Prupe.1G269100_v2.0.a1

Single-stranded DNA-binding protein WHY1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0009517
Physical Location & Seq
Forward (+)
27624570 .. 27627359
2790 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G269100.1

Sequence Viewer

Length: 837 bp
ATGCTGAGACTACACTCGCTATCTTCACCGGCGGTGGCTGCACAAAACCCTAACCAAAACCCTAAACAGTGCCTTGCTTCGGAGCTCTCAAGCAGAGCTAGGGTTTTCAGCACCAACAGCTTTGGCTTTGCTCCGAGTTTGAGCTCATCGAGGAAGAGGCTCTCCTTGAAATGTCGCCAGTCTGAGTACTTCGACCAGCAGAGGGCCAGTACCGCCTCTGCCCCTAACAAACCGTCTCCTCCTGCTCCACAAACTCCCGCAGGAGGAACTGGGTTGCCGCCTAGGTTTTTTGTGGGTCACTCAATATACAAAGGAAAGGCAGCTCTTACCGTAGAGCCCAAAGCTCCGGAGTTCACAGCTTTAGATTCAGGGGCATTCAAACTCTCCAGGGAAGGCTTTGTTCTACTTCAGTTTGCTCCGGCAGCAGGTGTTCGTGTATATGATTGGAGCAGAAAGCAGGTATTCTCACTATCAGTGACAGAAATTGGAAGCCTGGTTTGCCTTGGCTCGAAGGAGTCCATTGAATTCTTCCATGATCCTTTTAAGGGGAAAAGTGACGAGGGCAAGGTCAGGAAGGTGTTGAAGGTGGAGCCTCTTCCGGATGGATCTGGCCATTTCTTTAACCTCAGTGTTCAGAACAAGCTTATCAACTTGGATGAGAGCGTTTATATTCCTATCACCAGAGCAGAGTTTGCAGTTCTCAAATCAGCTTTCAATTTTATCCTGCCGTACATTTTAGGTTGGCATGCCTATGCAAACTCCATAAAACCAGAAGATTCGAGCCGTATGAATAACTCTAGTTCTAGATATGGAGGAGATTTTGAATGGAGCCGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000018 GO:0000229 GO:0003674 GO:0003676 GO:0003677 GO:0003697 GO:0003700 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005694 GO:0005737 GO:0006139 GO:0006259 GO:0006281 GO:0006355 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006974 GO:0008150 GO:0008152 GO:0009295 GO:0009507 GO:0009508 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009607 GO:0009620 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010628 GO:0010639 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0032204 GO:0032205 GO:0032210 GO:0032211 GO:0033043 GO:0033044 GO:0033554 GO:0034641 GO:0042162 GO:0042646 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043565 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045893 GO:0045910 GO:0045934 GO:0045935 GO:0046483 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051052 GO:0051053 GO:0051128 GO:0051129 GO:0051171 GO:0051172 GO:0051173 GO:0051252 GO:0051254 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0065008 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0098542 GO:0140110 GO:1901360 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:1904356 GO:1904357 GO:2000112 GO:2000113 GO:2000278 GO:2000279 GO:2001141 GO:2001251
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Whirly

Protein Analysis

279

Amino Acids

30.54

Weight (kDa)

9.63

Isoelectric Point (pI)

