Rmu_sc0007648.1_g000008

Single-stranded DNA-binding protein WHY1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007648.1
OG0009517
Physical Location & Seq
Reverse (-)
29467 .. 34393
4927 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0007648.1_g000008.1.cds

Sequence Viewer

Length: 1533 bp
atgctgaagctagagtactcgctatcttccccggtggcggttcaaaaccctaaccactcccttccgagcaaagctagggttttcagcaccaatagctttgggttcgcccccaattcgacgtcgtttgggaagagacgactcgccttgaaatgtcgtcagtctgagtacttcgagcagcagaggctcactcccccaactcccccgagcaccgctgcttctgctgctcagagtccctccggagctactgcggtgccggctaggttttatgtgggacactcgatatacaaaggaaaggcggcgctcaccgtagagcccaaagctccagagtttacggctttagattcgggagcattcaaaatgtcgagggaaggctttgtgctacttcagtttgctcctgcagcaggtgtgcgtgtgtatgattggagcagaaagcaggtattttcgctatcagtgacagaaattggaagcatagtgagccttggtgcgagggagtcctgtgaatttttccatgacccctttaagggaaaaagtgaggaaggcaaggtcaggaaggtgttgaaggtggaacctcttccagatggatctggccgtttctttaacctaagtgttcaaaacaagcttatcaacttggacgagaacatttatattcctgtcaccagagcagagtttgctgttctcaactctgctttcaattatatcttgccgtatcttataggttggcatgcatatgcaaactctataaagtcagaagatatgagccgtgtgaataacgccactccgagatatggaggagactttgaatggagccgtaacagggagtatgaaacgctcatctgcgagtatctgaagagtaagggtgtgccggaagatgaacatcctgctgttgttgacaagctattcctggtggttgaggctgccgtctcccctgtggatgctgttgtagtgtttgtgtgggacgccatttaccgcgtcggagatggacatgaaccatataggcccaatgggattcctgcgagcagatcatcaatccaggtgcctggagatcaaccacacctgtcccctctgccgatacccaatgccaacagaagaagattaagccctgctcaacctgccaagatcaagagggagtatgaaacgctcatctgcgagtatctgaagagtaagggtgtgccggaagatgaacatcctgctgttgttgacaagctattcctggtggttgaggctgccgtctcccctgtggatgctgttgtagtgtttgtgtgggacgccatttaccgcgtcggagatggacatgaaccatataggcccaatgggattcctgcgagcagatcatcaatccagggtttggagcaagtgacactcgatactgatacctcgctctcctgtgctatttgtttggaggattttgagcaagaacccactacctggttgccctgcagacaccattttcatgtccattgcattgttcagtgcctggagatcaaccacacctgtcccctctgccgatacccaatgccaacagaagaagattaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000018 GO:0000229 GO:0003674 GO:0003676 GO:0003677 GO:0003697 GO:0003700 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005694 GO:0005737 GO:0006139 GO:0006259 GO:0006281 GO:0006355 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006974 GO:0008150 GO:0008152 GO:0009295 GO:0009507 GO:0009508 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009607 GO:0009620 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010628 GO:0010639 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0032204 GO:0032205 GO:0032210 GO:0032211 GO:0033043 GO:0033044 GO:0033554 GO:0034641 GO:0042162 GO:0042646 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043565 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045893 GO:0045910 GO:0045934 GO:0045935 GO:0046483 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051052 GO:0051053 GO:0051128 GO:0051129 GO:0051171 GO:0051172 GO:0051173 GO:0051252 GO:0051254 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0065008 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0098542 GO:0140110 GO:1901360 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:1904356 GO:1904357 GO:2000112 GO:2000113 GO:2000278 GO:2000279 GO:2001141 GO:2001251
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Whirly

Protein Analysis

510

Amino Acids

56.7

Weight (kDa)

6.19

Isoelectric Point (pI)

