Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0015229

Physical Location & Seq

Genomic Coordinates Forward (+)

1984712 .. 1985224

Gene Structure 513 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g02900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

ATGGGGTTACAAAGCCAGCTCAACGACGTCTCGTCCGACTCCATCCCCCTCTTACTCATCGCACTCATCGCCAGCTCCATCAACCACCTCCGGTCCTCCCTCCTCGCCCTCCTCCATTTTCTGGGCCTCAGCCCCCATCCCAGTCCAGGATCAGACTACGACGAAGGCCTTGCTGCCGCCCCGGCCGTGGGCTCGGGACTCGCGGGCCTCGTTATCTTGTCCGACCAGCTCGCCCTCAACCGCCACTTATCCTATCCATACGACCGCGACGACGCCGTTGCCACCGCAGGGGATTGCAATTGCGTGGTGTGCTTGTGCACCTTGGGGGATGGTGAGCAGGTCCGCATGCTCCAGTGCCGCCATGTGTTCCACAAGCACTGCTTCGACTCCTGGCTCGACCACCTCAACTTCAATTGCCCTCTCTGCCGCTCTCCCGTCGTACACCGCGATGGCGTCGCGCTCACGCGCCGCCGACTCTCCCGCGACCTCCTCCTCTGGTTTTCCATCAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009628 GO:0009651 GO:0009787 GO:0009789 GO:0009966 GO:0009967 GO:0009987 GO:0010498 GO:0010646 GO:0010647 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0023051 GO:0023056 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0047484 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051603 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0080134 GO:0140096 GO:1901419 GO:1901421 GO:1901564 GO:1901565 GO:1901575 GO:1905957 GO:1905959

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

171

Amino Acids

18.54

Weight (kDa)

6.09

Isoelectric Point (pI)

