AT1G14410

single-stranded DNA-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0009517
Physical Location & Seq
Reverse (-)
4928921 .. 4931080
2160 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G14410.1

Sequence Viewer

Length: 792 bp
ATGTCGCAACTCTTATCGACTCCTCTAATGGCGGTCAACTCCAATCCTCGCTTTCTCTCTTCGTCTTCAGTACTCGTCACCGGAGGTTTTGCAGTGAAACGGCATGGATTCGCCTTGAAACCGACGACGAAGACGGTGAAGCTCTTCTCGGTTAAGTCTCGCCAGACGGATTACTTCGAGAAGCAGAGGTTCGGTGACTCTTCTTCTTCTCCTTCACCTGCTGAAGGATTGCCTGCTAGATTTTACGTGGGTCATTCGATATACAAAGGGAAAGCTGCGTTAACAGTGGACCCAAGAGCACCAGAGTTTGTGGCTTTAGACTCTGGAGCTTTCAAGTTGTCAAAAGATGGTTTCTTATTGCTCCAGTTTGCTCCTTCTGCTGGTGTACGACAATATGATTGGAGCAAGAAACAGGTGTTCTCATTGTCTGTTACAGAAATTGGAACTCTAGTTAGCCTAGGCCCGAGGGAATCTTGTGAATTCTTCCATGATCCATTCAAGGGGAAAAGTGATGAGGGAAAAGTAAGGAAAGTGTTGAAAGTTGAGCCTCTCCCAGATGGTTCTGGTCATTTCTTCAACCTAAGTGTTCAAAACAAGCTTGTGAATGTGGATGAGAGCATTTACATACCAATTACTCGAGCAGAGTTTGCTGTTCTTATCTCTGCATTCAATTTTGTCTTGCCTTACCTTATAGGCTGGCATGCATTTGCAAACTCCATCAAACCAGAAGAGACAAGCCGTGTGAACAACGCTTCGCCTAACTATGGAGGAGACTATGAATGGAATAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000018 GO:0000229 GO:0003674 GO:0003676 GO:0003677 GO:0003697 GO:0003700 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005694 GO:0005737 GO:0006139 GO:0006259 GO:0006281 GO:0006355 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006974 GO:0008150 GO:0008152 GO:0009295 GO:0009507 GO:0009508 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009607 GO:0009620 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010628 GO:0010639 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0032204 GO:0032205 GO:0032210 GO:0032211 GO:0033043 GO:0033044 GO:0033554 GO:0034641 GO:0042162 GO:0042646 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043565 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045893 GO:0045910 GO:0045934 GO:0045935 GO:0046483 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051052 GO:0051053 GO:0051128 GO:0051129 GO:0051171 GO:0051172 GO:0051173 GO:0051252 GO:0051254 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0065008 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0098542 GO:0140110 GO:1901360 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:1904356 GO:1904357 GO:2000112 GO:2000113 GO:2000278 GO:2000279 GO:2001141 GO:2001251
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Whirly

Protein Analysis

263

Amino Acids

29.06

Weight (kDa)

9.38

Isoelectric Point (pI)

