Rh4DG384300

Single-stranded DNA-binding protein WHY1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0009517
Physical Location & Seq
Reverse (-)
60186554 .. 60189175
2622 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG384300.1

Sequence Viewer

Length: 492 bp
ATGATTTGGTGTCTTCTGCAGTCGGGAGCATTCAAAATGTCGAGGGAAGGCTTTGTGCTACTTCAGTTTGCTCCTGCAGCAGGTGTGCGTGTGTATGATTGGAGCAGAAAGCAGGTATTTTCGCTATCAGTGACAGAAATTGGAAGCATAGTGAGCCTTGGTGCGAGGGAGTCCTGTGAATTTTTCCATGACCCCTTTAAGGGGAAAAGTGAGGAAGGCAAGGTCAGGAAGGTGTTGAAGGTGGAACCTCTTCCAGATGGATCTGGCCGTTTCTTTAACCTAAGTGTTCAAAACAAGCTTATCAACTTGGACGAGAACATTTATATTCCTGTCACCAGAGCAGAGTTTGCTGTTCTCAACTCTGCTTTCAATTATATCTTGCCGTATCTTATAGGTTGGCATGCATATGCAAACTCTATAAAGCCAGAAGATATGAGCCGTGTGAATAACGCCACTCCGAGATATGGAGGAGACTTTGAATGGAGCCGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000018 GO:0000229 GO:0003674 GO:0003676 GO:0003677 GO:0003697 GO:0003700 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005694 GO:0005737 GO:0006139 GO:0006259 GO:0006281 GO:0006355 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006974 GO:0008150 GO:0008152 GO:0009295 GO:0009507 GO:0009508 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009607 GO:0009620 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010628 GO:0010639 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0032204 GO:0032205 GO:0032210 GO:0032211 GO:0033043 GO:0033044 GO:0033554 GO:0034641 GO:0042162 GO:0042646 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043565 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045893 GO:0045910 GO:0045934 GO:0045935 GO:0046483 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051052 GO:0051053 GO:0051128 GO:0051129 GO:0051171 GO:0051172 GO:0051173 GO:0051252 GO:0051254 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0065008 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0098542 GO:0140110 GO:1901360 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:1904356 GO:1904357 GO:2000112 GO:2000113 GO:2000278 GO:2000279 GO:2001141 GO:2001251
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Whirly

Protein Analysis

163

Amino Acids

18.49

Weight (kDa)

8.55

Isoelectric Point (pI)