49.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0009517)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G14410 AT2G02740
fragaria_vesca FvH4_4g31850 FvH4_4g31850
malus_domestica MD13G1078000.v1.1 MD16G1077800.v1.1
prunus_persica Prupe.1G269100_v2.0.a1
pyrus_communis pycom16g06720
rosa_chinensis RchiOBHm_Chr4g0440511
rosa_laevigata RLG00000006175
rosa_multiflora Rmu_sc0007648.1_g000008
rosa_roxburghii Rroxscaffold_5G00381340
rosa_rugosa Rorug04G0326400
rosa_samantha Rh4AG378000 Rh4BG390600 Rh4CG405300 Rh4DG384300 Rh5DG089700
rosa_wichuraiana Rw0G019510 Rw4G032300 Rw4G032350 Rw4G032450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 416
Acc36I ACCTGC 2 cut(s) 416, 448
AccIII TCCGGA 2 cut(s) 346, 598
AciI CCGC 4 cut(s) 32, 213, 258, 278
AclWI GGATC 2 cut(s) 530, 613
AcoI YGGCCR 1 cut(s) 610
AcsI RAATTY 1 cut(s) 524
AcuI CTGAAG 1 cut(s) 392
AfaI GTAC 3 cut(s) 188, 211, 731
AfiI CCNNNNNNNGG 5 cut(s) 79, 202, 263, 425, 545
AgsI TTSAA 6 cut(s) 169, 379, 524, 583, 715, 824
AjnI CCWGG 2 cut(s) 386, 492
AluBI AGCT 9 cut(s) 85, 98, 120, 144, 323, 344, 359, 643, 710
AluI AGCT 9 cut(s) 85, 98, 120, 144, 323, 344, 359, 643, 710
Alw21I GWGCWC 2 cut(s) 87, 146
Alw26I GTCTC 1 cut(s) 240
AlwI GGATC 2 cut(s) 530, 613
Aor13HI TCCGGA 2 cut(s) 346, 598
AoxI GGCC 2 cut(s) 204, 610
ApeKI GCWGC 3 cut(s) 38, 320, 422
ApoI RAATTY 1 cut(s) 524
AspA2I CCTAGG 1 cut(s) 281
AspS9I GGNCC 1 cut(s) 204
AsuHPI GGTGA 2 cut(s) 18, 670
AvrII CCTAGG 1 cut(s) 281
BalI TGGCCA 1 cut(s) 612
BanII GRGCYC 3 cut(s) 87, 146, 339
Bbv12I GWGCWC 2 cut(s) 87, 146
BbvI GCAGC 3 cut(s) 25, 332, 434
BccI CCATC 1 cut(s) 596
BceAI ACGGC 2 cut(s) 712, 768
BciT130I CCWGG 2 cut(s) 388, 494
BcoDI GTCTC 1 cut(s) 240
BfaI CTAG 4 cut(s) 99, 282, 798, 804
BfuAI ACCTGC 2 cut(s) 416, 448
BisI GCNGC 4 cut(s) 39, 278, 321, 423
BlnI CCTAGG 1 cut(s) 281
BlsI GCNGC 4 cut(s) 40, 279, 322, 424
BmcAI AGTACT 1 cut(s) 188
Bme1390I CCNGG 2 cut(s) 388, 494
BmgT120I GGNCC 1 cut(s) 204
BmiI GGNNCC 2 cut(s) 591, 830
BmrFI CCNGG 2 cut(s) 388, 494
BmrI ACTGGG 1 cut(s) 279
BmuI ACTGGG 1 cut(s) 279
BpmI CTGGAG 1 cut(s) 370
BpuEI CTTGAG 1 cut(s) 73
BsaJI CCNNGG 3 cut(s) 281, 387, 502
BsaWI WCCGGW 2 cut(s) 346, 598
Bsc4I CCNNNNNNNGG 5 cut(s) 79, 202, 263, 425, 545
Bse118I RCCGGY 2 cut(s) 28, 831
Bse1I ACTGG 3 cut(s) 178, 207, 274
BseAI TCCGGA 2 cut(s) 346, 598
BseBI CCWGG 2 cut(s) 388, 494
BseDI CCNNGG 3 cut(s) 281, 387, 502
BseGI GGATG 2 cut(s) 607, 661
BseLI CCNNNNNNNGG 5 cut(s) 79, 202, 263, 425, 545
BseMII CTCAG 2 cut(s) 174, 640
BseNI ACTGG 3 cut(s) 178, 207, 274
BseRI GAGGAG 2 cut(s) 228, 828
BseXI GCAGC 3 cut(s) 25, 332, 434
BsgI GTGCAG 1 cut(s) 24
BshFI GGCC 2 cut(s) 206, 612
BsiHKAI GWGCWC 2 cut(s) 87, 146
BsiSI CCGG 5 cut(s) 29, 347, 419, 599, 832
BslI CCNNNNNNNGG 5 cut(s) 79, 202, 263, 425, 545
BsmAI GTCTC 1 cut(s) 240