37.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Whirly PF08536 87 - 221 8e-62 Whirly transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0009517)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G14410 AT2G02740
fragaria_vesca FvH4_4g31850 FvH4_4g31850
malus_domestica MD13G1078000.v1.1 MD16G1077800.v1.1
prunus_persica Prupe.1G269100_v2.0.a1
pyrus_communis pycom16g06720
rosa_chinensis RchiOBHm_Chr4g0440511
rosa_laevigata RLG00000006175
rosa_multiflora Rmu_sc0007648.1_g000008
rosa_roxburghii Rroxscaffold_5G00381340
rosa_rugosa Rorug04G0326400
rosa_samantha Rh4AG378000 Rh4BG390600 Rh4CG405300 Rh4DG384300 Rh5DG089700
rosa_wichuraiana Rw0G019510 Rw4G032300 Rw4G032350 Rw4G032450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 226
Acc36I ACCTGC 1 cut(s) 226
AciI CCGC 1 cut(s) 32
AclWI GGATC 1 cut(s) 485
AcsI RAATTY 1 cut(s) 479
AcuI CTGAAG 2 cut(s) 51, 243
AfaI GTAC 2 cut(s) 72, 387
AfiI CCNNNNNNNGG 4 cut(s) 224, 380, 500, 764
AgsI TTSAA 7 cut(s) 118, 334, 499, 538, 577, 590, 670
AluBI AGCT 4 cut(s) 142, 275, 329, 598
AluI AGCT 4 cut(s) 142, 275, 329, 598
Alw21I GWGCWC 1 cut(s) 301
Alw26I GTCTC 3 cut(s) 162, 725, 765
AlwI GGATC 1 cut(s) 485
Ama87I CYCGRG 2 cut(s) 463, 636
AoxI GGCC 1 cut(s) 460
ApeKI GCWGC 1 cut(s) 275
ApoI RAATTY 1 cut(s) 479
Asp700I GAANNNNTTC 1 cut(s) 143
AspA2I CCTAGG 1 cut(s) 457
AspS9I GGNCC 2 cut(s) 289, 461
AsuHPI GGTGA 4 cut(s) 70, 148, 206, 207
AvaI CYCGRG 2 cut(s) 463, 636
AvaII GGWCC 1 cut(s) 289
AvrII CCTAGG 1 cut(s) 457
BbsI GAAGAC 2 cut(s) 57, 137
Bbv12I GWGCWC 1 cut(s) 301
BbvI GCAGC 1 cut(s) 262
BccI CCATC 3 cut(s) 341, 551, 725
BceAI ACGGC 2 cut(s) 116, 723
BcoDI GTCTC 3 cut(s) 162, 725, 765
BfaI CTAG 3 cut(s) 237, 449, 458
BfuAI ACCTGC 1 cut(s) 226
BisI GCNGC 1 cut(s) 276
BlnI CCTAGG 1 cut(s) 457
BlsI GCNGC 1 cut(s) 277
BmcAI AGTACT 1 cut(s) 72
Bme18I GGWCC 1 cut(s) 289
BmeT110I CYCGRG 2 cut(s) 463, 636
BmgT120I GGNCC 2 cut(s) 289, 461
BmiI GGNNCC 1 cut(s) 291
BpiI GAAGAC 2 cut(s) 57, 137
BpmI CTGGAG 2 cut(s) 345, 347
BsaAI YACGTR 1 cut(s) 247
BsaJI CCNNGG 2 cut(s) 457, 464
BsaWI WCCGGW 1 cut(s) 80
Bsc4I CCNNNNNNNGG 4 cut(s) 224, 380, 500, 764
Bse1I ACTGG 1 cut(s) 364
BseDI CCNNGG 2 cut(s) 457, 464
BseGI GGATG 1 cut(s) 616
BseLI CCNNNNNNNGG 4 cut(s) 224, 380, 500, 764
BseNI ACTGG 1 cut(s) 364
BseRI GAGGAG 2 cut(s) 12, 783
BseXI GCAGC 1 cut(s) 262
BshFI GGCC 1 cut(s) 462
BsiHKAI GWGCWC 1 cut(s) 301
BsiHKCI CYCGRG 2 cut(s) 463, 636
BsiSI CCGG 1 cut(s) 81
BslI CCNNNNNNNGG 4 cut(s) 224, 380, 500, 764
BsmAI GTCTC 3 cut(s) 162, 725, 765