48.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0009517)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G14410 AT2G02740
fragaria_vesca FvH4_4g31850 FvH4_4g31850
malus_domestica MD13G1078000.v1.1 MD16G1077800.v1.1
prunus_persica Prupe.1G269100_v2.0.a1
pyrus_communis pycom16g06720
rosa_chinensis RchiOBHm_Chr4g0440511
rosa_laevigata RLG00000006175
rosa_multiflora Rmu_sc0007648.1_g000008
rosa_roxburghii Rroxscaffold_5G00381340
rosa_rugosa Rorug04G0326400
rosa_samantha Rh4AG378000 Rh4BG390600 Rh4CG405300 Rh4DG384300 Rh5DG089700
rosa_wichuraiana Rw0G019510 Rw4G032300 Rw4G032350 Rw4G032450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 392
AatII GACGTC 1 cut(s) 122
Acc36I ACCTGC 3 cut(s) 392, 424, 1117
AccB1I GGYRCC 2 cut(s) 250, 1033
AccB7I CCANNNNNTGG 2 cut(s) 1345, 1425
AccII CGCG 2 cut(s) 969, 1278
AccIII TCCGGA 1 cut(s) 236
AciI CCGC 6 cut(s) 38, 210, 248, 296, 967, 1276
AclWI GGATC 1 cut(s) 589
AcoI YGGCCR 1 cut(s) 586
AcsI RAATTY 1 cut(s) 500
AcuI CTGAAG 4 cut(s) 26, 368, 866, 1175
AcyI GRCGYC 3 cut(s) 119, 957, 1266
AfaI GTAC 2 cut(s) 17, 167
AfiI CCNNNNNNNGG 8 cut(s) 37, 401, 520, 521, 785, 814, 1345, 1425
AgsI TTSAA 7 cut(s) 44, 148, 355, 559, 611, 691, 800
AjnI CCWGG 7 cut(s) 900, 1029, 1036, 1209, 1338, 1424, 1473
AluBI AGCT 8 cut(s) 10, 74, 96, 242, 320, 619, 895, 1204
AluI AGCT 8 cut(s) 10, 74, 96, 242, 320, 619, 895, 1204
Alw21I GWGCWC 1 cut(s) 209
Alw26I GTCTC 4 cut(s) 127, 786, 925, 1234
AlwI GGATC 1 cut(s) 589
AlwNI CAGNNNCTG 1 cut(s) 1474
Ama87I CYCGRG 1 cut(s) 202
Aor13HI TCCGGA 1 cut(s) 236
AoxI GGCC 3 cut(s) 586, 995, 1304
ApeKI GCWGC 6 cut(s) 175, 212, 221, 398, 914, 1223
ApoI RAATTY 1 cut(s) 500
Asp700I GAANNNNTTC 1 cut(s) 570
AspLEI GCGC 1 cut(s) 301
AspS9I GGNCC 2 cut(s) 996, 1305
AsuC2I CCSGG 1 cut(s) 32
AsuHPI GGTGA 2 cut(s) 295, 646
AvaI CYCGRG 1 cut(s) 202
BanI GGYRCC 2 cut(s) 250, 1033
BanII GRGCYC 1 cut(s) 315
BarI GAAGNNNNNNTAC 1 cut(s) 31
Bbv12I GWGCWC 1 cut(s) 209
BbvI GCAGC 6 cut(s) 187, 199, 208, 410, 901, 1210
BccI CCATC 3 cut(s) 572, 971, 1280
BceAI ACGGC 7 cut(s) 348, 573, 688, 744, 792, 902, 1211
BciT130I CCWGG 7 cut(s) 902, 1031, 1038, 1211, 1340, 1426, 1475
BcnI CCSGG 1 cut(s) 32
BcoDI GTCTC 4 cut(s) 127, 786, 925, 1234
BfaI CTAG 3 cut(s) 11, 75, 258
BfmI CTRYAG 2 cut(s) 396, 1435
BfoI RGCGCY 1 cut(s) 302
BfuAI ACCTGC 3 cut(s) 392, 424, 1117
BisI GCNGC 7 cut(s) 176, 213, 222, 297, 399, 915, 1224
BlsI GCNGC 7 cut(s) 177, 214, 223, 298, 400, 916, 1225
