CATG 3 cut(s) 82, 161, 412
DdeI CTNAG 4 cut(s) 188, 236, 353, 560
DpnI GATC 2 cut(s) 17, 298
DpnII GATC 2 cut(s) 15, 296
EaeI YGGCCR 1 cut(s) 597
EagI CGGCCG 1 cut(s) 597
Ecl136II GAGCTC 1 cut(s) 331
EclXI CGGCCG 1 cut(s) 597
Eco24I GRGCYC 1 cut(s) 333
Eco32I GATATC 1 cut(s) 273
Eco47I GGWCC 1 cut(s) 346
Eco52I CGGCCG 1 cut(s) 597
Eco53kI GAGCTC 1 cut(s) 331
Eco57I CTGAAG 1 cut(s) 502
EcoICRI GAGCTC 1 cut(s) 331
EcoNI CCTNNNNNAGG 1 cut(s) 153
EcoRII CCWGG 1 cut(s) 7
EcoRV GATATC 1 cut(s) 273
EcoT38I GRGCYC 1 cut(s) 333
FaeI CATG 3 cut(s) 85, 164, 415
FaiI YATR 6 cut(s) 83, 155, 162, 261, 413, 503
FaqI GGGAC 1 cut(s) 388
FatI CATG 3 cut(s) 81, 160, 411
Fnu4HI GCNGC 2 cut(s) 490, 591
FokI GGATG 1 cut(s) 316
FriOI GRGCYC 1 cut(s) 333
Fsp4HI GCNGC 2 cut(s) 490, 591
GluI GCNGC 2 cut(s) 490, 591
GsuI CTGGAG 3 cut(s) 166, 184, 548
HaeIII GGCC 2 cut(s) 159, 599
HapII CCGG 1 cut(s) 349
HgaI GACGC 1 cut(s) 224
Hin1I GRCGYC 1 cut(s) 216
Hin1II CATG 3 cut(s) 85, 164, 415
HindIII AAGCTT 1 cut(s) 447
HinfI GANTC 5 cut(s) 27, 240, 284, 401, 569
HpaII CCGG 1 cut(s) 349
HphI GGTGA 1 cut(s) 23
Hpy188I TCNGA 6 cut(s) 70, 211, 239, 400, 521, 563
Hpy188III TCNNGA 1 cut(s) 24
Hpy99I CGWCG 3 cut(s) 218, 251, 329
HpyAV CCTTC 3 cut(s) 88, 467, 526
HpyCH4V TGCA 4 cut(s) 85, 481, 546, 593
HpyF10VI GCNNNNNNNGC 2 cut(s) 337, 596
HpyF3I CTNAG 4 cut(s) 188, 236, 353, 560
Hsp92I GRCGYC 1 cut(s) 216
Hsp92II CATG 3 cut(s) 85, 164, 415
Kzo9I GATC 2 cut(s) 15, 296
LmnI GCTCC 2 cut(s) 151, 612
Lsp1109I GCAGC 2 cut(s) 501, 577
LweI GCATC 1 cut(s) 602
MaeIII GTNAC 1 cut(s) 452
MalI GATC 2 cut(s) 17, 298
MboI GATC 2 cut(s) 15, 296
MboII GAAGA 2 cut(s) 233, 455
MhlI GDGCHC 2 cut(s) 333, 543
MluCI AATT 1 cut(s) 93
MlyI GAGTC 4 cut(s) 21, 249, 410, 578
MmeI TCCRAC 1 cut(s) 300
MseI TTAA 1 cut(s) 613
MslI CAYNNNNRTG 1 cut(s) 416
MspI CCGG 1 cut(s) 349
MspR9I CCNGG 1 cut(s) 9
Mva1269I GAATGC 1 cut(s) 433
MvaI CCWGG 1 cut(s) 9
MvnI CGCG 1 cut(s) 301
MwoI GCNNNNNNNGC 2 cut(s) 337, 596
NdeII GATC 2 cut(s) 15, 296
NlaIII CATG 3 cut(s) 85, 164, 415
NlaIV GGNNCC 1 cut(s) 540
NmeAIII GCCGAG 2 cut(s) 412, 592
NmuCI GTSAC 1 cut(s) 452
PaqCI CACCTGC 1 cut(s) 331
PctI GAATGC 1 cut(s) 433
PfeI GAWTC 1 cut(s) 284
PflMI CCANNNNNTGG 1 cut(s) 412
PkrI GCNGC 2 cut(s) 491, 592
PleI GAGTC 4 cut(s) 21, 248, 409, 577
PpsI GAGTC 4 cut(s) 21, 248, 409, 577
Psp124BI GAGCTC 1 cut(s) 333
Psp6I CCWGG 1 cut(s) 7
PspGI CCWGG 1 cut(s) 7
PspN4I GGNNCC 1 cut(s) 540
PspPI GGNCC 1 cut(s) 346
PstI CTGCAG 1 cut(s) 483
RseI CAYNNNNRTG 1 cut(s) 416
SacI GAGCTC 1 cut(s) 333
SaqAI TTAA 1 cut(s) 613
SatI GCNGC 2 cut(s) 490, 591
Sau3AI GATC 2 cut(s) 15, 296
Sau96I GGNCC 1 cut(s) 346
SchI GAGTC 4 cut(s) 21, 249, 410, 578
ScrFI CCNGG 1 cut(s) 9
SduI GDGCHC 2 cut(s) 333, 543
SfaNI GCATC 1 cut(s) 602
SfcI CTRYAG 2 cut(s) 153, 479
SinI GGWCC 1 cut(s) 346
SmiMI CAYNNNNRTG 1 cut(s) 416
SmlI CTYRAG 1 cut(s) 437
SmoI CTYRAG 1 cut(s) 437
Sse9I AATT 1 cut(s) 93
SsiI CCGC 1 cut(s) 301
SstI GAGCTC 1 cut(s) 333
StyD4I CCNGG 1 cut(s) 7
TaqI TCGA 3 cut(s) 246, 324, 575
TasI AATT 1 cut(s) 93
TfiI GAWTC 1 cut(s) 284
Tru1I TTAA 1 cut(s) 613
Tru9I TTAA 1 cut(s) 613
TseFI GTSAC 1 cut(s) 452
TseI GCWGC 2 cut(s) 489, 590
Tsp45I GTSAC 1 cut(s) 452
TspDTI ATGAA 1 cut(s) 70
Van91I CCANNNNNTGG 1 cut(s) 412
VpaK11BI GGWCC 1 cut(s) 346
XagI CCTNNNNNAGG 1 cut(s) 153
XapI RAATTY 1 cut(s) 93
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.