Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0009517

Physical Location & Seq

Genomic Coordinates Reverse (-)

68515178 .. 68517843

Gene Structure 2666 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG378000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGCTGAAGCTAGAGTACTCGCTATCTTCCCCGGTGGCGGTTCAAAACCCTAACCACTCCCTTCCGAGCAAAGCTAGGGTTTTCAGCACCAATAGCTTTGGGTTCGCCCCCAATTCGACGTCGTTTGGGAAGAGACGACTCGCCTTGAAATGTCGTCAGTCTGAGTACTTCGAGCAGCAGAGGCTCACTCCCCCAACTCCCCCGAGCACCGCTGCTTCTGCTGCTCAGAGTCCCTCCGGAGCTACTGCGGTGCCGGCTAGGTTTTATGTGGGACACTCGATATACAAAGGAAAGGCGGCGCTCACCGTAGAGCCCAAAGCTCCAGAGTTTACGGCTTTAGATGTATGCTTTAGTGATTGGTGCTTCATTTTGTTCTTAGGGCATTGTGTTGATTGTATAGAGCCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000018 GO:0000229 GO:0003674 GO:0003676 GO:0003677 GO:0003697 GO:0003700 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005694 GO:0005737 GO:0006139 GO:0006259 GO:0006281 GO:0006355 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006974 GO:0008150 GO:0008152 GO:0009295 GO:0009507 GO:0009508 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009607 GO:0009620 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010628 GO:0010639 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0032204 GO:0032205 GO:0032210 GO:0032211 GO:0033043 GO:0033044 GO:0033554 GO:0034641 GO:0042162 GO:0042646 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043565 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045893 GO:0045910 GO:0045934 GO:0045935 GO:0046483 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051052 GO:0051053 GO:0051128 GO:0051129 GO:0051171 GO:0051172 GO:0051173 GO:0051252 GO:0051254 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0065008 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0098542 GO:0140110 GO:1901360 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:1904356 GO:1904357 GO:2000112 GO:2000113 GO:2000278 GO:2000279 GO:2001141 GO:2001251

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Whirly

Protein Analysis

135

Amino Acids

14.69

Weight (kDa)

8.9

Isoelectric Point (pI)