BsmBI CGTCTC 1 cut(s) 240
BsmI GAATGC 1 cut(s) 374
BsnI GGCC 2 cut(s) 206, 612
Bsp1286I GDGCHC 3 cut(s) 87, 146, 339
Bsp13I TCCGGA 2 cut(s) 346, 598
Bsp143I GATC 2 cut(s) 535, 605
BspACI CCGC 4 cut(s) 32, 213, 258, 278
BspANI GGCC 2 cut(s) 206, 612
BspCNI CTCAG 2 cut(s) 175, 639
BspEI TCCGGA 2 cut(s) 346, 598
BspLI GGNNCC 2 cut(s) 591, 830
BspMI ACCTGC 2 cut(s) 416, 448
BspPI GGATC 2 cut(s) 530, 613
BsrFI RCCGGY 2 cut(s) 28, 831
BsrI ACTGG 3 cut(s) 178, 207, 274
BssAI RCCGGY 2 cut(s) 28, 831
BssECI CCNNGG 3 cut(s) 281, 387, 502
BssMI GATC 2 cut(s) 535, 605
BssT1I CCWWGG 2 cut(s) 281, 502
Bst2UI CCWGG 2 cut(s) 388, 494
Bst4CI ACNGT 3 cut(s) 69, 234, 331
Bst6I CTCTTC 2 cut(s) 149, 600
BstAPI GCANNNNNTGC 1 cut(s) 692
BstC8I GCNNGC 1 cut(s) 747
BstDEI CTNAG 3 cut(s) 5, 183, 626
BstF5I GGATG 2 cut(s) 607, 661
BstKTI GATC 2 cut(s) 538, 608
BstMAI GTCTC 1 cut(s) 240
BstMBI GATC 2 cut(s) 535, 605
BstMWI GCNNNNNNNGC 6 cut(s) 38, 117, 212, 422, 498, 692
BstNI CCWGG 2 cut(s) 388, 494
BstNSI RCATGY 1 cut(s) 749
BstSCI CCNGG 2 cut(s) 386, 492
BstV1I GCAGC 3 cut(s) 25, 332, 434
BstX2I RGATCY 1 cut(s) 605
BstYI RGATCY 1 cut(s) 605
BsuRI GGCC 2 cut(s) 206, 612
BtsCI GGATG 2 cut(s) 607, 661
BtsIMutI CAGTG 3 cut(s) 74, 480, 634
BveI ACCTGC 2 cut(s) 416, 448
Cac8I GCNNGC 1 cut(s) 747
Cfr10I RCCGGY 2 cut(s) 28, 831
Cfr13I GGNCC 1 cut(s) 204
Csp6I GTAC 3 cut(s) 187, 210, 730
CviAII CATG 2 cut(s) 533, 746
CviQI GTAC 3 cut(s) 187, 210, 730
DdeI CTNAG 3 cut(s) 5, 183, 626
DpnI GATC 2 cut(s) 537, 607
DpnII GATC 2 cut(s) 535, 605
EaeI YGGCCR 1 cut(s) 610
Eam1104I CTCTTC 2 cut(s) 149, 600
EarI CTCTTC 2 cut(s) 149, 600
Ecl136II GAGCTC 2 cut(s) 85, 144
Eco130I CCWWGG 2 cut(s) 281, 502
Eco24I GRGCYC 3 cut(s) 87, 146, 339
Eco53kI GAGCTC 2 cut(s) 85, 144
Eco57I CTGAAG 1 cut(s) 392
EcoICRI GAGCTC 2 cut(s) 85, 144
EcoRI GAATTC 1 cut(s) 524
EcoRII CCWGG 2 cut(s) 386, 492
EcoT14I CCWWGG 2 cut(s) 281, 502
EcoT38I GRGCYC 3 cut(s) 87, 146, 339
ErhI CCWWGG 2 cut(s) 281, 502
Esp3I CGTCTC 1 cut(s) 240
FaeI CATG 2 cut(s) 536, 749
FatI CATG 2 cut(s) 532, 745
FauI CCCGC 1 cut(s) 265
Fnu4HI GCNGC 4 cut(s) 39, 278, 321, 423
FokI GGATG 2 cut(s) 614, 668
FriOI GRGCYC 3 cut(s) 87, 146, 339
Fsp4HI GCNGC 4 cut(s) 39, 278, 321, 423
FspBI CTAG 4 cut(s) 99, 282, 798, 804
GluI GCNGC 4 cut(s) 39, 278, 321, 423
GsuI CTGGAG 1 cut(s) 370
HaeIII GGCC 2 cut(s) 206, 612
HapII CCGG 5 cut(s) 29, 347, 419, 599, 832
Hin1II CATG 2 cut(s) 536, 749
HindIII AAGCTT 1 cut(s) 641
HinfI GANTC 3 cut(s) 365, 515, 776
HpaII CCGG 5 cut(s) 29, 347, 419, 599, 832
HphI GGTGA 2 cut(s) 18, 670
Hpy166II GTNNAC 1 cut(s) 354
Hpy188I TCNGA 4 cut(s) 82, 135, 184, 636
Hpy188III TCNNGA 4 cut(s) 347, 571, 599, 804
Hpy8I GTNNAC 1 cut(s) 354
HpyAV CCTTC 4 cut(s) 386, 505, 568, 577
HpyCH4III ACNGT 3 cut(s) 69, 234, 331
HpyCH4V TGCA 3 cut(s) 41, 695, 755