BsmI GAATGC 1 cut(s) 665
BsnI GGCC 1 cut(s) 462
BsoBI CYCGRG 2 cut(s) 463, 636
Bsp1286I GDGCHC 1 cut(s) 301
Bsp143I GATC 1 cut(s) 490
BspACI CCGC 1 cut(s) 32
BspANI GGCC 1 cut(s) 462
BspLI GGNNCC 1 cut(s) 291
BspMI ACCTGC 1 cut(s) 226
BspPI GGATC 1 cut(s) 485
BspQI GCTCTTC 1 cut(s) 149
BsrI ACTGG 1 cut(s) 364
BssECI CCNNGG 2 cut(s) 457, 464
BssMI GATC 1 cut(s) 490
BssT1I CCWWGG 1 cut(s) 457
Bst4CI ACNGT 2 cut(s) 136, 286
Bst6I CTCTTC 4 cut(s) 64, 149, 205, 723
BstAPI GCANNNNNTGC 1 cut(s) 647
BstBAI YACGTR 1 cut(s) 247
BstC8I GCNNGC 3 cut(s) 234, 698, 702
BstDEI CTNAG 1 cut(s) 581
BstENI CCTNNNNNAGG 1 cut(s) 222
BstF5I GGATG 1 cut(s) 616
BstKTI GATC 1 cut(s) 493
BstMAI GTCTC 3 cut(s) 162, 725, 765
BstMBI GATC 1 cut(s) 490
BstMWI GCNNNNNNNGC 2 cut(s) 377, 647
BstNSI RCATGY 1 cut(s) 704
BstV1I GCAGC 1 cut(s) 262
BstV2I GAAGAC 2 cut(s) 57, 137
BsuRI GGCC 1 cut(s) 462
BtsCI GGATG 1 cut(s) 616
BtsI GCAGTG 1 cut(s) 99
BtsIMutI CAGTG 2 cut(s) 99, 291
BveI ACCTGC 1 cut(s) 226
Cac8I GCNNGC 3 cut(s) 234, 698, 702
Cfr13I GGNCC 2 cut(s) 289, 461
Csp6I GTAC 2 cut(s) 71, 386
CviAII CATG 3 cut(s) 104, 488, 701
CviQI GTAC 2 cut(s) 71, 386
DdeI CTNAG 1 cut(s) 581
DpnI GATC 1 cut(s) 492
DpnII GATC 1 cut(s) 490
Eam1104I CTCTTC 4 cut(s) 64, 149, 205, 723
EarI CTCTTC 4 cut(s) 64, 149, 205, 723
Eco130I CCWWGG 1 cut(s) 457
Eco47I GGWCC 1 cut(s) 289
Eco57I CTGAAG 2 cut(s) 51, 243
Eco88I CYCGRG 2 cut(s) 463, 636
EcoNI CCTNNNNNAGG 1 cut(s) 222
EcoRI GAATTC 1 cut(s) 479
EcoT14I CCWWGG 1 cut(s) 457
EcoT22I ATGCAT 1 cut(s) 706
ErhI CCWWGG 1 cut(s) 457
FaeI CATG 3 cut(s) 107, 491, 704
FaiI YATR 9 cut(s) 105, 262, 396, 489, 626, 692, 702, 765, 777
FatI CATG 3 cut(s) 103, 487, 700
Fnu4HI GCNGC 1 cut(s) 276
FokI GGATG 1 cut(s) 623
Fsp4HI GCNGC 1 cut(s) 276
FspBI CTAG 3 cut(s) 237, 449, 458
GluI GCNGC 1 cut(s) 276
GsuI CTGGAG 2 cut(s) 345, 347
HaeIII GGCC 1 cut(s) 462
HapII CCGG 1 cut(s) 81
Hin1II CATG 3 cut(s) 107, 491, 704
HincII GTYRAC 2 cut(s) 37, 282
HindII GTYRAC 2 cut(s) 37, 282
HindIII AAGCTT 1 cut(s) 596
HinfI GANTC 5 cut(s) 19, 108, 197, 320, 470
HpaI GTTAAC 1 cut(s) 282
HpaII CCGG 1 cut(s) 81
HphI GGTGA 4 cut(s) 70, 148, 206, 207
Hpy166II GTNNAC 5 cut(s) 37, 282, 289, 386, 745
Hpy188III TCNNGA 2 cut(s) 178, 324
Hpy8I GTNNAC 5 cut(s) 37, 282, 289, 386, 745
Hpy99I CGWCG 2 cut(s) 127, 130
HpyAV CCTTC 3 cut(s) 218, 222, 384
HpyCH4III ACNGT 2 cut(s) 136, 286
HpyCH4IV ACGT 1 cut(s) 246
HpyCH4V TGCA 4 cut(s) 92, 665, 704, 710
HpyF10VI GCNNNNNNNGC 2 cut(s) 377, 647
HpyF3I CTNAG 1 cut(s) 581