55.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009517)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14410 AT2G02740
fragaria_vesca	FvH4_4g31850 FvH4_4g31850
malus_domestica	MD13G1078000.v1.1 MD16G1077800.v1.1
prunus_persica	Prupe.1G269100_v2.0.a1
pyrus_communis	pycom16g06720
rosa_chinensis	RchiOBHm_Chr4g0440511
rosa_laevigata	RLG00000006175
rosa_multiflora	Rmu_sc0007648.1_g000008
rosa_roxburghii	Rroxscaffold_5G00381340
rosa_rugosa	Rorug04G0326400
rosa_samantha	Rh4AG378000 Rh4BG390600 Rh4CG405300 Rh4DG384300 Rh5DG089700
rosa_wichuraiana	Rw0G019510 Rw4G032300 Rw4G032350 Rw4G032450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	122
AccB1I	GGYRCC	1 cut(s)	250
AccIII	TCCGGA	1 cut(s)	236
AciI	CCGC	4 cut(s)	38, 210, 248, 296
AcuI	CTGAAG	1 cut(s)	26
AcyI	GRCGYC	1 cut(s)	119
AfaI	GTAC	2 cut(s)	17, 167
AfiI	CCNNNNNNNGG	1 cut(s)	37
AgsI	TTSAA	2 cut(s)	44, 148
AluBI	AGCT	5 cut(s)	10, 74, 96, 242, 320
AluI	AGCT	5 cut(s)	10, 74, 96, 242, 320
Alw21I	GWGCWC	1 cut(s)	209
Alw26I	GTCTC	1 cut(s)	127
Ama87I	CYCGRG	1 cut(s)	202
Aor13HI	TCCGGA	1 cut(s)	236
ApeKI	GCWGC	3 cut(s)	175, 212, 221
AspLEI	GCGC	1 cut(s)	301
AsuC2I	CCSGG	1 cut(s)	32
AsuHPI	GGTGA	1 cut(s)	295
AvaI	CYCGRG	1 cut(s)	202
BanI	GGYRCC	1 cut(s)	250
BanII	GRGCYC	1 cut(s)	315
BarI	GAAGNNNNNNTAC	1 cut(s)	31
Bbv12I	GWGCWC	1 cut(s)	209
BbvI	GCAGC	3 cut(s)	187, 199, 208
BceAI	ACGGC	1 cut(s)	348
BcnI	CCSGG	1 cut(s)	32
BcoDI	GTCTC	1 cut(s)	127
BfaI	CTAG	3 cut(s)	11, 75, 258
BfoI	RGCGCY	1 cut(s)	302
BisI	GCNGC	4 cut(s)	176, 213, 222, 297
BlsI	GCNGC	4 cut(s)	177, 214, 223, 298
BmcAI	AGTACT	2 cut(s)	17, 167
Bme1390I	CCNGG	1 cut(s)	32
BmeT110I	CYCGRG	1 cut(s)	202
BmiI	GGNNCC	1 cut(s)	252
BmrFI	CCNGG	1 cut(s)	32
BplI	GAGNNNNNCTC	2 cut(s)	172, 204
BpmI	CTGGAG	1 cut(s)	306
BpuMI	CCSGG	1 cut(s)	32
BsaHI	GRCGYC	1 cut(s)	119
BsaJI	CCNNGG	1 cut(s)	30
BsaWI	WCCGGW	1 cut(s)	236
Bsc4I	CCNNNNNNNGG	1 cut(s)	37
Bse118I	RCCGGY	1 cut(s)	253
BseAI	TCCGGA	1 cut(s)	236
BseDI	CCNNGG	1 cut(s)	30
BseLI	CCNNNNNNNGG	1 cut(s)	37
BseMII	CTCAG	2 cut(s)	153, 239
BseXI	GCAGC	3 cut(s)	187, 199, 208
BshNI	GGYRCC	1 cut(s)	250
BsiHKAI	GWGCWC	1 cut(s)	209
BsiHKCI	CYCGRG	1 cut(s)	202
BsiSI	CCGG	3 cut(s)	32, 237, 254
BslFI	GGGAC	2 cut(s)	216, 285
BslI	CCNNNNNNNGG	1 cut(s)	37
BsmAI	GTCTC	1 cut(s)	127
BsmBI	CGTCTC	1 cut(s)	127
BsmFI	GGGAC	2 cut(s)	216, 285
BsoBI	CYCGRG	1 cut(s)	202
Bsp1286I	GDGCHC	2 cut(s)	209, 315
Bsp13I	TCCGGA	1 cut(s)	236
BspACI	CCGC	4 cut(s)	38, 210, 248, 296
BspCNI	CTCAG	2 cut(s)	154, 238
BspEI	TCCGGA	1 cut(s)	236
BspLI	GGNNCC	1 cut(s)	252
BspT107I	GGYRCC	1 cut(s)	250
BsrFI	RCCGGY	1 cut(s)	253
BssAI	RCCGGY	1 cut(s)	253
BssECI	CCNNGG	1 cut(s)	30
BssNI	GRCGYC	1 cut(s)	119
Bst4CI	ACNGT	1 cut(s)	307
Bst6I	CTCTTC	1 cut(s)	125
BstACI	GRCGYC	1 cut(s)	119
BstC8I	GCNNGC	1 cut(s)	255
BstDEI	CTNAG	3 cut(s)	162, 225, 376
BstH2I	RGCGCY	1 cut(s)	302
BstHHI	GCGC	1 cut(s)	301
BstMAI	GTCTC	1 cut(s)	127
BstMWI	GCNNNNNNNGC	5 cut(s)	93, 181, 218, 221, 254