BmcAI AGTACT 2 cut(s) 17, 167
Bme1390I CCNGG 8 cut(s) 32, 902, 1031, 1038, 1211, 1340, 1426, 1475
BmeT110I CYCGRG 1 cut(s) 202
BmgT120I GGNCC 2 cut(s) 996, 1305
BmiI GGNNCC 4 cut(s) 252, 567, 806, 1035
BmrFI CCNGG 8 cut(s) 32, 902, 1031, 1038, 1211, 1340, 1426, 1475
BmsI GCATC 2 cut(s) 922, 1231
BplI GAGNNNNNCTC 2 cut(s) 172, 204
BpmI CTGGAG 3 cut(s) 306, 1059, 1496
BpuMI CCSGG 1 cut(s) 32
BsaBI GATNNNNATC 2 cut(s) 873, 1182
BsaHI GRCGYC 3 cut(s) 119, 957, 1266
BsaJI CCNNGG 3 cut(s) 30, 478, 1339
BsaWI WCCGGW 1 cut(s) 236
Bsc4I CCNNNNNNNGG 8 cut(s) 37, 401, 520, 521, 785, 814, 1345, 1425
Bse118I RCCGGY 1 cut(s) 253
Bse3DI GCAATG 1 cut(s) 1456
Bse8I GATNNNNATC 2 cut(s) 873, 1182
BseAI TCCGGA 1 cut(s) 236
BseBI CCWGG 7 cut(s) 902, 1031, 1038, 1211, 1340, 1426, 1475
BseDI CCNNGG 3 cut(s) 30, 478, 1339
BseGI GGATG 4 cut(s) 874, 937, 1183, 1246
BseJI GATNNNNATC 2 cut(s) 873, 1182
BseLI CCNNNNNNNGG 8 cut(s) 37, 401, 520, 521, 785, 814, 1345, 1425
BseMI GCAATG 1 cut(s) 1456
BseMII CTCAG 2 cut(s) 153, 239
BseRI GAGGAG 1 cut(s) 804
BseXI GCAGC 6 cut(s) 187, 199, 208, 410, 901, 1210
Bsh1236I CGCG 2 cut(s) 969, 1278
BshFI GGCC 3 cut(s) 588, 997, 1306
BshNI GGYRCC 2 cut(s) 250, 1033
BsiHKAI GWGCWC 1 cut(s) 209
BsiHKCI CYCGRG 1 cut(s) 202
BsiSI CCGG 5 cut(s) 32, 237, 254, 863, 1172
BslFI GGGAC 6 cut(s) 216, 285, 968, 1042, 1277, 1479
BslI CCNNNNNNNGG 8 cut(s) 37, 401, 520, 521, 785, 814, 1345, 1425
BsmAI GTCTC 4 cut(s) 127, 786, 925, 1234
BsmBI CGTCTC 3 cut(s) 127, 925, 1234
BsmFI GGGAC 6 cut(s) 216, 285, 968, 1042, 1277, 1479
BsmI GAATGC 1 cut(s) 350
BsnI GGCC 3 cut(s) 588, 997, 1306
BsoBI CYCGRG 1 cut(s) 202
Bsp1286I GDGCHC 2 cut(s) 209, 315
Bsp13I TCCGGA 1 cut(s) 236
Bsp143I GATC 6 cut(s) 581, 1019, 1042, 1116, 1328, 1479
BspACI CCGC 6 cut(s) 38, 210, 248, 296, 967, 1276
BspANI GGCC 3 cut(s) 588, 997, 1306
BspCNI CTCAG 2 cut(s) 154, 238
BspEI TCCGGA 1 cut(s) 236
BspFNI CGCG 2 cut(s) 969, 1278
BspLI GGNNCC 4 cut(s) 252, 567, 806, 1035
BspMAI CTGCAG 2 cut(s) 400, 1439
BspMI ACCTGC 3 cut(s) 392, 424, 1117
BspPI GGATC 1 cut(s) 589
BspT107I GGYRCC 2 cut(s) 250, 1033
BsrDI GCAATG 1 cut(s) 1456
BsrFI RCCGGY 1 cut(s) 253
BssAI RCCGGY 1 cut(s) 253
BssECI CCNNGG 3 cut(s) 30, 478, 1339
BssMI GATC 6 cut(s) 581, 1019, 1042, 1116, 1328, 1479
BssNI GRCGYC 3 cut(s) 119, 957, 1266
BssT1I CCWWGG 1 cut(s) 478
Bst2UI CCWGG 7 cut(s) 902, 1031, 1038, 1211, 1340, 1426, 1475
Bst4CI ACNGT 1 cut(s) 307
Bst6I CTCTTC 4 cut(s) 125, 576, 842, 1151
