AT2G02740

single-stranded DNA-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0009517
Physical Location & Seq
Forward (+)
769334 .. 771235
1902 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G02740.1

Sequence Viewer

Length: 807 bp
ATGTCGCAGCTGTTATCTTCTCCTCCAATGGCGGTTTTCTCCAAAACCTTCATAAACCATAAGTTTTCAGATGCTCGTTTTCTCTCTTCTCACTCAATTCTCACCTCCGGTGGATTCGCCGGAAAAATTATTCCTTTAAAACCGACGGCGAGGTTGAAATTAACGGTGAAGTCTCGACAAAGTGATTACTTTGAGAAACAGAGGTTTGGTGACTCGTCTTCTTCGCAAAACGCTGAAGTATCTTCTCCTAGATTTTACGTGGGTCATTCGATTTACAAAGGGAAAGCTGCTCTTACGATAGAACCACGAGCACCAGAGTTTGTGGCTTTGGAATCTGGTGCGTTCAAGCTGACAAAGGAAGGTTTTTTGTTGCTCCAATTTGCTCCTGCAGCTGGTGTTCGTCAATATGATTGGAGTAGGAAGCAGGTCTTCTCGTTGTCGGTTACAGAAATCGGTAATCTAGTTAGCCTTGGGCCGAGGGAATCATGTGAATTCTTCCATGATCCATTCAAGGGAAAAGGTAGTGATGAAGGTAAAGTGAGGAAAGTGTTGAAAGTTGAGCCGCTCCCAGATGGTTCTGGCCGCTTCTTTAACCTGAGTGTTCAAAACAAGCTCTTGAATGTAGATGAGAGTGTATACATACCAATCACTAAAGCAGAGTTTGCTGTTCTTATCTCTGCTTTCAACTTCGTCTTGCCGCACCTTATAGGCTGGAGTGCATTTGCTAACTCCATCAAACCAGAAGACTCTAACCGCCTTAACAATGCTTCGCCTAAGTATGGAGGAGACTACGAATGGAGTAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000018 GO:0000229 GO:0003674 GO:0003676 GO:0003677 GO:0003697 GO:0003700 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005694 GO:0005737 GO:0006139 GO:0006259 GO:0006281 GO:0006355 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006974 GO:0008150 GO:0008152 GO:0009295 GO:0009507 GO:0009508 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009607 GO:0009620 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010628 GO:0010639 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0032204 GO:0032205 GO:0032210 GO:0032211 GO:0033043 GO:0033044 GO:0033554 GO:0034641 GO:0042162 GO:0042646 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043565 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045893 GO:0045910 GO:0045934 GO:0045935 GO:0046483 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051052 GO:0051053 GO:0051128 GO:0051129 GO:0051171 GO:0051172 GO:0051173 GO:0051252 GO:0051254 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0065008 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0098542 GO:0140110 GO:1901360 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:1904356 GO:1904357 GO:2000112 GO:2000113 GO:2000278 GO:2000279 GO:2001141 GO:2001251
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Whirly

Protein Analysis

268

Amino Acids

29.73

Weight (kDa)

9.54

Isoelectric Point (pI)