BstSCI	CCNGG	1 cut(s)	30
BstV1I	GCAGC	3 cut(s)	187, 199, 208
Cac8I	GCNNGC	1 cut(s)	255
CfoI	GCGC	1 cut(s)	301
Cfr10I	RCCGGY	1 cut(s)	253
Csp6I	GTAC	2 cut(s)	16, 166
CviQI	GTAC	2 cut(s)	16, 166
DdeI	CTNAG	3 cut(s)	162, 225, 376
Eam1104I	CTCTTC	1 cut(s)	125
EarI	CTCTTC	1 cut(s)	125
Eco24I	GRGCYC	1 cut(s)	315
Eco57I	CTGAAG	1 cut(s)	26
Eco88I	CYCGRG	1 cut(s)	202
EcoT38I	GRGCYC	1 cut(s)	315
Esp3I	CGTCTC	1 cut(s)	127
FaiI	YATR	5 cut(s)	267, 283, 346, 398, 406
FaqI	GGGAC	2 cut(s)	216, 285
Fnu4HI	GCNGC	4 cut(s)	176, 213, 222, 297
FriOI	GRGCYC	1 cut(s)	315
Fsp4HI	GCNGC	4 cut(s)	176, 213, 222, 297
FspBI	CTAG	3 cut(s)	11, 75, 258
GlaI	GCGC	1 cut(s)	300
GluI	GCNGC	4 cut(s)	176, 213, 222, 297
GsuI	CTGGAG	1 cut(s)	306
HaeII	RGCGCY	1 cut(s)	302
HapII	CCGG	3 cut(s)	32, 237, 254
HhaI	GCGC	1 cut(s)	301
Hin1I	GRCGYC	1 cut(s)	119
Hin6I	GCGC	1 cut(s)	299
HinP1I	GCGC	1 cut(s)	299
HinfI	GANTC	2 cut(s)	138, 229
HpaII	CCGG	3 cut(s)	32, 237, 254
HphI	GGTGA	1 cut(s)	295
Hpy166II	GTNNAC	1 cut(s)	330
Hpy188I	TCNGA	3 cut(s)	66, 163, 228
Hpy188III	TCNNGA	2 cut(s)	237, 323
Hpy8I	GTNNAC	1 cut(s)	330
Hpy99I	CGWCG	2 cut(s)	121, 124
HpyAV	CCTTC	1 cut(s)	71
HpyCH4III	ACNGT	1 cut(s)	307
HpyCH4IV	ACGT	1 cut(s)	119
HpyF10VI	GCNNNNNNNGC	5 cut(s)	93, 181, 218, 221, 254
HpyF3I	CTNAG	3 cut(s)	162, 225, 376
HpySE526I	ACGT	1 cut(s)	119
Hsp92I	GRCGYC	1 cut(s)	119
HspAI	GCGC	1 cut(s)	299
Kpn2I	TCCGGA	1 cut(s)	236
KroI	GCCGGC	1 cut(s)	253
KroNI	GCCGGC	1 cut(s)	255
LmnI	GCTCC	2 cut(s)	239, 325
LpnPI	CCDG	4 cut(s)	45, 250, 267, 336
Lsp1109I	GCAGC	3 cut(s)	187, 199, 208
MaeI	CTAG	3 cut(s)	11, 75, 258
MaeII	ACGT	1 cut(s)	119
MboII	GAAGA	2 cut(s)	18, 142
MhlI	GDGCHC	2 cut(s)	209, 315
MluCI	AATT	1 cut(s)	112
MlyI	GAGTC	2 cut(s)	132, 238
MnlI	CCTC	2 cut(s)	174, 244
MroI	TCCGGA	1 cut(s)	236
MroNI	GCCGGC	1 cut(s)	253
MspA1I	CMGCKG	1 cut(s)	212
MspI	CCGG	3 cut(s)	32, 237, 254
MspR9I	CCNGG	1 cut(s)	32
MwoI	GCNNNNNNNGC	5 cut(s)	93, 181, 218, 221, 254
NaeI	GCCGGC	1 cut(s)	255
NciI	CCSGG	1 cut(s)	32
NgoMIV	GCCGGC	1 cut(s)	253
NlaIV	GGNNCC	1 cut(s)	252
PdiI	GCCGGC	1 cut(s)	255
PkrI	GCNGC	4 cut(s)	177, 214, 223, 298
PleI	GAGTC	2 cut(s)	132, 237
PpsI	GAGTC	2 cut(s)	132, 237
PspN4I	GGNNCC	1 cut(s)	252
RsaI	GTAC	2 cut(s)	17, 167
RsaNI	GTAC	2 cut(s)	16, 166
SatI	GCNGC	4 cut(s)	176, 213, 222, 297
ScaI	AGTACT	2 cut(s)	17, 167
SchI	GAGTC	2 cut(s)	132, 238
ScrFI	CCNGG	1 cut(s)	32
SduI	GDGCHC	2 cut(s)	209, 315
SetI	ASST	7 cut(s)	12, 76, 98, 122, 244, 263, 322
Sse9I	AATT	1 cut(s)	112
SsiI	CCGC	4 cut(s)	38, 210, 248, 296
SspMI	CTAG	3 cut(s)	11, 75, 258
StyD4I	CCNGG	1 cut(s)	30
TaaI	ACNGT	1 cut(s)	307
TaiI	ACGT	1 cut(s)	122
TaqI	TCGA	3 cut(s)	116, 171, 278
TasI	AATT	1 cut(s)	112
TatI	WGTACW	2 cut(s)	15, 165
TauI	GCSGC	1 cut(s)	299
TseI	GCWGC	3 cut(s)	175, 212, 221
TspDTI	ATGAA	1 cut(s)	355
XspI	CTAG	3 cut(s)	11, 75, 258
ZraI	GACGTC	1 cut(s)	120
ZrmI	AGTACT	2 cut(s)	17, 167

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.