Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0015229

Physical Location & Seq

Genomic Coordinates Forward (+)

55576084 .. 55577147

Gene Structure 1064 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG332900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

ATGGGGTTACAGGGGCAGCTGAGCGACGTGTCGTCAGACTCCATCCCGCTCTTATTGGTGGCCGTCATCGCCACATTCATCGGCCACCTCCGCTCCTCCCTCTTCAGCTTTCTCCATTCCCTCGGCCTCTCCCGACTCGAGCGCCCTCCCCCGGACGACGGACTCCTTGCCTCCACAGTCGGCTCGGGGCTCGCCGGCCTCGTGGTCCTCGCCGAACAGCTCAACCTCAACCGCCTCTTCTCGTACCGCTACGACCACAGCCGCCACCGCGACGCCGCCGTTCCCGACTGCGTGGTCTGCTTGTCCAGCTTAAAAGACGGCGACCAGGTCCGCATGCTCCACTGCCGCCACGTCTTCCACAAGCACTGCTTCGACGGCTGGCTCGACCACCTCAACTTCAGTTGCCCTATCTGCCGCTCCCCGCTCGTCCAAGACGAGCGCGTCGCCCAAACGCGCCGCCGCGTCGGTGGTGACCTCCTCCACTGGTTCTCTCTCCGCGCCAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009628 GO:0009651 GO:0009787 GO:0009789 GO:0009966 GO:0009967 GO:0009987 GO:0010498 GO:0010646 GO:0010647 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0023051 GO:0023056 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0047484 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051603 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0080134 GO:0140096 GO:1901419 GO:1901421 GO:1901564 GO:1901565 GO:1901575 GO:1905957 GO:1905959

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

168

Amino Acids

18.74

Weight (kDa)

7.74

Isoelectric Point (pI)

