Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0015229

Physical Location & Seq

Genomic Coordinates Reverse (-)

5193284 .. 5194214

Gene Structure 931 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G15100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

ATGGGGCTACAAGGTCAGCTAAGTGACGTCTCTTCCGATTCAATCCCTCTTATGCTCCTCTCTCTCCTCGCCGTCTTCATCAACCATCTCCGATCTTTCCTCCTCCGTCTCACCTCTAAATCAAATCCTAATCTCCCCGTAGACGATGTCTCTATAGCATCGGGACTAGCCAACATAATCGTTCTCGCCGATCAGCTTAGTTTGAATCGGTTATTCTCGTACCGGTGCGGTGACGGAGGTGGTGGCGGCTCCGATTGTGTTGTGTGTTTGTCGAAGTTAAAGGAAGGTGAAGAGGTGAGGAAGCTGGAATGTCGACACGTGTTCCACAAGAAGTGTTTGGAAGGATGGCTTCATCAATTCAATTTCACTTGTCCTCTTTGTAGATCTGCTTTGGTTTCCGATGATTGCGTCTCTAAAACGCAGCGTAGCGTTGGGAGGGATTTGATCTCGTGTTTCTCTCTCCACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009628 GO:0009651 GO:0009787 GO:0009789 GO:0009966 GO:0009967 GO:0009987 GO:0010498 GO:0010646 GO:0010647 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0023051 GO:0023056 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0047484 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051603 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0080134 GO:0140096 GO:1901419 GO:1901421 GO:1901564 GO:1901565 GO:1901575 GO:1905957 GO:1905959

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

155

Amino Acids

16.98

Weight (kDa)

7.56

Isoelectric Point (pI)