HpyF10VI GCNNNNNNNGC 6 cut(s) 38, 117, 212, 422, 498, 692
HpyF3I CTNAG 3 cut(s) 5, 183, 626
Hsp92II CATG 2 cut(s) 536, 749
Kpn2I TCCGGA 2 cut(s) 346, 598
Kzo9I GATC 2 cut(s) 535, 605
LmnI GCTCC 8 cut(s) 82, 136, 250, 349, 421, 447, 589, 828
Lsp1109I GCAGC 3 cut(s) 25, 332, 434
MaeI CTAG 4 cut(s) 99, 282, 798, 804
MaeIII GTNAC 3 cut(s) 296, 475, 554
MalI GATC 2 cut(s) 537, 607
MboI GATC 2 cut(s) 535, 605
MboII GAAGA 5 cut(s) 15, 166, 520, 587, 785
MflI RGATCY 1 cut(s) 605
MhlI GDGCHC 3 cut(s) 87, 146, 339
MlsI TGGCCA 1 cut(s) 612
MluCI AATT 3 cut(s) 483, 524, 715
MluNI TGGCCA 1 cut(s) 612
MlyI GAGTC 1 cut(s) 524
Mox20I TGGCCA 1 cut(s) 612
MroI TCCGGA 2 cut(s) 346, 598
MscI TGGCCA 1 cut(s) 612
MseI TTAA 2 cut(s) 543, 621
MslI CAYNNNNRTG 1 cut(s) 750
Msp20I TGGCCA 1 cut(s) 612
MspI CCGG 5 cut(s) 29, 347, 419, 599, 832
MspR9I CCNGG 2 cut(s) 388, 494
Mva1269I GAATGC 1 cut(s) 374
MvaI CCWGG 2 cut(s) 388, 494
MwoI GCNNNNNNNGC 6 cut(s) 38, 117, 212, 422, 498, 692
NdeII GATC 2 cut(s) 535, 605
NlaIII CATG 2 cut(s) 536, 749
NlaIV GGNNCC 2 cut(s) 591, 830
NmuCI GTSAC 3 cut(s) 296, 475, 554
NspI RCATGY 1 cut(s) 749
PaeI GCATGC 1 cut(s) 749
PaqCI CACCTGC 1 cut(s) 416
PctI GAATGC 1 cut(s) 374
PfeI GAWTC 2 cut(s) 365, 776
PkrI GCNGC 4 cut(s) 40, 279, 322, 424
PleI GAGTC 1 cut(s) 523
PpsI GAGTC 1 cut(s) 523
Psp124BI GAGCTC 2 cut(s) 87, 146
Psp6I CCWGG 2 cut(s) 386, 492
PspGI CCWGG 2 cut(s) 386, 492
PspN4I GGNNCC 2 cut(s) 591, 830
PspPI GGNCC 1 cut(s) 204
PsuI RGATCY 1 cut(s) 605
RsaI GTAC 3 cut(s) 188, 211, 731
RsaNI GTAC 3 cut(s) 187, 210, 730
RseI CAYNNNNRTG 1 cut(s) 750
SacI GAGCTC 2 cut(s) 87, 146
SaqAI TTAA 2 cut(s) 543, 621
SatI GCNGC 4 cut(s) 39, 278, 321, 423
Sau3AI GATC 2 cut(s) 535, 605
Sau96I GGNCC 1 cut(s) 204
ScaI AGTACT 1 cut(s) 188
SchI GAGTC 1 cut(s) 524
ScrFI CCNGG 2 cut(s) 388, 494
SduI GDGCHC 3 cut(s) 87, 146, 339
SgrAI CRCCGGYG 1 cut(s) 28
SmiMI CAYNNNNRTG 1 cut(s) 750
SmlI CTYRAG 1 cut(s) 88
SmoI CTYRAG 1 cut(s) 88
SphI GCATGC 1 cut(s) 749
Sse9I AATT 3 cut(s) 483, 524, 715
SsiI CCGC 4 cut(s) 32, 213, 258, 278
SspMI CTAG 4 cut(s) 99, 282, 798, 804
SstI GAGCTC 2 cut(s) 87, 146
StyD4I CCNGG 2 cut(s) 386, 492
StyI CCWWGG 2 cut(s) 281, 502
TaaI ACNGT 3 cut(s) 69, 234, 331
TaqI TCGA 4 cut(s) 149, 192, 509, 779
TasI AATT 3 cut(s) 483, 524, 715
TatI WGTACW 1 cut(s) 186
TauI GCSGC 1 cut(s) 280
TfiI GAWTC 2 cut(s) 365, 776
Tru1I TTAA 2 cut(s) 543, 621
Tru9I TTAA 2 cut(s) 543, 621
TscAI CASTG 3 cut(s) 74, 480, 634
TseFI GTSAC 3 cut(s) 296, 475, 554
TseI GCWGC 3 cut(s) 38, 320, 422
Tsp45I GTSAC 3 cut(s) 296, 475, 554
TspDTI ATGAA 1 cut(s) 803
TspRI CASTG 3 cut(s) 74, 480, 634
XapI RAATTY 1 cut(s) 524
XbaI TCTAGA 1 cut(s) 803
XceI RCATGY 1 cut(s) 749
XmaJI CCTAGG 1 cut(s) 281
XspI CTAG 4 cut(s) 99, 282, 798, 804
ZrmI AGTACT 1 cut(s) 188
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.