BstACI GRCGYC 3 cut(s) 119, 957, 1266
BstAPI GCANNNNNTGC 1 cut(s) 668
BstC8I GCNNGC 4 cut(s) 255, 723, 1015, 1324
BstDEI CTNAG 3 cut(s) 162, 225, 602
BstENI CCTNNNNNAGG 1 cut(s) 399
BstF5I GGATG 4 cut(s) 874, 937, 1183, 1246
BstFNI CGCG 2 cut(s) 969, 1278
BstH2I RGCGCY 1 cut(s) 302
BstHHI GCGC 1 cut(s) 301
BstKTI GATC 6 cut(s) 584, 1022, 1045, 1119, 1331, 1482
BstMAI GTCTC 4 cut(s) 127, 786, 925, 1234
BstMBI GATC 6 cut(s) 581, 1019, 1042, 1116, 1328, 1479
BstMWI GCNNNNNNNGC 9 cut(s) 93, 181, 218, 221, 254, 398, 474, 668, 1109
BstNI CCWGG 7 cut(s) 902, 1031, 1038, 1211, 1340, 1426, 1475
BstNSI RCATGY 1 cut(s) 725
BstSCI CCNGG 8 cut(s) 30, 900, 1029, 1036, 1209, 1338, 1424, 1473
BstSFI CTRYAG 2 cut(s) 396, 1435
BstUI CGCG 2 cut(s) 969, 1278
BstV1I GCAGC 6 cut(s) 187, 199, 208, 410, 901, 1210
BstX2I RGATCY 1 cut(s) 581
BstXI CCANNNNNNTGG 1 cut(s) 1037
BstYI RGATCY 1 cut(s) 581
BsuRI GGCC 3 cut(s) 588, 997, 1306
BtsCI GGATG 4 cut(s) 874, 937, 1183, 1246
BtsIMutI CAGTG 2 cut(s) 456, 1475
BveI ACCTGC 3 cut(s) 392, 424, 1117
Cac8I GCNNGC 4 cut(s) 255, 723, 1015, 1324
CaiI CAGNNNCTG 1 cut(s) 1474
CfoI GCGC 1 cut(s) 301
Cfr10I RCCGGY 1 cut(s) 253
Cfr13I GGNCC 2 cut(s) 996, 1305
CseI GACGC 4 cut(s) 958, 965, 1267, 1274
CsiI ACCWGGT 1 cut(s) 1424
Csp6I GTAC 2 cut(s) 16, 166
CviAII CATG 5 cut(s) 509, 722, 983, 1292, 1451
CviQI GTAC 2 cut(s) 16, 166
DdeI CTNAG 3 cut(s) 162, 225, 602
DpnI GATC 6 cut(s) 583, 1021, 1044, 1118, 1330, 1481
DpnII GATC 6 cut(s) 581, 1019, 1042, 1116, 1328, 1479
EaeI YGGCCR 1 cut(s) 586
Eam1104I CTCTTC 4 cut(s) 125, 576, 842, 1151
EarI CTCTTC 4 cut(s) 125, 576, 842, 1151
Eco130I CCWWGG 1 cut(s) 478
Eco24I GRGCYC 1 cut(s) 315
Eco57I CTGAAG 4 cut(s) 26, 368, 866, 1175
Eco88I CYCGRG 1 cut(s) 202
EcoNI CCTNNNNNAGG 1 cut(s) 399
EcoRII CCWGG 7 cut(s) 900, 1029, 1036, 1209, 1338, 1424, 1473
EcoT14I CCWWGG 1 cut(s) 478
EcoT22I ATGCAT 1 cut(s) 727
EcoT38I GRGCYC 1 cut(s) 315
ErhI CCWWGG 1 cut(s) 478
Esp3I CGTCTC 3 cut(s) 127, 925, 1234
FaeI CATG 5 cut(s) 512, 725, 986, 1295, 1454
FaqI GGGAC 6 cut(s) 216, 285, 968, 1042, 1277, 1479
FatI CATG 5 cut(s) 508, 721, 982, 1291, 1450
FauNDI CATATG 1 cut(s) 727
Fnu4HI GCNGC 7 cut(s) 176, 213, 222, 297, 399, 915, 1224
FokI GGATG 4 cut(s) 861, 944, 1170, 1253
FriOI GRGCYC 1 cut(s) 315
Fsp4HI GCNGC 7 cut(s) 176, 213, 222, 297, 399, 915, 1224
FspBI CTAG 3 cut(s) 11, 75, 258
GlaI GCGC 1 cut(s) 300
GluI GCNGC 7 cut(s) 176, 213, 222, 297, 399, 915, 1224
GsuI CTGGAG 3 cut(s) 306, 1059, 1496