39.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Whirly PF08536 91 - 226 3.4e-59 Whirly transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0009517)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G14410 AT2G02740
fragaria_vesca FvH4_4g31850 FvH4_4g31850
malus_domestica MD13G1078000.v1.1 MD16G1077800.v1.1
prunus_persica Prupe.1G269100_v2.0.a1
pyrus_communis pycom16g06720
rosa_chinensis RchiOBHm_Chr4g0440511
rosa_laevigata RLG00000006175
rosa_multiflora Rmu_sc0007648.1_g000008
rosa_roxburghii Rroxscaffold_5G00381340
rosa_rugosa Rorug04G0326400
rosa_samantha Rh4AG378000 Rh4BG390600 Rh4CG405300 Rh4DG384300 Rh5DG089700
rosa_wichuraiana Rw0G019510 Rw4G032300 Rw4G032350 Rw4G032450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 415
AccBSI CCGCTC 1 cut(s) 565
AccI GTMKAC 1 cut(s) 636
AciI CCGC 5 cut(s) 32, 563, 583, 698, 754
AclWI GGATC 1 cut(s) 497
AcoI YGGCCR 1 cut(s) 580
AcsI RAATTY 1 cut(s) 491
AcuI CTGAAG 1 cut(s) 255
AfiI CCNNNNNNNGG 3 cut(s) 392, 512, 779
AgsI TTSAA 7 cut(s) 157, 346, 511, 553, 605, 619, 685
AluBI AGCT 5 cut(s) 10, 287, 349, 392, 613
AluI AGCT 5 cut(s) 10, 287, 349, 392, 613
Alw21I GWGCWC 1 cut(s) 313
Alw26I GTCTC 2 cut(s) 177, 780
AlwI GGATC 1 cut(s) 497
AoxI GGCC 2 cut(s) 473, 580
ApeKI GCWGC 3 cut(s) 7, 287, 389
ApoI RAATTY 1 cut(s) 491
AspS9I GGNCC 1 cut(s) 473
AsuHPI GGTGA 3 cut(s) 94, 178, 221
BauI CACGAG 1 cut(s) 306
BbsI GAAGAC 3 cut(s) 210, 421, 750
Bbv12I GWGCWC 1 cut(s) 313
BbvI GCAGC 3 cut(s) 19, 274, 401
BccI CCATC 2 cut(s) 566, 740
BceAI ACGGC 1 cut(s) 162
BcoDI GTCTC 2 cut(s) 177, 780
BfaI CTAG 2 cut(s) 249, 461
BfmI CTRYAG 1 cut(s) 387
BfuAI ACCTGC 1 cut(s) 415
BisI GCNGC 6 cut(s) 8, 288, 390, 563, 583, 698
BlsI GCNGC 6 cut(s) 9, 289, 391, 564, 584, 699
BmgT120I GGNCC 1 cut(s) 473
BmsI GCATC 1 cut(s) 61
BpiI GAAGAC 3 cut(s) 210, 421, 750
BpmI CTGGAG 1 cut(s) 733
BsaAI YACGTR 1 cut(s) 259
BsaJI CCNNGG 2 cut(s) 469, 476
BsaWI WCCGGW 1 cut(s) 107
Bsc4I CCNNNNNNNGG 3 cut(s) 392, 512, 779
BseDI CCNNGG 2 cut(s) 469, 476
BseLI CCNNNNNNNGG 3 cut(s) 392, 512, 779
BseMII CTCAG 1 cut(s) 587
BseRI GAGGAG 2 cut(s) 12, 798
BseXI GCAGC 3 cut(s) 19, 274, 401
BshFI GGCC 2 cut(s) 475, 582
BsiHKAI GWGCWC 1 cut(s) 313
BsiSI CCGG 2 cut(s) 108, 120
BslI CCNNNNNNNGG 3 cut(s) 392, 512, 779
BsmAI GTCTC 2 cut(s) 177, 780
BsnI GGCC 2 cut(s) 475, 582
Bsp1286I GDGCHC 1 cut(s) 313
Bsp143I GATC 1 cut(s) 502
BspACI CCGC 5 cut(s) 32, 563, 583, 698, 754
BspANI GGCC 2 cut(s) 475, 582
BspCNI CTCAG 1 cut(s) 588
BspMAI CTGCAG 1 cut(s) 391
BspMI ACCTGC 1 cut(s) 415
BspPI GGATC 1 cut(s) 497
BsrBI CCGCTC 1 cut(s) 565
BssECI CCNNGG 2 cut(s) 469, 476
BssMI GATC 1 cut(s) 502
BssNAI GTATAC 1 cut(s) 637
BssSI CACGAG 1 cut(s) 306
BssT1I CCWWGG 1 cut(s) 469
Bst1107I GTATAC 1 cut(s) 637
Bst2BI CACGAG 1 cut(s) 306
Bst4CI ACNGT 1 cut(s) 166
Bst6I CTCTTC 1 cut(s) 91
BstAPI GCANNNNNTGC 1 cut(s) 662
BstBAI YACGTR 1 cut(s) 259
BstDEI CTNAG 2 cut(s) 596, 774
BstKTI GATC 1 cut(s) 505
BstMAI GTCTC 2 cut(s) 177, 780
BstMBI GATC 1 cut(s) 502
BstMWI GCNNNNNNNGC 2 cut(s) 389, 662
BstSFI CTRYAG 1 cut(s) 387
BstV1I GCAGC 3 cut(s) 19, 274, 401
BstV2I GAAGAC 3 cut(s) 210, 421, 750
BstZ17I GTATAC 1 cut(s) 637
BsuRI GGCC 2 cut(s) 475, 582
BveI ACCTGC 1 cut(s) 415