49.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	96 - 139	7.4e-13	Ring finger domain
zf-RING_11	PF17123	96 - 123	1.2e-09	RING-like zinc finger
zf-RING_5	PF14634	96 - 139	8.5e-06	zinc-RING finger domain
zf-C3HC4_2	PF13923	97 - 138	5.2e-09	Zinc finger, C3HC4 type (RING finger)
zf-rbx1	PF12678	97 - 139	4.7e-07	RING-H2 zinc finger domain
zf-C3HC4	PF00097	97 - 138	5.2e-06	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0015229)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15100
fragaria_vesca	FvH4_4g26470
malus_domestica	MD13G1033600.v1.1 MD16G1035500.v1.1
prunus_persica	Prupe.1G319200_v2.0.a1
pyrus_communis	pycom13g02900 pycom16g03040
rosa_chinensis	RchiOBHm_Chr4g0434111
rosa_laevigata	RLG00000006699
rosa_multiflora	Rmu_sc0000352.1_g000035
rosa_roxburghii	Rroxscaffold_5G00375510
rosa_rugosa	Rorug04G0274200
rosa_samantha	Rh4BG336800 Rh4CG352300 Rh4DG332900
rosa_wichuraiana	Rw4G028550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	293, 440
AccBSI	CCGCTC	4 cut(s)	49, 93, 417, 424
AccII	CGCG	5 cut(s)	270, 441, 454, 462, 498
AcoI	YGGCCR	2 cut(s)	60, 82
AcuI	CTGAAG	2 cut(s)	88, 382
AcyI	GRCGYC	1 cut(s)	273
AfaI	GTAC	1 cut(s)	245
AfiI	CCNNNNNNNGG	2 cut(s)	151, 158
AflIII	ACRYGT	1 cut(s)	27
AhdI	GACNNNNNGTC	1 cut(s)	31
AjiI	CACGTC	2 cut(s)	28, 352
AjnI	CCWGG	1 cut(s)	324
AluBI	AGCT	4 cut(s)	19, 108, 220, 309
AluI	AGCT	4 cut(s)	19, 108, 220, 309
Ama87I	CYCGRG	2 cut(s)	137, 184
AoxI	GGCC	4 cut(s)	60, 82, 124, 196
ApeKI	GCWGC	1 cut(s)	16
AspLEI	GCGC	4 cut(s)	144, 441, 456, 500
AspS9I	GGNCC	2 cut(s)	205, 328
AsuC2I	CCSGG	1 cut(s)	152
AsuHPI	GGTGA	1 cut(s)	482
AvaI	CYCGRG	2 cut(s)	137, 184
AvaII	GGWCC	2 cut(s)	205, 328
BanII	GRGCYC	1 cut(s)	192
BauI	CACGAG	1 cut(s)	200
BbsI	GAAGAC	1 cut(s)	346
BbvI	GCAGC	1 cut(s)	28
BccI	CCATC	1 cut(s)	50
BceAI	ACGGC	4 cut(s)	47, 263, 334, 391
BciT130I	CCWGG	1 cut(s)	326
BcnI	CCSGG	1 cut(s)	152
BfoI	RGCGCY	1 cut(s)	145
BisI	GCNGC	7 cut(s)	17, 262, 276, 346, 415, 457, 460
BlpI	GCTNAGC	1 cut(s)	20
BlsI	GCNGC	7 cut(s)	18, 263, 277, 347, 416, 458, 461
Bme1390I	CCNGG	2 cut(s)	152, 326
Bme18I	GGWCC	2 cut(s)	205, 328
BmeRI	GACNNNNNGTC	1 cut(s)	31
BmeT110I	CYCGRG	2 cut(s)	137, 184
BmgBI	CACGTC	2 cut(s)	28, 352
BmgT120I	GGNCC	2 cut(s)	205, 328
BmrFI	CCNGG	2 cut(s)	152, 326
BpiI	GAAGAC	1 cut(s)	346
Bpu1102I	GCTNAGC	1 cut(s)	20
BpuMI	CCSGG	1 cut(s)	152
BsaHI	GRCGYC	1 cut(s)	273
BsaJI	CCNNGG	2 cut(s)	121, 150
BsaXI	ACNNNNNCTCC	2 cut(s)	77, 107
Bsc4I	CCNNNNNNNGG	2 cut(s)	151, 158
Bse118I	RCCGGY	1 cut(s)	194
Bse1I	ACTGG	1 cut(s)	488
BseBI	CCWGG	1 cut(s)	326
BseDI	CCNNGG	2 cut(s)	121, 150
BseGI	GGATG	1 cut(s)	42
BseLI	CCNNNNNNNGG	2 cut(s)	151, 158
BseMII	CTCAG	1 cut(s)	11
BseNI	ACTGG	1 cut(s)	488
BseRI	GAGGAG	2 cut(s)	85, 467
BseXI	GCAGC	1 cut(s)	28
Bsh1236I	CGCG	5 cut(s)	270, 441, 454, 462, 498
BshFI	GGCC	4 cut(s)	62, 84, 126, 198