47.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Whirly PF08536 6 - 121 1.6e-52 Whirly transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0009517)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G14410 AT2G02740
fragaria_vesca FvH4_4g31850 FvH4_4g31850
malus_domestica MD13G1078000.v1.1 MD16G1077800.v1.1
prunus_persica Prupe.1G269100_v2.0.a1
pyrus_communis pycom16g06720
rosa_chinensis RchiOBHm_Chr4g0440511
rosa_laevigata RLG00000006175
rosa_multiflora Rmu_sc0007648.1_g000008
rosa_roxburghii Rroxscaffold_5G00381340
rosa_rugosa Rorug04G0326400
rosa_samantha Rh4AG378000 Rh4BG390600 Rh4CG405300 Rh4DG384300 Rh5DG089700
rosa_wichuraiana Rw0G019510 Rw4G032300 Rw4G032350 Rw4G032450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 71
Acc36I ACCTGC 2 cut(s) 71, 103
AclWI GGATC 1 cut(s) 268
AcoI YGGCCR 1 cut(s) 265
AcsI RAATTY 1 cut(s) 179
AcuI CTGAAG 1 cut(s) 47
AfiI CCNNNNNNNGG 5 cut(s) 80, 199, 200, 201, 464
AgsI TTSAA 5 cut(s) 34, 238, 290, 370, 479
AluBI AGCT 1 cut(s) 298
AluI AGCT 1 cut(s) 298
Alw26I GTCTC 1 cut(s) 465
AlwI GGATC 1 cut(s) 268
AoxI GGCC 1 cut(s) 265
ApeKI GCWGC 1 cut(s) 77
ApoI RAATTY 1 cut(s) 179
Asp700I GAANNNNTTC 1 cut(s) 249
AsuHPI GGTGA 1 cut(s) 325
BbsI GAAGAC 1 cut(s) 5
BbvI GCAGC 1 cut(s) 89
BccI CCATC 1 cut(s) 251
BceAI ACGGC 3 cut(s) 252, 367, 423
BcoDI GTCTC 1 cut(s) 465
BfmI CTRYAG 2 cut(s) 17, 75
BfuAI ACCTGC 2 cut(s) 71, 103
BisI GCNGC 1 cut(s) 78
BlsI GCNGC 1 cut(s) 79
BmiI GGNNCC 2 cut(s) 246, 485
BpiI GAAGAC 1 cut(s) 5
BsaJI CCNNGG 1 cut(s) 157
Bsc4I CCNNNNNNNGG 5 cut(s) 80, 199, 200, 201, 464
Bse118I RCCGGY 1 cut(s) 486
BseDI CCNNGG 1 cut(s) 157
BseLI CCNNNNNNNGG 5 cut(s) 80, 199, 200, 201, 464
BseRI GAGGAG 1 cut(s) 483
BseXI GCAGC 1 cut(s) 89
BshFI GGCC 1 cut(s) 267
BsiSI CCGG 1 cut(s) 487
BslI CCNNNNNNNGG 5 cut(s) 80, 199, 200, 201, 464
BsmAI GTCTC 1 cut(s) 465
BsmI GAATGC 1 cut(s) 29
BsnI GGCC 1 cut(s) 267
Bsp143I GATC 1 cut(s) 260
BspANI GGCC 1 cut(s) 267
BspLI GGNNCC 2 cut(s) 246, 485
BspMAI CTGCAG 2 cut(s) 21, 79
BspMI ACCTGC 2 cut(s) 71, 103
BspPI GGATC 1 cut(s) 268
BsrFI RCCGGY 1 cut(s) 486
BssAI RCCGGY 1 cut(s) 486
BssECI CCNNGG 1 cut(s) 157
BssMI GATC 1 cut(s) 260
BssT1I CCWWGG 1 cut(s) 157
Bst6I CTCTTC 1 cut(s) 255
BstAPI GCANNNNNTGC 1 cut(s) 347
BstC8I GCNNGC 1 cut(s) 402
BstDEI CTNAG 1 cut(s) 281
BstENI CCTNNNNNAGG 1 cut(s) 78
BstKTI GATC 1 cut(s) 263
BstMAI GTCTC 1 cut(s) 465
BstMBI GATC 1 cut(s) 260
BstMWI GCNNNNNNNGC 3 cut(s) 77, 153, 347
BstNSI RCATGY 1 cut(s) 404
BstSFI CTRYAG 2 cut(s) 17, 75
BstV1I GCAGC 1 cut(s) 89
BstV2I GAAGAC 1 cut(s) 5
BstX2I RGATCY 1 cut(s) 260
BstYI RGATCY 1 cut(s) 260
BsuRI GGCC 1 cut(s) 267
BtsIMutI CAGTG 1 cut(s) 135
BveI ACCTGC 2 cut(s) 71, 103
Cac8I GCNNGC 1 cut(s) 402
Cfr10I RCCGGY 1 cut(s) 486
CviAII CATG 2 cut(s) 188, 401