Cfr13I GGNCC 1 cut(s) 473
CviAII CATG 2 cut(s) 486, 500
DdeI CTNAG 2 cut(s) 596, 774
DpnI GATC 1 cut(s) 504
DpnII GATC 1 cut(s) 502
DraI TTTAAA 1 cut(s) 138
EaeI YGGCCR 1 cut(s) 580
Eam1104I CTCTTC 1 cut(s) 91
EarI CTCTTC 1 cut(s) 91
Eco130I CCWWGG 1 cut(s) 469
Eco57I CTGAAG 1 cut(s) 255
EcoRI GAATTC 1 cut(s) 491
EcoT14I CCWWGG 1 cut(s) 469
ErhI CCWWGG 1 cut(s) 469
FaeI CATG 2 cut(s) 489, 503
FaiI YATR 9 cut(s) 53, 60, 408, 487, 501, 637, 641, 707, 780
FalI AAGNNNNNCTT 4 cut(s) 276, 308, 413, 445
FatI CATG 2 cut(s) 485, 499
FblI GTMKAC 1 cut(s) 636
Fnu4HI GCNGC 6 cut(s) 8, 288, 390, 563, 583, 698
Fsp4HI GCNGC 6 cut(s) 8, 288, 390, 563, 583, 698
FspBI CTAG 2 cut(s) 249, 461
GluI GCNGC 6 cut(s) 8, 288, 390, 563, 583, 698
GsuI CTGGAG 1 cut(s) 733
HaeIII GGCC 2 cut(s) 475, 582
HapII CCGG 2 cut(s) 108, 120
Hin1II CATG 2 cut(s) 489, 503
HinfI GANTC 5 cut(s) 114, 212, 332, 482, 746
HpaII CCGG 2 cut(s) 108, 120
HphI GGTGA 3 cut(s) 94, 178, 221
Hpy166II GTNNAC 1 cut(s) 637
Hpy188I TCNGA 1 cut(s) 70
Hpy188III TCNNGA 2 cut(s) 174, 616
Hpy8I GTNNAC 1 cut(s) 637
Hpy99I CGWCG 1 cut(s) 148
HpyAV CCTTC 3 cut(s) 58, 353, 524
HpyCH4III ACNGT 1 cut(s) 166
HpyCH4IV ACGT 1 cut(s) 258
HpyCH4V TGCA 2 cut(s) 389, 719
HpyF10VI GCNNNNNNNGC 2 cut(s) 389, 662
HpyF3I CTNAG 2 cut(s) 596, 774
HpySE526I ACGT 1 cut(s) 258
Hsp92II CATG 2 cut(s) 489, 503
Kzo9I GATC 1 cut(s) 502
LmnI GCTCC 3 cut(s) 378, 388, 570
Lsp1109I GCAGC 3 cut(s) 19, 274, 401
LweI GCATC 1 cut(s) 61
MaeI CTAG 2 cut(s) 249, 461
MaeII ACGT 1 cut(s) 258
MaeIII GTNAC 2 cut(s) 209, 442
MalI GATC 1 cut(s) 504
MbiI CCGCTC 1 cut(s) 565
MboI GATC 1 cut(s) 502
MboII GAAGA 8 cut(s) 9, 78, 210, 213, 234, 421, 487, 755
MhlI GDGCHC 1 cut(s) 313
MluCI AATT 5 cut(s) 96, 126, 158, 377, 491
MlyI GAGTC 2 cut(s) 206, 740
MnlI CCTC 7 cut(s) 33, 115, 144, 195, 471, 534, 776
MseI TTAA 4 cut(s) 137, 161, 591, 759
MspA1I CMGCKG 2 cut(s) 10, 392
MspI CCGG 2 cut(s) 108, 120
MwoI GCNNNNNNNGC 2 cut(s) 389, 662
NdeII GATC 1 cut(s) 502
NlaIII CATG 2 cut(s) 489, 503
NmeAIII GCCGAG 1 cut(s) 501
NmuCI GTSAC 1 cut(s) 209
PfeI GAWTC 3 cut(s) 114, 332, 482
PkrI GCNGC 6 cut(s) 9, 289, 391, 564, 584, 699
PleI GAGTC 2 cut(s) 206, 740
PpsI GAGTC 2 cut(s) 206, 740
Ppu21I YACGTR 1 cut(s) 259
PspPI GGNCC 1 cut(s) 473
PstI CTGCAG 1 cut(s) 391
PvuII CAGCTG 2 cut(s) 10, 392
SaqAI TTAA 4 cut(s) 137, 161, 591, 759
SatI GCNGC 6 cut(s) 8, 288, 390, 563, 583, 698
Sau3AI GATC 1 cut(s) 502
Sau96I GGNCC 1 cut(s) 473
SchI GAGTC 2 cut(s) 206, 740
SduI GDGCHC 1 cut(s) 313
SfaNI GCATC 1 cut(s) 61
SfcI CTRYAG 1 cut(s) 387
Sse9I AATT 5 cut(s) 96, 126, 158, 377, 491
SsiI CCGC 5 cut(s) 32, 563, 583, 698, 754
SspMI CTAG 2 cut(s) 249, 461
StyI CCWWGG 1 cut(s) 469
TaaI ACNGT 1 cut(s) 166
TaiI ACGT 1 cut(s) 261
TaqI TCGA 2 cut(s) 175, 269
TasI AATT 5 cut(s) 96, 126, 158, 377, 491
TauI GCSGC 3 cut(s) 565, 585, 700
TfiI GAWTC 3 cut(s) 114, 332, 482
Tru1I TTAA 4 cut(s) 137, 161, 591, 759
Tru9I TTAA 4 cut(s) 137, 161, 591, 759
TseFI GTSAC 1 cut(s) 209
TseI GCWGC 3 cut(s) 7, 287, 389
Tsp45I GTSAC 1 cut(s) 209
TspDTI ATGAA 2 cut(s) 40, 543
XapI RAATTY 1 cut(s) 491
XmiI GTMKAC 1 cut(s) 636
XspI CTAG 2 cut(s) 249, 461
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.