BsiHKCI	CYCGRG	2 cut(s)	137, 184
BsiSI	CCGG	2 cut(s)	152, 195
BslI	CCNNNNNNNGG	2 cut(s)	151, 158
BsnI	GGCC	4 cut(s)	62, 84, 126, 198
BsoBI	CYCGRG	2 cut(s)	137, 184
Bsp1286I	GDGCHC	1 cut(s)	192
Bsp1720I	GCTNAGC	1 cut(s)	20
BspANI	GGCC	4 cut(s)	62, 84, 126, 198
BspCNI	CTCAG	1 cut(s)	12
BspFNI	CGCG	5 cut(s)	270, 441, 454, 462, 498
BsrBI	CCGCTC	4 cut(s)	49, 93, 417, 424
BsrFI	RCCGGY	1 cut(s)	194
BsrI	ACTGG	1 cut(s)	488
BssAI	RCCGGY	1 cut(s)	194
BssECI	CCNNGG	2 cut(s)	121, 150
BssNI	GRCGYC	1 cut(s)	273
BssSI	CACGAG	1 cut(s)	200
Bst2BI	CACGAG	1 cut(s)	200
Bst2UI	CCWGG	1 cut(s)	326
Bst4CI	ACNGT	1 cut(s)	178
Bst6I	CTCTTC	2 cut(s)	107, 242
BstACI	GRCGYC	1 cut(s)	273
BstC8I	GCNNGC	4 cut(s)	192, 196, 335, 380
BstDEI	CTNAG	1 cut(s)	20
BstEII	GGTNACC	1 cut(s)	470
BstF5I	GGATG	1 cut(s)	42
BstFNI	CGCG	5 cut(s)	270, 441, 454, 462, 498
BstH2I	RGCGCY	1 cut(s)	145
BstHHI	GCGC	4 cut(s)	144, 441, 456, 500
BstMWI	GCNNNNNNNGC	7 cut(s)	68, 90, 267, 297, 306, 375, 411
BstNI	CCWGG	1 cut(s)	326
BstNSI	RCATGY	1 cut(s)	337
BstPI	GGTNACC	1 cut(s)	470
BstSCI	CCNGG	2 cut(s)	150, 324
BstUI	CGCG	5 cut(s)	270, 441, 454, 462, 498
BstV1I	GCAGC	1 cut(s)	28
BstV2I	GAAGAC	1 cut(s)	346
BsuRI	GGCC	4 cut(s)	62, 84, 126, 198
BtgZI	GCGATG	1 cut(s)	52
BtrI	CACGTC	2 cut(s)	28, 352
BtsCI	GGATG	1 cut(s)	42
BtsI	GCAGTG	2 cut(s)	340, 364
BtsIMutI	CAGTG	3 cut(s)	340, 364, 481
Cac8I	GCNNGC	4 cut(s)	192, 196, 335, 380
CfoI	GCGC	4 cut(s)	144, 441, 456, 500
Cfr10I	RCCGGY	1 cut(s)	194
Cfr13I	GGNCC	2 cut(s)	205, 328
CseI	GACGC	3 cut(s)	281, 430, 451
CsiI	ACCWGGT	1 cut(s)	324
Csp6I	GTAC	1 cut(s)	244
CviAII	CATG	1 cut(s)	334
CviQI	GTAC	1 cut(s)	244
DdeI	CTNAG	1 cut(s)	20
DrdI	GACNNNNNNGTC	2 cut(s)	293, 440
DriI	GACNNNNNGTC	1 cut(s)	31
DseDI	GACNNNNNNGTC	2 cut(s)	293, 440
EaeI	YGGCCR	2 cut(s)	60, 82
Eam1104I	CTCTTC	2 cut(s)	107, 242
Eam1105I	GACNNNNNGTC	1 cut(s)	31
EarI	CTCTTC	2 cut(s)	107, 242
Eco24I	GRGCYC	1 cut(s)	192
Eco47I	GGWCC	2 cut(s)	205, 328
Eco57I	CTGAAG	2 cut(s)	88, 382
Eco88I	CYCGRG	2 cut(s)	137, 184
Eco91I	GGTNACC	1 cut(s)	470
EcoO65I	GGTNACC	1 cut(s)	470
EcoRII	CCWGG	1 cut(s)	324
EcoT38I	GRGCYC	1 cut(s)	192
FaeI	CATG	1 cut(s)	337
FaiI	YATR	1 cut(s)	335
FalI	AAGNNNNNCTT	2 cut(s)	353, 385
FatI	CATG	1 cut(s)	333
FauI	CCCGC	2 cut(s)	54, 429
Fnu4HI	GCNGC	7 cut(s)	17, 262, 276, 346, 415, 457, 460
FokI	GGATG	1 cut(s)	29
FriOI	GRGCYC	1 cut(s)	192
Fsp4HI	GCNGC	7 cut(s)	17, 262, 276, 346, 415, 457, 460
GlaI	GCGC	4 cut(s)	143, 440, 455, 499
GluI	GCNGC	7 cut(s)	17, 262, 276, 346, 415, 457, 460
HaeII	RGCGCY	1 cut(s)	145
HaeIII	GGCC	4 cut(s)	62, 84, 126, 198
HapII	CCGG	2 cut(s)	152, 195
HgaI	GACGC	3 cut(s)	281, 430, 451
HhaI	GCGC	4 cut(s)	144, 441, 456, 500
Hin1I	GRCGYC	1 cut(s)	273
Hin1II	CATG	1 cut(s)	337
Hin6I	GCGC	4 cut(s)	142, 439, 454, 498
HinP1I	GCGC	4 cut(s)	142, 439, 454, 498
HinfI	GANTC	3 cut(s)	38, 135, 162