HaeII RGCGCY 1 cut(s) 302
HaeIII GGCC 3 cut(s) 588, 997, 1306
HapII CCGG 5 cut(s) 32, 237, 254, 863, 1172
HgaI GACGC 4 cut(s) 958, 965, 1267, 1274
HhaI GCGC 1 cut(s) 301
Hin1I GRCGYC 3 cut(s) 119, 957, 1266
Hin1II CATG 5 cut(s) 512, 725, 986, 1295, 1454
Hin6I GCGC 1 cut(s) 299
HinP1I GCGC 1 cut(s) 299
HincII GTYRAC 2 cut(s) 889, 1198
HindII GTYRAC 2 cut(s) 889, 1198
HindIII AAGCTT 1 cut(s) 617
HinfI GANTC 6 cut(s) 138, 229, 341, 491, 1006, 1315
HpaII CCGG 5 cut(s) 32, 237, 254, 863, 1172
HphI GGTGA 2 cut(s) 295, 646
Hpy166II GTNNAC 3 cut(s) 330, 889, 1198
Hpy188I TCNGA 9 cut(s) 66, 163, 228, 748, 780, 846, 974, 1155, 1283
Hpy188III TCNNGA 6 cut(s) 237, 323, 345, 547, 575, 1120
Hpy8I GTNNAC 3 cut(s) 330, 889, 1198
Hpy99I CGWCG 4 cut(s) 121, 124, 974, 1283
HpyAV CCTTC 5 cut(s) 71, 362, 530, 544, 553
HpyCH4III ACNGT 1 cut(s) 307
HpyCH4IV ACGT 1 cut(s) 119
HpyCH4V TGCA 5 cut(s) 398, 725, 731, 1437, 1461
HpyF10VI GCNNNNNNNGC 9 cut(s) 93, 181, 218, 221, 254, 398, 474, 668, 1109
HpyF3I CTNAG 3 cut(s) 162, 225, 602
HpySE526I ACGT 1 cut(s) 119
Hsp92I GRCGYC 3 cut(s) 119, 957, 1266
Hsp92II CATG 5 cut(s) 512, 725, 986, 1295, 1454
HspAI GCGC 1 cut(s) 299
Kpn2I TCCGGA 1 cut(s) 236
KroI GCCGGC 1 cut(s) 253
KroNI GCCGGC 1 cut(s) 255
Kzo9I GATC 6 cut(s) 581, 1019, 1042, 1116, 1328, 1479
LmnI GCTCC 7 cut(s) 239, 325, 347, 397, 423, 804, 1348
Lsp1109I GCAGC 6 cut(s) 187, 199, 208, 410, 901, 1210
LweI GCATC 2 cut(s) 922, 1231
MabI ACCWGGT 1 cut(s) 1424
MaeI CTAG 3 cut(s) 11, 75, 258
MaeII ACGT 1 cut(s) 119
MaeIII GTNAC 4 cut(s) 451, 652, 809, 1354
MalI GATC 6 cut(s) 583, 1021, 1044, 1118, 1330, 1481
MboI GATC 6 cut(s) 581, 1019, 1042, 1116, 1328, 1479
MflI RGATCY 1 cut(s) 581
MhlI GDGCHC 2 cut(s) 209, 315
MluCI AATT 4 cut(s) 112, 459, 500, 691
MlyI GAGTC 3 cut(s) 132, 238, 500
MmeI TCCRAC 2 cut(s) 952, 1261
Mph1103I ATGCAT 1 cut(s) 727
MroI TCCGGA 1 cut(s) 236
MroNI GCCGGC 1 cut(s) 253
MroXI GAANNNNTTC 1 cut(s) 570
MseI TTAA 4 cut(s) 519, 597, 1094, 1531
MslI CAYNNNNRTG 2 cut(s) 726, 1449
MspA1I CMGCKG 1 cut(s) 212
MspI CCGG 5 cut(s) 32, 237, 254, 863, 1172
MspR9I CCNGG 8 cut(s) 32, 902, 1031, 1038, 1211, 1340, 1426, 1475
Mva1269I GAATGC 1 cut(s) 350
MvaI CCWGG 7 cut(s) 902, 1031, 1038, 1211, 1340, 1426, 1475
MvnI CGCG 2 cut(s) 969, 1278
MwoI GCNNNNNNNGC 9 cut(s) 93, 181, 218, 221, 254, 398, 474, 668, 1109
NaeI GCCGGC 1 cut(s) 255
NciI CCSGG 1 cut(s) 32
NdeI CATATG 1 cut(s) 727
NdeII GATC 6 cut(s) 581, 1019, 1042, 1116, 1328, 1479