61.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	100 - 143	3.2e-11	Ring finger domain
zf-RING_11	PF17123	100 - 127	2.9e-08	RING-like zinc finger
zf-C3HC4_2	PF13923	101 - 142	2.6e-07	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4	PF00097	101 - 142	9.6e-06	Zinc finger, C3HC4 type (RING finger)
zf-rbx1	PF12678	113 - 143	6e-06	RING-H2 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015229)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15100
fragaria_vesca	FvH4_4g26470
malus_domestica	MD13G1033600.v1.1 MD16G1035500.v1.1
prunus_persica	Prupe.1G319200_v2.0.a1
pyrus_communis	pycom13g02900 pycom16g03040
rosa_chinensis	RchiOBHm_Chr4g0434111
rosa_laevigata	RLG00000006699
rosa_multiflora	Rmu_sc0000352.1_g000035
rosa_roxburghii	Rroxscaffold_5G00375510
rosa_rugosa	Rorug04G0274200
rosa_samantha	Rh4BG336800 Rh4CG352300 Rh4DG332900
rosa_wichuraiana	Rw4G028550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	30
Acc36I	ACCTGC	1 cut(s)	328
AccB7I	CCANNNNNTGG	1 cut(s)	121
AccBSI	CCGCTC	1 cut(s)	429
AccII	CGCG	6 cut(s)	203, 267, 447, 458, 466, 483
AclWI	GGATC	1 cut(s)	157
AcoI	YGGCCR	1 cut(s)	183
AcyI	GRCGYC	3 cut(s)	27, 273, 453
AfaI	GTAC	1 cut(s)	441
AfiI	CCNNNNNNNGG	5 cut(s)	121, 146, 187, 188, 288
AgsI	TTSAA	1 cut(s)	412
AhdI	GACNNNNNGTC	1 cut(s)	31
AjnI	CCWGG	2 cut(s)	145, 389
AluBI	AGCT	4 cut(s)	19, 75, 229, 510
AluI	AGCT	4 cut(s)	19, 75, 229, 510
Alw21I	GWGCWC	1 cut(s)	320
Alw26I	GTCTC	1 cut(s)	34
Alw44I	GTGCAC	1 cut(s)	316
AlwI	GGATC	1 cut(s)	157
Ama87I	CYCGRG	1 cut(s)	193
AoxI	GGCC	4 cut(s)	124, 166, 183, 205
ApaLI	GTGCAC	1 cut(s)	316
ApeKI	GCWGC	1 cut(s)	173
AspLEI	GCGC	2 cut(s)	460, 468
AspS9I	GGNCC	4 cut(s)	93, 124, 205, 340
AsuC2I	CCSGG	1 cut(s)	182
AsuHPI	GGTGA	1 cut(s)	344
AvaI	CYCGRG	1 cut(s)	193
AvaII	GGWCC	2 cut(s)	93, 340
BaeGI	GKGCMC	1 cut(s)	320
BanII	GRGCYC	1 cut(s)	194
Bbv12I	GWGCWC	1 cut(s)	320
BbvCI	CCTCAGC	1 cut(s)	128
BbvI	GCAGC	1 cut(s)	160
BccI	CCATC	6 cut(s)	50, 86, 144, 323, 443, 512
BceAI	ACGGC	2 cut(s)	170, 260
BcgI	CGANNNNNNTGC	4 cut(s)	152, 186, 260, 294
BciT130I	CCWGG	2 cut(s)	147, 391
BcnI	CCSGG	1 cut(s)	182
BcoDI	GTCTC	1 cut(s)	34
BfuAI	ACCTGC	1 cut(s)	328
BglI	GCCNNNNNGGC	1 cut(s)	182
BisI	GCNGC	5 cut(s)	174, 177, 358, 427, 469
BlsI	GCNGC	5 cut(s)	175, 178, 359, 428, 470
Bme1390I	CCNGG	3 cut(s)	147, 182, 391
Bme18I	GGWCC	2 cut(s)	93, 340
BmeRI	GACNNNNNGTC	1 cut(s)	31
BmeT110I	CYCGRG	1 cut(s)	193
BmgT120I	GGNCC	4 cut(s)	93, 124, 205, 340
BmrFI	CCNGG	3 cut(s)	147, 182, 391
BmrI	ACTGGG	1 cut(s)	135
BmuI	ACTGGG	1 cut(s)	135
BpmI	CTGGAG	1 cut(s)	335
Bpu10I	CCTNAGC	1 cut(s)	128
BpuMI	CCSGG	1 cut(s)	182
BsaHI	GRCGYC	3 cut(s)	27, 273, 453
BsaJI	CCNNGG	3 cut(s)	180, 186, 321
BsaWI	WCCGGW	1 cut(s)	90
Bsc4I	CCNNNNNNNGG	5 cut(s)	121, 146, 187, 188, 288
Bse1I	ACTGG	2 cut(s)	141, 352
BseBI	CCWGG	2 cut(s)	147, 391
BseDI	CCNNGG	3 cut(s)	180, 186, 321
BseGI	GGATG	3 cut(s)	42, 136, 334
BseLI	CCNNNNNNNGG	5 cut(s)	121, 146, 187, 188, 288
BseMII	CTCAG	1 cut(s)	142
