Rw0G019510

Single-stranded DNA-binding protein WHY1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00876
OG0009517
Physical Location & Seq
Reverse (-)
3469 .. 5429
1961 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G019510.1

Sequence Viewer

Length: 366 bp
ATGTACCAGACCAAAATTAGGAGGAGGAATCCAGTATTTTCGCTATCAGCGACAGAAATTGGAAGCATAGTGAGCCTTGGTGCGAGGTGTGAGGAAGTCTCTGAATTTTTTCACGATCCTTTTAAGGGGAATAGGTGCTATTGCCGTGAGGAAGGCAAGGTCAGGAAGGTGTTGAAAGTGGAACCTCTTCCTGATGGATCTGGCCGTTTCTTTAACCTCAGACTCATATCCATGTGTTCTCTGCAATATATCTTGCCGTATCTCATAGGTTGGCATGCATATGCAAACTCTATAAATCCAGAAGATATGAGCCGTGTGAATAACTCCACTCCTAGATATGGAGGAGACTTTGAATGGAGCTGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000018 GO:0000229 GO:0003674 GO:0003676 GO:0003677 GO:0003697 GO:0003700 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005694 GO:0005737 GO:0006139 GO:0006259 GO:0006281 GO:0006355 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006974 GO:0008150 GO:0008152 GO:0009295 GO:0009507 GO:0009508 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009607 GO:0009620 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010628 GO:0010639 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0032204 GO:0032205 GO:0032210 GO:0032211 GO:0033043 GO:0033044 GO:0033554 GO:0034641 GO:0042162 GO:0042646 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043565 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045893 GO:0045910 GO:0045934 GO:0045935 GO:0046483 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051052 GO:0051053 GO:0051128 GO:0051129 GO:0051171 GO:0051172 GO:0051173 GO:0051252 GO:0051254 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0065008 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0098542 GO:0140110 GO:1901360 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:1904356 GO:1904357 GO:2000112 GO:2000113 GO:2000278 GO:2000279 GO:2001141 GO:2001251
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Whirly

Protein Analysis

121

Amino Acids

14.03

Weight (kDa)

8.75

Isoelectric Point (pI)