CviJI RGCY 7 cut(s) 51, 156, 267, 298, 424, 438, 486
CviKI_1 RGCY 7 cut(s) 51, 156, 267, 298, 424, 438, 486
DdeI CTNAG 1 cut(s) 281
DpnI GATC 1 cut(s) 262
DpnII GATC 1 cut(s) 260
EaeI YGGCCR 1 cut(s) 265
Eam1104I CTCTTC 1 cut(s) 255
EarI CTCTTC 1 cut(s) 255
Eco130I CCWWGG 1 cut(s) 157
Eco57I CTGAAG 1 cut(s) 47
EcoNI CCTNNNNNAGG 1 cut(s) 78
EcoT14I CCWWGG 1 cut(s) 157
EcoT22I ATGCAT 1 cut(s) 406
ErhI CCWWGG 1 cut(s) 157
FaeI CATG 2 cut(s) 191, 404
FatI CATG 2 cut(s) 187, 400
FauNDI CATATG 1 cut(s) 406
Fnu4HI GCNGC 1 cut(s) 78
Fsp4HI GCNGC 1 cut(s) 78
GluI GCNGC 1 cut(s) 78
HaeIII GGCC 1 cut(s) 267
HapII CCGG 1 cut(s) 487
Hin1II CATG 2 cut(s) 191, 404
HindIII AAGCTT 1 cut(s) 296
HinfI GANTC 1 cut(s) 170
HpaII CCGG 1 cut(s) 487
HphI GGTGA 1 cut(s) 325
Hpy188I TCNGA 1 cut(s) 459
Hpy188III TCNNGA 3 cut(s) 24, 226, 254
HpyAV CCTTC 4 cut(s) 41, 209, 223, 232
HpyCH4V TGCA 4 cut(s) 19, 77, 404, 410
HpyF10VI GCNNNNNNNGC 3 cut(s) 77, 153, 347
HpyF3I CTNAG 1 cut(s) 281
Hsp92II CATG 2 cut(s) 191, 404
Kzo9I GATC 1 cut(s) 260
LmnI GCTCC 4 cut(s) 26, 76, 102, 483
Lsp1109I GCAGC 1 cut(s) 89
MaeIII GTNAC 2 cut(s) 130, 331
MalI GATC 1 cut(s) 262
MboI GATC 1 cut(s) 260
MboII GAAGA 3 cut(s) 5, 242, 440
MflI RGATCY 1 cut(s) 260
MluCI AATT 3 cut(s) 138, 179, 370
MlyI GAGTC 1 cut(s) 179
MnlI CCTC 5 cut(s) 36, 159, 205, 258, 461
Mph1103I ATGCAT 1 cut(s) 406
MroXI GAANNNNTTC 1 cut(s) 249
MseI TTAA 2 cut(s) 198, 276
MslI CAYNNNNRTG 1 cut(s) 405
MspI CCGG 1 cut(s) 487
Mva1269I GAATGC 1 cut(s) 29
MwoI GCNNNNNNNGC 3 cut(s) 77, 153, 347
NdeI CATATG 1 cut(s) 406
NdeII GATC 1 cut(s) 260
NlaIII CATG 2 cut(s) 191, 404
NlaIV GGNNCC 2 cut(s) 246, 485
NmuCI GTSAC 2 cut(s) 130, 331
NsiI ATGCAT 1 cut(s) 406
NspI RCATGY 1 cut(s) 404
PaeI GCATGC 1 cut(s) 404
PaqCI CACCTGC 1 cut(s) 71
PctI GAATGC 1 cut(s) 29
PdmI GAANNNNTTC 1 cut(s) 249
PkrI GCNGC 1 cut(s) 79
PleI GAGTC 1 cut(s) 178
PpsI GAGTC 1 cut(s) 178
PspN4I GGNNCC 2 cut(s) 246, 485
PstI CTGCAG 2 cut(s) 21, 79
PsuI RGATCY 1 cut(s) 260
RseI CAYNNNNRTG 1 cut(s) 405
SaqAI TTAA 2 cut(s) 198, 276
SatI GCNGC 1 cut(s) 78
Sau3AI GATC 1 cut(s) 260
SchI GAGTC 1 cut(s) 179
SetI ASST 9 cut(s) 85, 117, 225, 234, 243, 250, 282, 300, 397
SfcI CTRYAG 2 cut(s) 17, 75
SmiMI CAYNNNNRTG 1 cut(s) 405
SphI GCATGC 1 cut(s) 404
Sse9I AATT 3 cut(s) 138, 179, 370
StyI CCWWGG 1 cut(s) 157
TaqI TCGA 1 cut(s) 41
TasI AATT 3 cut(s) 138, 179, 370
Tru1I TTAA 2 cut(s) 198, 276
Tru9I TTAA 2 cut(s) 198, 276
TscAI CASTG 1 cut(s) 135
TseFI GTSAC 2 cut(s) 130, 331
TseI GCWGC 1 cut(s) 77
Tsp45I GTSAC 2 cut(s) 130, 331
TspRI CASTG 1 cut(s) 135
XagI CCTNNNNNAGG 1 cut(s) 78
XapI RAATTY 1 cut(s) 179
XceI RCATGY 1 cut(s) 404
XmnI GAANNNNTTC 1 cut(s) 249
Zsp2I ATGCAT 1 cut(s) 406
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.