BseNI	ACTGG	2 cut(s)	141, 352
BseRI	GAGGAG	4 cut(s)	92, 101, 479, 482
BseSI	GKGCMC	1 cut(s)	320
BseX3I	CGGCCG	1 cut(s)	183
BseXI	GCAGC	1 cut(s)	160
Bsh1236I	CGCG	6 cut(s)	203, 267, 447, 458, 466, 483
Bsh1285I	CGRYCG	2 cut(s)	186, 265
BshFI	GGCC	4 cut(s)	126, 168, 185, 207
BsiEI	CGRYCG	2 cut(s)	186, 265
BsiHKAI	GWGCWC	1 cut(s)	320
BsiHKCI	CYCGRG	1 cut(s)	193
BsiSI	CCGG	2 cut(s)	91, 182
BslFI	GGGAC	1 cut(s)	210
BslI	CCNNNNNNNGG	5 cut(s)	121, 146, 187, 188, 288
BsmAI	GTCTC	1 cut(s)	34
BsmBI	CGTCTC	1 cut(s)	34
BsmFI	GGGAC	1 cut(s)	210
BsnI	GGCC	4 cut(s)	126, 168, 185, 207
BsoBI	CYCGRG	1 cut(s)	193
Bsp1286I	GDGCHC	2 cut(s)	194, 320
Bsp143I	GATC	1 cut(s)	149
BspANI	GGCC	4 cut(s)	126, 168, 185, 207
BspCNI	CTCAG	1 cut(s)	141
BspFNI	CGCG	6 cut(s)	203, 267, 447, 458, 466, 483
BspMI	ACCTGC	1 cut(s)	328
BspPI	GGATC	1 cut(s)	157
BsrBI	CCGCTC	1 cut(s)	429
BsrI	ACTGG	2 cut(s)	141, 352
BssECI	CCNNGG	3 cut(s)	180, 186, 321
BssMI	GATC	1 cut(s)	149
BssNI	GRCGYC	3 cut(s)	27, 273, 453
BssT1I	CCWWGG	1 cut(s)	321
Bst2UI	CCWGG	2 cut(s)	147, 391
BstACI	GRCGYC	3 cut(s)	27, 273, 453
BstC8I	GCNNGC	5 cut(s)	17, 73, 205, 231, 347
BstDEI	CTNAG	1 cut(s)	128
BstDSI	CCRYGG	1 cut(s)	186
BstF5I	GGATG	3 cut(s)	42, 136, 334
BstFNI	CGCG	6 cut(s)	203, 267, 447, 458, 466, 483
BstHHI	GCGC	2 cut(s)	460, 468
BstKTI	GATC	1 cut(s)	152
BstMAI	GTCTC	1 cut(s)	34
BstMBI	GATC	1 cut(s)	149
BstMCI	CGRYCG	2 cut(s)	186, 265
BstMWI	GCNNNNNNNGC	4 cut(s)	68, 182, 309, 423
BstNI	CCWGG	2 cut(s)	147, 391
BstNSI	RCATGY	1 cut(s)	349
BstSCI	CCNGG	3 cut(s)	145, 180, 389
BstSLI	GKGCMC	1 cut(s)	320
BstUI	CGCG	6 cut(s)	203, 267, 447, 458, 466, 483
BstV1I	GCAGC	1 cut(s)	160
BstZI	CGGCCG	1 cut(s)	183
BsuRI	GGCC	4 cut(s)	126, 168, 185, 207
BtgI	CCRYGG	1 cut(s)	186
BtgZI	GCGATG	3 cut(s)	43, 52, 462
BtsCI	GGATG	3 cut(s)	42, 136, 334
BtsI	GCAGTG	1 cut(s)	376
BtsIMutI	CAGTG	2 cut(s)	359, 376
BveI	ACCTGC	1 cut(s)	328
Cac8I	GCNNGC	5 cut(s)	17, 73, 205, 231, 347
CfoI	GCGC	2 cut(s)	460, 468
Cfr13I	GGNCC	4 cut(s)	93, 124, 205, 340
CseI	GACGC	2 cut(s)	281, 442
Csp6I	GTAC	1 cut(s)	440
CviAII	CATG	2 cut(s)	346, 362
CviQI	GTAC	1 cut(s)	440
DdeI	CTNAG	1 cut(s)	128
DpnI	GATC	1 cut(s)	151
DpnII	GATC	1 cut(s)	149
DriI	GACNNNNNGTC	1 cut(s)	31
EaeI	YGGCCR	1 cut(s)	183
EagI	CGGCCG	1 cut(s)	183
Eam1105I	GACNNNNNGTC	1 cut(s)	31
EclXI	CGGCCG	1 cut(s)	183
Eco130I	CCWWGG	1 cut(s)	321
Eco147I	AGGCCT	1 cut(s)	168
Eco24I	GRGCYC	1 cut(s)	194
Eco47I	GGWCC	2 cut(s)	93, 340
Eco52I	CGGCCG	1 cut(s)	183
Eco88I	CYCGRG	1 cut(s)	193
EcoRII	CCWGG	2 cut(s)	145, 389
EcoT14I	CCWWGG	1 cut(s)	321
EcoT38I	GRGCYC	1 cut(s)	194
ErhI	CCWWGG	1 cut(s)	321
Esp3I	CGTCTC	1 cut(s)	34
FaeI	CATG	2 cut(s)	349, 365
FaiI	YATR	3 cut(s)	259, 347, 363
FalI	AAGNNNNNCTT	2 cut(s)	365, 397
FaqI	GGGAC	1 cut(s)	210
FatI	CATG	2 cut(s)	345, 361
FauI	CCCGC	2 cut(s)	196, 488
Fnu4HI	GCNGC	5 cut(s)	174, 177, 358, 427, 469
FokI	GGATG	3 cut(s)	29, 123, 341
FriOI	GRGCYC	1 cut(s)	194
Fsp4HI	GCNGC	5 cut(s)	174, 177, 358, 427, 469