40.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	85 - 128	1.6e-13	Ring finger domain
zf-RING_11	PF17123	85 - 113	1.1e-11	RING-like zinc finger
zf-rbx1	PF12678	86 - 128	1.3e-08	RING-H2 zinc finger domain
zf-C3HC4_2	PF13923	86 - 127	2.9e-08	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4	PF00097	86 - 127	5.1e-07	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0015229)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15100
fragaria_vesca	FvH4_4g26470
malus_domestica	MD13G1033600.v1.1 MD16G1035500.v1.1
prunus_persica	Prupe.1G319200_v2.0.a1
pyrus_communis	pycom13g02900 pycom16g03040
rosa_chinensis	RchiOBHm_Chr4g0434111
rosa_laevigata	RLG00000006699
rosa_multiflora	Rmu_sc0000352.1_g000035
rosa_roxburghii	Rroxscaffold_5G00375510
rosa_rugosa	Rorug04G0274200
rosa_samantha	Rh4BG336800 Rh4CG352300 Rh4DG332900
rosa_wichuraiana	Rw4G028550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	30
AccI	GTMKAC	2 cut(s)	141, 313
AciI	CCGC	2 cut(s)	228, 246
AcvI	CACGTG	1 cut(s)	319
AcyI	GRCGYC	1 cut(s)	27
AfaI	GTAC	1 cut(s)	221
AflIII	ACRYGT	2 cut(s)	316, 318
AgeI	ACCGGT	1 cut(s)	222
AgsI	TTSAA	3 cut(s)	42, 205, 361
AluBI	AGCT	3 cut(s)	19, 196, 304
AluI	AGCT	3 cut(s)	19, 196, 304
Alw26I	GTCTC	4 cut(s)	34, 113, 154, 415
ApeKI	GCWGC	1 cut(s)	421
AsiGI	ACCGGT	1 cut(s)	222
AsuHPI	GGTGA	4 cut(s)	103, 242, 299, 307
BauI	CACGAG	1 cut(s)	448
BbrPI	CACGTG	1 cut(s)	319
BbsI	GAAGAC	1 cut(s)	67
BbvI	GCAGC	1 cut(s)	433
BccI	CCATC	2 cut(s)	93, 339
BceAI	ACGGC	1 cut(s)	56
BcoDI	GTCTC	4 cut(s)	34, 113, 154, 415
BfaI	CTAG	1 cut(s)	167
BfmI	CTRYAG	1 cut(s)	153
BglII	AGATCT	1 cut(s)	383
BisI	GCNGC	2 cut(s)	247, 422
BlsI	GCNGC	2 cut(s)	248, 423
BmiI	GGNNCC	1 cut(s)	250
BmsI	GCATC	1 cut(s)	167
BpiI	GAAGAC	1 cut(s)	67
BsaAI	YACGTR	1 cut(s)	319
BsaHI	GRCGYC	1 cut(s)	27
BsaWI	WCCGGW	1 cut(s)	222
Bse118I	RCCGGY	1 cut(s)	222
BseGI	GGATG	1 cut(s)	350
BseRI	GAGGAG	3 cut(s)	47, 56, 92
BseXI	GCAGC	1 cut(s)	433
BshTI	ACCGGT	1 cut(s)	222
BsiSI	CCGG	1 cut(s)	223
BslFI	GGGAC	1 cut(s)	177
BsmAI	GTCTC	4 cut(s)	34, 113, 154, 415
BsmBI	CGTCTC	3 cut(s)	34, 113, 415
BsmFI	GGGAC	1 cut(s)	177
Bsp143I	GATC	4 cut(s)	92, 190, 383, 444
BspACI	CCGC	2 cut(s)	228, 246
BspLI	GGNNCC	1 cut(s)	250
BsrFI	RCCGGY	1 cut(s)	222
BssAI	RCCGGY	1 cut(s)	222
BssMI	GATC	4 cut(s)	92, 190, 383, 444
BssNI	GRCGYC	1 cut(s)	27
BssSI	CACGAG	1 cut(s)	448
Bst2BI	CACGAG	1 cut(s)	448
Bst6I	CTCTTC	2 cut(s)	37, 285
BstACI	GRCGYC	1 cut(s)	27
BstBAI	YACGTR	1 cut(s)	319
BstDEI	CTNAG	2 cut(s)	20, 197
BstF5I	GGATG	1 cut(s)	350
BstKTI	GATC	4 cut(s)	95, 193, 386, 447
BstMAI	GTCTC	4 cut(s)	34, 113, 154, 415
BstMBI	GATC	4 cut(s)	92, 190, 383, 444
BstSFI	CTRYAG	1 cut(s)	153
BstV1I	GCAGC	1 cut(s)	433
BstV2I	GAAGAC	1 cut(s)	67
BstX2I	RGATCY	1 cut(s)	383
BstYI	RGATCY	1 cut(s)	383
BtsCI	GGATG	1 cut(s)	350
BtsIMutI	CAGTG	1 cut(s)	463
Cfr10I	RCCGGY	1 cut(s)	222