NgoMIV GCCGGC 1 cut(s) 253
NlaIII CATG 5 cut(s) 512, 725, 986, 1295, 1454
NlaIV GGNNCC 4 cut(s) 252, 567, 806, 1035
NmuCI GTSAC 3 cut(s) 451, 652, 1354
NsiI ATGCAT 1 cut(s) 727
NspI RCATGY 1 cut(s) 725
PaeI GCATGC 1 cut(s) 725
PaqCI CACCTGC 1 cut(s) 392
PctI GAATGC 1 cut(s) 350
PdiI GCCGGC 1 cut(s) 255
PdmI GAANNNNTTC 1 cut(s) 570
PfeI GAWTC 3 cut(s) 341, 1006, 1315
PflMI CCANNNNNTGG 2 cut(s) 1345, 1425
PkrI GCNGC 7 cut(s) 177, 214, 223, 298, 400, 916, 1225
PleI GAGTC 3 cut(s) 132, 237, 499
PpsI GAGTC 3 cut(s) 132, 237, 499
Psp6I CCWGG 7 cut(s) 900, 1029, 1036, 1209, 1338, 1424, 1473
PspGI CCWGG 7 cut(s) 900, 1029, 1036, 1209, 1338, 1424, 1473
PspN4I GGNNCC 4 cut(s) 252, 567, 806, 1035
PspPI GGNCC 2 cut(s) 996, 1305
PstI CTGCAG 2 cut(s) 400, 1439
PstNI CAGNNNCTG 1 cut(s) 1474
PsuI RGATCY 1 cut(s) 581
RsaI GTAC 2 cut(s) 17, 167
RsaNI GTAC 2 cut(s) 16, 166
RseI CAYNNNNRTG 2 cut(s) 726, 1449
SaqAI TTAA 4 cut(s) 519, 597, 1094, 1531
SatI GCNGC 7 cut(s) 176, 213, 222, 297, 399, 915, 1224
Sau3AI GATC 6 cut(s) 581, 1019, 1042, 1116, 1328, 1479
Sau96I GGNCC 2 cut(s) 996, 1305
ScaI AGTACT 2 cut(s) 17, 167
SchI GAGTC 3 cut(s) 132, 238, 500
ScrFI CCNGG 8 cut(s) 32, 902, 1031, 1038, 1211, 1340, 1426, 1475
SduI GDGCHC 2 cut(s) 209, 315
SexAI ACCWGGT 1 cut(s) 1424
SfaNI GCATC 2 cut(s) 922, 1231
SfcI CTRYAG 2 cut(s) 396, 1435
SmiMI CAYNNNNRTG 2 cut(s) 726, 1449
SphI GCATGC 1 cut(s) 725
Sse9I AATT 4 cut(s) 112, 459, 500, 691
SsiI CCGC 6 cut(s) 38, 210, 248, 296, 967, 1276
SspMI CTAG 3 cut(s) 11, 75, 258
StyD4I CCNGG 8 cut(s) 30, 900, 1029, 1036, 1209, 1338, 1424, 1473
StyI CCWWGG 1 cut(s) 478
TaaI ACNGT 1 cut(s) 307
TaiI ACGT 1 cut(s) 122
TaqI TCGA 5 cut(s) 116, 171, 278, 362, 1362
TasI AATT 4 cut(s) 112, 459, 500, 691
TatI WGTACW 2 cut(s) 15, 165
TauI GCSGC 1 cut(s) 299
TfiI GAWTC 3 cut(s) 341, 1006, 1315
Tru1I TTAA 4 cut(s) 519, 597, 1094, 1531
Tru9I TTAA 4 cut(s) 519, 597, 1094, 1531
TscAI CASTG 2 cut(s) 456, 1475
TseFI GTSAC 3 cut(s) 451, 652, 1354
TseI GCWGC 6 cut(s) 175, 212, 221, 398, 914, 1223
Tsp45I GTSAC 3 cut(s) 451, 652, 1354
TspDTI ATGAA 7 cut(s) 837, 885, 999, 1146, 1194, 1308, 1439
TspRI CASTG 2 cut(s) 456, 1475
Van91I CCANNNNNTGG 2 cut(s) 1345, 1425
XagI CCTNNNNNAGG 1 cut(s) 399
XapI RAATTY 1 cut(s) 500
XceI RCATGY 1 cut(s) 725
XmnI GAANNNNTTC 1 cut(s) 570
XspI CTAG 3 cut(s) 11, 75, 258
ZraI GACGTC 1 cut(s) 120
ZrmI AGTACT 2 cut(s) 17, 167
Zsp2I ATGCAT 1 cut(s) 727
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.