GlaI	GCGC	2 cut(s)	459, 467
GluI	GCNGC	5 cut(s)	174, 177, 358, 427, 469
GsuI	CTGGAG	1 cut(s)	335
HaeIII	GGCC	4 cut(s)	126, 168, 185, 207
HapII	CCGG	2 cut(s)	91, 182
HgaI	GACGC	2 cut(s)	281, 442
HhaI	GCGC	2 cut(s)	460, 468
Hin1I	GRCGYC	3 cut(s)	27, 273, 453
Hin1II	CATG	2 cut(s)	349, 365
Hin6I	GCGC	2 cut(s)	458, 466
HinP1I	GCGC	2 cut(s)	458, 466
HinfI	GANTC	4 cut(s)	38, 198, 386, 474
HpaII	CCGG	2 cut(s)	91, 182
HphI	GGTGA	1 cut(s)	344
Hpy166II	GTNNAC	2 cut(s)	318, 442
Hpy188I	TCNGA	3 cut(s)	37, 154, 223
Hpy188III	TCNNGA	1 cut(s)	195
Hpy8I	GTNNAC	2 cut(s)	318, 442
Hpy99I	CGWCG	6 cut(s)	29, 164, 272, 275, 440, 458
HpyAV	CCTTC	1 cut(s)	158
HpyCH4IV	ACGT	1 cut(s)	27
HpyCH4V	TGCA	2 cut(s)	297, 318
HpyF10VI	GCNNNNNNNGC	4 cut(s)	68, 182, 309, 423
HpyF3I	CTNAG	1 cut(s)	128
HpySE526I	ACGT	1 cut(s)	27
Hsp92I	GRCGYC	3 cut(s)	27, 273, 453
Hsp92II	CATG	2 cut(s)	349, 365
HspAI	GCGC	2 cut(s)	458, 466
Kzo9I	GATC	1 cut(s)	149
LmnI	GCTCC	2 cut(s)	80, 354
Lsp1109I	GCAGC	1 cut(s)	160
MaeII	ACGT	1 cut(s)	27
MaeIII	GTNAC	1 cut(s)	6
MalI	GATC	1 cut(s)	151
MbiI	CCGCTC	1 cut(s)	429
MboI	GATC	1 cut(s)	149
MfeI	CAATTG	2 cut(s)	298, 412
MhlI	GDGCHC	2 cut(s)	194, 320
MluCI	AATT	2 cut(s)	298, 412
MlyI	GAGTC	4 cut(s)	32, 192, 380, 468
MmeI	TCCRAC	2 cut(s)	60, 246
MslI	CAYNNNNRTG	1 cut(s)	447
MspA1I	CMGCKG	1 cut(s)	510
MspI	CCGG	2 cut(s)	91, 182
MspR9I	CCNGG	3 cut(s)	147, 182, 391
MunI	CAATTG	2 cut(s)	298, 412
MvaI	CCWGG	2 cut(s)	147, 391
MvnI	CGCG	6 cut(s)	203, 267, 447, 458, 466, 483
MwoI	GCNNNNNNNGC	4 cut(s)	68, 182, 309, 423
NciI	CCSGG	1 cut(s)	182
NdeII	GATC	1 cut(s)	149
NlaIII	CATG	2 cut(s)	349, 365
NspI	RCATGY	1 cut(s)	349
PaeI	GCATGC	1 cut(s)	349
PceI	AGGCCT	1 cut(s)	168
PcsI	WCGNNNNNNNCGW	4 cut(s)	33, 207, 267, 444
PflMI	CCANNNNNTGG	1 cut(s)	121
PfoI	TCCNGGA	1 cut(s)	145
PkrI	GCNGC	5 cut(s)	175, 178, 359, 428, 470
PleI	GAGTC	4 cut(s)	32, 192, 380, 468
PpsI	GAGTC	4 cut(s)	32, 192, 380, 468
Psp6I	CCWGG	2 cut(s)	145, 389
PspGI	CCWGG	2 cut(s)	145, 389
PspPI	GGNCC	4 cut(s)	93, 124, 205, 340
PvuII	CAGCTG	1 cut(s)	510
RsaI	GTAC	1 cut(s)	441
RsaNI	GTAC	1 cut(s)	440
RseI	CAYNNNNRTG	1 cut(s)	447
SatI	GCNGC	5 cut(s)	174, 177, 358, 427, 469
Sau3AI	GATC	1 cut(s)	149
Sau96I	GGNCC	4 cut(s)	93, 124, 205, 340
SchI	GAGTC	4 cut(s)	32, 192, 380, 468
ScrFI	CCNGG	3 cut(s)	147, 182, 391
SduI	GDGCHC	2 cut(s)	194, 320
SinI	GGWCC	2 cut(s)	93, 340
SmiMI	CAYNNNNRTG	1 cut(s)	447
SphI	GCATGC	1 cut(s)	349
Sse9I	AATT	2 cut(s)	298, 412
SseBI	AGGCCT	1 cut(s)	168
StuI	AGGCCT	1 cut(s)	168
StyD4I	CCNGG	3 cut(s)	145, 180, 389
StyI	CCWWGG	1 cut(s)	321
TaiI	ACGT	1 cut(s)	30
TaqI	TCGA	2 cut(s)	384, 396
TasI	AATT	2 cut(s)	298, 412
TauI	GCSGC	4 cut(s)	179, 360, 429, 471
TscAI	CASTG	2 cut(s)	359, 383
TseI	GCWGC	1 cut(s)	173
TspRI	CASTG	2 cut(s)	359, 383
Van91I	CCANNNNNTGG	1 cut(s)	121
VneI	GTGCAC	1 cut(s)	316
VpaK11BI	GGWCC	2 cut(s)	93, 340
XceI	RCATGY	1 cut(s)	349
ZraI	GACGTC	1 cut(s)	28

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.