CseI	GACGC	1 cut(s)	397
Csp6I	GTAC	1 cut(s)	220
CspAI	ACCGGT	1 cut(s)	222
CviJI	RGCY	7 cut(s)	7, 19, 170, 196, 249, 304, 349
CviKI_1	RGCY	7 cut(s)	7, 19, 170, 196, 249, 304, 349
CviQI	GTAC	1 cut(s)	220
DdeI	CTNAG	2 cut(s)	20, 197
DpnI	GATC	4 cut(s)	94, 192, 385, 446
DpnII	GATC	4 cut(s)	92, 190, 383, 444
Eam1104I	CTCTTC	2 cut(s)	37, 285
EarI	CTCTTC	2 cut(s)	37, 285
Eco72I	CACGTG	1 cut(s)	319
Esp3I	CGTCTC	3 cut(s)	34, 113, 415
FaiI	YATR	3 cut(s)	53, 155, 176
FalI	AAGNNNNNCTT	2 cut(s)	333, 365
FaqI	GGGAC	1 cut(s)	177
FblI	GTMKAC	2 cut(s)	141, 313
Fnu4HI	GCNGC	2 cut(s)	247, 422
FokI	GGATG	1 cut(s)	357
Fsp4HI	GCNGC	2 cut(s)	247, 422
FspBI	CTAG	1 cut(s)	167
GluI	GCNGC	2 cut(s)	247, 422
HapII	CCGG	1 cut(s)	223
HgaI	GACGC	1 cut(s)	397
Hin1I	GRCGYC	1 cut(s)	27
HincII	GTYRAC	1 cut(s)	314
HindII	GTYRAC	1 cut(s)	314
HinfI	GANTC	2 cut(s)	38, 205
HpaII	CCGG	1 cut(s)	223
HphI	GGTGA	4 cut(s)	103, 242, 299, 307
Hpy166II	GTNNAC	2 cut(s)	142, 314
Hpy188I	TCNGA	4 cut(s)	37, 92, 253, 400
Hpy188III	TCNNGA	1 cut(s)	162
Hpy8I	GTNNAC	2 cut(s)	142, 314
HpyAV	CCTTC	2 cut(s)	278, 335
HpyCH4IV	ACGT	2 cut(s)	27, 318
HpyF3I	CTNAG	2 cut(s)	20, 197
HpySE526I	ACGT	2 cut(s)	27, 318
Hsp92I	GRCGYC	1 cut(s)	27
Kzo9I	GATC	4 cut(s)	92, 190, 383, 444
LmnI	GCTCC	2 cut(s)	60, 254
LpnPI	CCDG	2 cut(s)	236, 290
Lsp1109I	GCAGC	1 cut(s)	433
LweI	GCATC	1 cut(s)	167
MaeI	CTAG	1 cut(s)	167
MaeII	ACGT	2 cut(s)	27, 318
MaeIII	GTNAC	2 cut(s)	23, 230
MalI	GATC	4 cut(s)	94, 192, 385, 446
MboI	GATC	4 cut(s)	92, 190, 383, 444
MboII	GAAGA	3 cut(s)	24, 67, 302
MflI	RGATCY	1 cut(s)	383
MluCI	AATT	2 cut(s)	356, 361
MseI	TTAA	1 cut(s)	278
MspI	CCGG	1 cut(s)	223
NdeII	GATC	4 cut(s)	92, 190, 383, 444
NlaIV	GGNNCC	1 cut(s)	250
NmuCI	GTSAC	2 cut(s)	23, 230
PcsI	WCGNNNNNNNCGW	2 cut(s)	33, 186
PfeI	GAWTC	2 cut(s)	38, 205
PflFI	GACNNNGTC	1 cut(s)	146
PinAI	ACCGGT	1 cut(s)	222
PkrI	GCNGC	2 cut(s)	248, 423
PmaCI	CACGTG	1 cut(s)	319
PmlI	CACGTG	1 cut(s)	319
Ppu21I	YACGTR	1 cut(s)	319
PspCI	CACGTG	1 cut(s)	319
PspN4I	GGNNCC	1 cut(s)	250
PsuI	RGATCY	1 cut(s)	383
PsyI	GACNNNGTC	1 cut(s)	146
RsaI	GTAC	1 cut(s)	221
RsaNI	GTAC	1 cut(s)	220
SalI	GTCGAC	1 cut(s)	312
SaqAI	TTAA	1 cut(s)	278
SatI	GCNGC	2 cut(s)	247, 422
Sau3AI	GATC	4 cut(s)	92, 190, 383, 444
SfaNI	GCATC	1 cut(s)	167
SfcI	CTRYAG	1 cut(s)	153
Sse9I	AATT	2 cut(s)	356, 361
SsiI	CCGC	2 cut(s)	228, 246
SspMI	CTAG	1 cut(s)	167
TaiI	ACGT	2 cut(s)	30, 321
TaqI	TCGA	2 cut(s)	272, 313
TasI	AATT	2 cut(s)	356, 361
TauI	GCSGC	1 cut(s)	249
TfiI	GAWTC	2 cut(s)	38, 205
Tru1I	TTAA	1 cut(s)	278
Tru9I	TTAA	1 cut(s)	278
TseFI	GTSAC	2 cut(s)	23, 230
TseI	GCWGC	1 cut(s)	421
Tsp45I	GTSAC	2 cut(s)	23, 230
TspDTI	ATGAA	2 cut(s)	67, 341
TspGWI	ACGGA	2 cut(s)	95, 249
Tth111I	GACNNNGTC	1 cut(s)	146
XmiI	GTMKAC	2 cut(s)	141, 313
XspI	CTAG	1 cut(s)	167
ZraI	GACGTC	1 cut(s)	28

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.