HpySE526I ACGT 1 cut(s) 246
Hsp92II CATG 3 cut(s) 107, 491, 704
KspAI GTTAAC 1 cut(s) 282
Kzo9I GATC 1 cut(s) 490
LguI GCTCTTC 1 cut(s) 149
LmnI GCTCC 4 cut(s) 326, 366, 376, 402
Lsp1109I GCAGC 1 cut(s) 262
MaeI CTAG 3 cut(s) 237, 449, 458
MaeII ACGT 1 cut(s) 246
MaeIII GTNAC 3 cut(s) 76, 194, 430
MalI GATC 1 cut(s) 492
MboI GATC 1 cut(s) 490
MhlI GDGCHC 1 cut(s) 301
MluCI AATT 4 cut(s) 438, 479, 630, 670
MlyI GAGTC 3 cut(s) 13, 191, 314
MnlI CCTC 8 cut(s) 33, 57, 77, 180, 459, 508, 558, 761
Mph1103I ATGCAT 1 cut(s) 706
MroXI GAANNNNTTC 1 cut(s) 143
MseI TTAA 2 cut(s) 153, 281
MspI CCGG 1 cut(s) 81
Mva1269I GAATGC 1 cut(s) 665
MwoI GCNNNNNNNGC 2 cut(s) 377, 647
NdeII GATC 1 cut(s) 490
NlaIII CATG 3 cut(s) 107, 491, 704
NlaIV GGNNCC 1 cut(s) 291
NmuCI GTSAC 2 cut(s) 76, 194
NsiI ATGCAT 1 cut(s) 706
NspI RCATGY 1 cut(s) 704
PaeI GCATGC 1 cut(s) 704
PaeR7I CTCGAG 1 cut(s) 636
PaqCI CACCTGC 1 cut(s) 226
PciSI GCTCTTC 1 cut(s) 149
PctI GAATGC 1 cut(s) 665
PdmI GAANNNNTTC 1 cut(s) 143
PfeI GAWTC 2 cut(s) 108, 470
PkrI GCNGC 1 cut(s) 277
PleI GAGTC 3 cut(s) 13, 191, 314
PpsI GAGTC 3 cut(s) 13, 191, 314
Ppu21I YACGTR 1 cut(s) 247
PspN4I GGNNCC 1 cut(s) 291
PspPI GGNCC 2 cut(s) 289, 461
PspXI VCTCGAGB 1 cut(s) 636
RsaI GTAC 2 cut(s) 72, 387
RsaNI GTAC 2 cut(s) 71, 386
SapI GCTCTTC 1 cut(s) 149
SaqAI TTAA 2 cut(s) 153, 281
SatI GCNGC 1 cut(s) 276
Sau3AI GATC 1 cut(s) 490
Sau96I GGNCC 2 cut(s) 289, 461
ScaI AGTACT 1 cut(s) 72
SchI GAGTC 3 cut(s) 13, 191, 314
SduI GDGCHC 1 cut(s) 301
Sfr274I CTCGAG 1 cut(s) 636
SinI GGWCC 1 cut(s) 289
SlaI CTCGAG 1 cut(s) 636
SmlI CTYRAG 1 cut(s) 636
SmoI CTYRAG 1 cut(s) 636
SphI GCATGC 1 cut(s) 704
Sse9I AATT 4 cut(s) 438, 479, 630, 670
SsiI CCGC 1 cut(s) 32
SspMI CTAG 3 cut(s) 237, 449, 458
StyI CCWWGG 1 cut(s) 457
TaaI ACNGT 2 cut(s) 136, 286
TaiI ACGT 1 cut(s) 249
TaqI TCGA 4 cut(s) 17, 177, 257, 637
TasI AATT 4 cut(s) 438, 479, 630, 670
TatI WGTACW 1 cut(s) 70
TfiI GAWTC 2 cut(s) 108, 470
Tru1I TTAA 2 cut(s) 153, 281
Tru9I TTAA 2 cut(s) 153, 281
TscAI CASTG 2 cut(s) 99, 291
TseFI GTSAC 2 cut(s) 76, 194
TseI GCWGC 1 cut(s) 275
Tsp45I GTSAC 2 cut(s) 76, 194
TspDTI ATGAA 1 cut(s) 792
TspGWI ACGGA 1 cut(s) 182
TspRI CASTG 2 cut(s) 99, 291
VpaK11BI GGWCC 1 cut(s) 289
XagI CCTNNNNNAGG 1 cut(s) 222
XapI RAATTY 1 cut(s) 479
XceI RCATGY 1 cut(s) 704
XhoI CTCGAG 1 cut(s) 636
XmaJI CCTAGG 1 cut(s) 457
XmnI GAANNNNTTC 1 cut(s) 143
XspI CTAG 3 cut(s) 237, 449, 458
ZrmI AGTACT 1 cut(s) 72
Zsp2I ATGCAT 1 cut(s) 706
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.