Rw4G032300

Single-stranded DNA-binding protein WHY1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0009517
Physical Location & Seq
Reverse (-)
59444553 .. 59444861
309 bp
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UTR
Exon/CDS
Intron
Rw4G032300.1

Sequence Viewer

Length: 309 bp
ATGGTTATATGGCATTTATTCAAGGTGTTCAAAACAAGCTTATCAACTTGGATGAGAACATTTATATTCCTGTCACCAAAGCGGAGTTTGTTGTTCTCAACTCCGCTTTCAATGTATGATCTCCACTCCTCTCCACTAATTTTGCTGAATTCTTGCCTGTTAGGACTCATATCCATGTGTTCTCTGCAATATATCTTGCCGTATCTCATAGGTTGGCATGCATATGCAAACTCTATAAAGCCAGAAGATATGAGCCGTGTGAATAACTCCACTCCTAGATATGGAGGAGACTTTGAATGGAGCTGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000018 GO:0000229 GO:0003674 GO:0003676 GO:0003677 GO:0003697 GO:0003700 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005694 GO:0005737 GO:0006139 GO:0006259 GO:0006281 GO:0006355 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006974 GO:0008150 GO:0008152 GO:0009295 GO:0009507 GO:0009508 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009607 GO:0009620 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010628 GO:0010639 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0032204 GO:0032205 GO:0032210 GO:0032211 GO:0033043 GO:0033044 GO:0033554 GO:0034641 GO:0042162 GO:0042646 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043565 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045893 GO:0045910 GO:0045934 GO:0045935 GO:0046483 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051052 GO:0051053 GO:0051128 GO:0051129 GO:0051171 GO:0051172 GO:0051173 GO:0051252 GO:0051254 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0065008 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0098542 GO:0140110 GO:1901360 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:1904356 GO:1904357 GO:2000112 GO:2000113 GO:2000278 GO:2000279 GO:2001141 GO:2001251
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Whirly

Protein Analysis

102

Amino Acids

11.91

Weight (kDa)

9.06

Isoelectric Point (pI)

56.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0009517)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G14410 AT2G02740
fragaria_vesca FvH4_4g31850 FvH4_4g31850
malus_domestica MD13G1078000.v1.1 MD16G1077800.v1.1
prunus_persica Prupe.1G269100_v2.0.a1
pyrus_communis pycom16g06720
rosa_chinensis RchiOBHm_Chr4g0440511
rosa_laevigata RLG00000006175
rosa_multiflora Rmu_sc0007648.1_g000008
rosa_roxburghii Rroxscaffold_5G00381340
rosa_rugosa Rorug04G0326400
rosa_samantha Rh4AG378000 Rh4BG390600 Rh4CG405300 Rh4DG384300 Rh5DG089700
rosa_wichuraiana Rw0G019510 Rw4G032300 Rw4G032350 Rw4G032450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 82, 104
AcsI RAATTY 1 cut(s) 148
AfiI CCNNNNNNNGG 1 cut(s) 281
AgsI TTSAA 4 cut(s) 22, 31, 111, 296
AluBI AGCT 2 cut(s) 39, 303
AluI AGCT 2 cut(s) 39, 303
Alw26I GTCTC 1 cut(s) 282
ApoI RAATTY 1 cut(s) 148
AsuHPI GGTGA 1 cut(s) 66
BceAI ACGGC 2 cut(s) 184, 240
BcoDI GTCTC 1 cut(s) 282
BfaI CTAG 1 cut(s) 276
Bsc4I CCNNNNNNNGG 1 cut(s) 281
BseGI GGATG 1 cut(s) 57
BseLI CCNNNNNNNGG 1 cut(s) 281
BseRI GAGGAG 2 cut(s) 118, 300
BslI CCNNNNNNNGG 1 cut(s) 281
BsmAI GTCTC 1 cut(s) 282
Bsp143I GATC 1 cut(s) 118
BspACI CCGC 2 cut(s) 82, 104
BssMI GATC 1 cut(s) 118
BstC8I GCNNGC 1 cut(s) 219
BstF5I GGATG 1 cut(s) 57
BstKTI GATC 1 cut(s) 121
BstMAI GTCTC 1 cut(s) 282
BstMBI GATC 1 cut(s) 118
BstNSI RCATGY 1 cut(s) 221
BtsCI GGATG 1 cut(s) 57
Cac8I GCNNGC 1 cut(s) 219
CspCI CAANNNNNGTGG 2 cut(s) 123, 158
CviAII CATG 2 cut(s) 175, 218
CviJI RGCY 4 cut(s) 39, 241, 255, 303
CviKI_1 RGCY 4 cut(s) 39, 241, 255, 303
DpnI GATC 1 cut(s) 120
DpnII GATC 1 cut(s) 118
EcoRI GAATTC 1 cut(s) 148
EcoT22I ATGCAT 1 cut(s) 223
FaeI CATG 2 cut(s) 178, 221
FatI CATG 2 cut(s) 174, 217
FauNDI CATATG 1 cut(s) 223
FokI GGATG 1 cut(s) 64
FspBI CTAG 1 cut(s) 276
Hin1II CATG 2 cut(s) 178, 221
HindIII AAGCTT 1 cut(s) 37
HinfI GANTC 1 cut(s) 165
HphI GGTGA 1 cut(s) 66
HpyCH4V TGCA 3 cut(s) 187, 221, 227
Hsp92II CATG 2 cut(s) 178, 221
Kzo9I GATC 1 cut(s) 118
LmnI GCTCC 1 cut(s) 300
LpnPI CCDG 4 cut(s) 83, 170, 255, 289
MaeI CTAG 1 cut(s) 276
MaeIII GTNAC 1 cut(s) 72
MalI GATC 1 cut(s) 120
MboI GATC 1 cut(s) 118
MboII GAAGA 1 cut(s) 257
MluCI AATT 2 cut(s) 138, 148
MlyI GAGTC 1 cut(s) 159
MnlI CCTC 2 cut(s) 139, 278
Mph1103I ATGCAT 1 cut(s) 223
MslI CAYNNNNRTG 2 cut(s) 173, 222
NdeI CATATG 1 cut(s) 223
NdeII GATC 1 cut(s) 118
NlaIII CATG 2 cut(s) 178, 221
NmuCI GTSAC 1 cut(s) 72
NsiI ATGCAT 1 cut(s) 223
NspI RCATGY 1 cut(s) 221
PaeI GCATGC 1 cut(s) 221
PleI GAGTC 1 cut(s) 159
PpsI GAGTC 1 cut(s) 159
RseI CAYNNNNRTG 2 cut(s) 173, 222
Sau3AI GATC 1 cut(s) 118
SchI GAGTC 1 cut(s) 159
SetI ASST 4 cut(s) 27, 41, 214, 305
SmiMI CAYNNNNRTG 2 cut(s) 173, 222
SphI GCATGC 1 cut(s) 221
Sse9I AATT 2 cut(s) 138, 148
SsiI CCGC 2 cut(s) 82, 104
SspMI CTAG 1 cut(s) 276
TasI AATT 2 cut(s) 138, 148
TseFI GTSAC 1 cut(s) 72
Tsp45I GTSAC 1 cut(s) 72
XapI RAATTY 1 cut(s) 148
XceI RCATGY 1 cut(s) 221
XspI CTAG 1 cut(s) 276
Zsp2I ATGCAT 1 cut(s) 223
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.