HpaII	CCGG	2 cut(s)	152, 195
HphI	GGTGA	1 cut(s)	482
Hpy188I	TCNGA	1 cut(s)	37
Hpy188III	TCNNGA	2 cut(s)	132, 284
Hpy99I	CGWCG	6 cut(s)	29, 161, 275, 377, 446, 467
HpyCH4III	ACNGT	1 cut(s)	178
HpyCH4IV	ACGT	2 cut(s)	27, 351
HpyF10VI	GCNNNNNNNGC	7 cut(s)	68, 90, 267, 297, 306, 375, 411
HpyF3I	CTNAG	1 cut(s)	20
HpySE526I	ACGT	2 cut(s)	27, 351
Hsp92I	GRCGYC	1 cut(s)	273
Hsp92II	CATG	1 cut(s)	337
HspAI	GCGC	4 cut(s)	142, 439, 454, 498
KroI	GCCGGC	1 cut(s)	194
KroNI	GCCGGC	1 cut(s)	196
LmnI	GCTCC	3 cut(s)	98, 342, 422
LpnPI	CCDG	7 cut(s)	165, 208, 311, 319, 338, 364, 469
Lsp1109I	GCAGC	1 cut(s)	28
MabI	ACCWGGT	1 cut(s)	324
MaeII	ACGT	2 cut(s)	27, 351
MaeIII	GTNAC	2 cut(s)	6, 470
MbiI	CCGCTC	4 cut(s)	49, 93, 417, 424
MboII	GAAGA	3 cut(s)	94, 229, 346
MfeI	CAATTG	1 cut(s)	502
MhlI	GDGCHC	1 cut(s)	192
MluCI	AATT	1 cut(s)	502
MlyI	GAGTC	3 cut(s)	32, 129, 156
MroNI	GCCGGC	1 cut(s)	194
MseI	TTAA	1 cut(s)	311
MspA1I	CMGCKG	1 cut(s)	19
MspI	CCGG	2 cut(s)	152, 195
MspR9I	CCNGG	2 cut(s)	152, 326
MunI	CAATTG	1 cut(s)	502
MvaI	CCWGG	1 cut(s)	326
MvnI	CGCG	5 cut(s)	270, 441, 454, 462, 498
MwoI	GCNNNNNNNGC	7 cut(s)	68, 90, 267, 297, 306, 375, 411
NaeI	GCCGGC	1 cut(s)	196
NciI	CCSGG	1 cut(s)	152
NgoMIV	GCCGGC	1 cut(s)	194
NlaIII	CATG	1 cut(s)	337
NmeAIII	GCCGAG	1 cut(s)	102
NmuCI	GTSAC	1 cut(s)	470
NspI	RCATGY	1 cut(s)	337
PaeI	GCATGC	1 cut(s)	337
PaeR7I	CTCGAG	1 cut(s)	137
PcsI	WCGNNNNNNNCGW	3 cut(s)	198, 381, 432
PdiI	GCCGGC	1 cut(s)	196
PflFI	GACNNNGTC	1 cut(s)	326
PkrI	GCNGC	7 cut(s)	18, 263, 277, 347, 416, 458, 461
PleI	GAGTC	3 cut(s)	32, 129, 156
PpsI	GAGTC	3 cut(s)	32, 129, 156
Psp6I	CCWGG	1 cut(s)	324
PspEI	GGTNACC	1 cut(s)	470
PspGI	CCWGG	1 cut(s)	324
PspPI	GGNCC	2 cut(s)	205, 328
PspXI	VCTCGAGB	1 cut(s)	137
PsyI	GACNNNGTC	1 cut(s)	326
PvuII	CAGCTG	1 cut(s)	19
RsaI	GTAC	1 cut(s)	245
RsaNI	GTAC	1 cut(s)	244
SaqAI	TTAA	1 cut(s)	311
SatI	GCNGC	7 cut(s)	17, 262, 276, 346, 415, 457, 460
Sau96I	GGNCC	2 cut(s)	205, 328
SchI	GAGTC	3 cut(s)	32, 129, 156
ScrFI	CCNGG	2 cut(s)	152, 326
SduI	GDGCHC	1 cut(s)	192
SexAI	ACCWGGT	1 cut(s)	324
Sfr274I	CTCGAG	1 cut(s)	137
SinI	GGWCC	2 cut(s)	205, 328
SlaI	CTCGAG	1 cut(s)	137
SmlI	CTYRAG	1 cut(s)	137
SmoI	CTYRAG	1 cut(s)	137
SphI	GCATGC	1 cut(s)	337
Sse9I	AATT	1 cut(s)	502
StyD4I	CCNGG	2 cut(s)	150, 324
TaaI	ACNGT	1 cut(s)	178
TaiI	ACGT	2 cut(s)	30, 354
TaqI	TCGA	3 cut(s)	138, 372, 384
TasI	AATT	1 cut(s)	502
TauI	GCSGC	6 cut(s)	264, 278, 348, 417, 459, 462
Tru1I	TTAA	1 cut(s)	311
Tru9I	TTAA	1 cut(s)	311
TscAI	CASTG	3 cut(s)	347, 371, 488
TseFI	GTSAC	1 cut(s)	470
TseI	GCWGC	1 cut(s)	16
Tsp45I	GTSAC	1 cut(s)	470
TspDTI	ATGAA	1 cut(s)	67
TspGWI	ACGGA	1 cut(s)	174
TspRI	CASTG	3 cut(s)	347, 371, 488
Tth111I	GACNNNGTC	1 cut(s)	326
VpaK11BI	GGWCC	2 cut(s)	205, 328
XceI	RCATGY	1 cut(s)	337
XhoI	CTCGAG	1 cut(s)	137

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.