46.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Whirly PF08536 10 - 75 3.7e-16 Whirly transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0009517)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G14410 AT2G02740
fragaria_vesca FvH4_4g31850 FvH4_4g31850
malus_domestica MD13G1078000.v1.1 MD16G1077800.v1.1
prunus_persica Prupe.1G269100_v2.0.a1
pyrus_communis pycom16g06720
rosa_chinensis RchiOBHm_Chr4g0440511
rosa_laevigata RLG00000006175
rosa_multiflora Rmu_sc0007648.1_g000008
rosa_roxburghii Rroxscaffold_5G00381340
rosa_rugosa Rorug04G0326400
rosa_samantha Rh4AG378000 Rh4BG390600 Rh4CG405300 Rh4DG384300 Rh5DG089700
rosa_wichuraiana Rw0G019510 Rw4G032300 Rw4G032350 Rw4G032450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 110, 205
AcoI YGGCCR 1 cut(s) 202
AcsI RAATTY 1 cut(s) 104
AfaI GTAC 1 cut(s) 5
AfiI CCNNNNNNNGG 3 cut(s) 18, 125, 338
AgsI TTSAA 2 cut(s) 175, 353
AluBI AGCT 1 cut(s) 360
AluI AGCT 1 cut(s) 360
Alw26I GTCTC 2 cut(s) 103, 339
AlwI GGATC 2 cut(s) 110, 205
AoxI GGCC 1 cut(s) 202
ApoI RAATTY 1 cut(s) 104
Asp700I GAANNNNTTC 2 cut(s) 108, 186
BccI CCATC 1 cut(s) 188
BceAI ACGGC 4 cut(s) 129, 189, 241, 297
BcoDI GTCTC 2 cut(s) 103, 339
BfaI CTAG 1 cut(s) 333
BmiI GGNNCC 1 cut(s) 183
BplI GAGNNNNNCTC 2 cut(s) 83, 115
BsaJI CCNNGG 1 cut(s) 76
Bsc4I CCNNNNNNNGG 3 cut(s) 18, 125, 338
Bse1I ACTGG 1 cut(s) 32
BseDI CCNNGG 1 cut(s) 76
BseLI CCNNNNNNNGG 3 cut(s) 18, 125, 338
BseMII CTCAG 1 cut(s) 232
BseNI ACTGG 1 cut(s) 32
BseRI GAGGAG 2 cut(s) 37, 357
BshFI GGCC 1 cut(s) 204
BslI CCNNNNNNNGG 3 cut(s) 18, 125, 338
BsmAI GTCTC 2 cut(s) 103, 339
BsnI GGCC 1 cut(s) 204
Bsp143I GATC 2 cut(s) 115, 197
BspANI GGCC 1 cut(s) 204
BspCNI CTCAG 1 cut(s) 231
BspLI GGNNCC 1 cut(s) 183
BspPI GGATC 2 cut(s) 110, 205
BsrI ACTGG 1 cut(s) 32
BssECI CCNNGG 1 cut(s) 76
BssMI GATC 2 cut(s) 115, 197
BssT1I CCWWGG 1 cut(s) 76
Bst6I CTCTTC 1 cut(s) 192
BstC8I GCNNGC 1 cut(s) 276
BstDEI CTNAG 1 cut(s) 218
BstKTI GATC 2 cut(s) 118, 200
BstMAI GTCTC 2 cut(s) 103, 339
BstMBI GATC 2 cut(s) 115, 197
BstMWI GCNNNNNNNGC 1 cut(s) 72
BstNSI RCATGY 1 cut(s) 278
BstX2I RGATCY 1 cut(s) 197
BstYI RGATCY 1 cut(s) 197
BsuRI GGCC 1 cut(s) 204
Cac8I GCNNGC 1 cut(s) 276
Csp6I GTAC 1 cut(s) 4
CviAII CATG 2 cut(s) 232, 275
CviJI RGCY 4 cut(s) 75, 204, 312, 360
CviKI_1 RGCY 4 cut(s) 75, 204, 312, 360
CviQI GTAC 1 cut(s) 4
DdeI CTNAG 1 cut(s) 218
DpnI GATC 2 cut(s) 117, 199
DpnII GATC 2 cut(s) 115, 197
EaeI YGGCCR 1 cut(s) 202
Eam1104I CTCTTC 1 cut(s) 192
EarI CTCTTC 1 cut(s) 192
Eco130I CCWWGG 1 cut(s) 76
EcoT14I CCWWGG 1 cut(s) 76
EcoT22I ATGCAT 1 cut(s) 280
ErhI CCWWGG 1 cut(s) 76
FaeI CATG 2 cut(s) 235, 278
FatI CATG 2 cut(s) 231, 274
FauNDI CATATG 1 cut(s) 280
FspBI CTAG 1 cut(s) 333
HaeIII GGCC 1 cut(s) 204
Hin1II CATG 2 cut(s) 235, 278
HinfI GANTC 2 cut(s) 28, 222
Hpy188I TCNGA 2 cut(s) 103, 221
Hpy188III TCNNGA 4 cut(s) 113, 163, 191, 299
HpyAV CCTTC 2 cut(s) 146, 160
HpyCH4V TGCA 3 cut(s) 244, 278, 284
HpyF10VI GCNNNNNNNGC 1 cut(s) 72
HpyF3I CTNAG 1 cut(s) 218
Hsp92II CATG 2 cut(s) 235, 278
Kzo9I GATC 2 cut(s) 115, 197
LmnI GCTCC 1 cut(s) 357
LpnPI CCDG 7 cut(s) 20, 45, 148, 186, 204, 312, 346
MaeI CTAG 1 cut(s) 333
MalI GATC 2 cut(s) 117, 199
MboI GATC 2 cut(s) 115, 197
MboII GAAGA 2 cut(s) 179, 314
MflI RGATCY 1 cut(s) 197
MluCI AATT 3 cut(s) 15, 57, 104
MlyI GAGTC 1 cut(s) 216
MnlI CCTC 8 cut(s) 15, 18, 78, 85, 142, 195, 227, 335
Mph1103I ATGCAT 1 cut(s) 280
MroXI GAANNNNTTC 2 cut(s) 108, 186
MseI TTAA 2 cut(s) 123, 213
MslI CAYNNNNRTG 2 cut(s) 230, 279
MwoI GCNNNNNNNGC 1 cut(s) 72
NdeI CATATG 1 cut(s) 280
NdeII GATC 2 cut(s) 115, 197
NlaIII CATG 2 cut(s) 235, 278
NlaIV GGNNCC 1 cut(s) 183
NsiI ATGCAT 1 cut(s) 280
NspI RCATGY 1 cut(s) 278
PaeI GCATGC 1 cut(s) 278
PcsI WCGNNNNNNNCGW 1 cut(s) 47
PdmI GAANNNNTTC 2 cut(s) 108, 186
PfeI GAWTC 1 cut(s) 28
PleI GAGTC 1 cut(s) 216
PpsI GAGTC 1 cut(s) 216
PspN4I GGNNCC 1 cut(s) 183
PsuI RGATCY 1 cut(s) 197
RsaI GTAC 1 cut(s) 5
RsaNI GTAC 1 cut(s) 4
RseI CAYNNNNRTG 2 cut(s) 230, 279
SaqAI TTAA 2 cut(s) 123, 213
Sau3AI GATC 2 cut(s) 115, 197
SchI GAGTC 1 cut(s) 216
SetI ASST 8 cut(s) 89, 137, 162, 171, 187, 219, 271, 362
SmiMI CAYNNNNRTG 2 cut(s) 230, 279
SphI GCATGC 1 cut(s) 278
Sse9I AATT 3 cut(s) 15, 57, 104
SspMI CTAG 1 cut(s) 333
StyI CCWWGG 1 cut(s) 76
TasI AATT 3 cut(s) 15, 57, 104
TfiI GAWTC 1 cut(s) 28
Tru1I TTAA 2 cut(s) 123, 213
Tru9I TTAA 2 cut(s) 123, 213
XapI RAATTY 1 cut(s) 104
XceI RCATGY 1 cut(s) 278
XmnI GAANNNNTTC 2 cut(s) 108, 186
XspI CTAG 1 cut(s) 333
Zsp2I ATGCAT 1 cut(s) 280
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.