Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0015229

Physical Location & Seq

Genomic Coordinates Forward (+)

27869101 .. 27869613

Gene Structure 513 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g26470.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

ATGGGGTTACAGGGCCAGATGAGCGACTTGTCGTCCGACTCCATCCCAATCCTCCTCCTCGCCGTCGTCGCCACCTTCGTCAGCCACCTCCGCTCCTCCCTCTTCTCCTTCCTCCACTCCCTCGGCCTCTGCCGACGACCCGACCGCCGTGCTCCCCCCACAGACGACGGACTCCTCACCGCAGTCGGGTCAGGACTCGCCGGCCTCGCCATCCTCGCCGAGCAGCTCAACCTCAACAGCCTCTTCTCCTACCGCTACGACCACAGCCGCCACCGCGAAGGCGCCGTCCCCGACTGCATCGTCTGCTTGTCCGCCATGAAAGACGGCGACCGTGTCCGCATGCTCCACTGCCGCCACCTCTTCCACAAGCACTGCTTCGACGGGTGGCTCGACCAGCTCAACTTCAGTTGCCCTATCTGCCGCTCCCCGCTCGTACACGAGGAGCGCGTGAACCAGACGCGCCGCCGCGTGGGGGGTGACCTTGTCAACTGGTTCTCGCTGCGCACCAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009628 GO:0009651 GO:0009787 GO:0009789 GO:0009966 GO:0009967 GO:0009987 GO:0010498 GO:0010646 GO:0010647 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0023051 GO:0023056 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0047484 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051603 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0080134 GO:0140096 GO:1901419 GO:1901421 GO:1901564 GO:1901565 GO:1901575 GO:1905957 GO:1905959

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

171

Amino Acids

19.1

Weight (kDa)

8.57

Isoelectric Point (pI)

56.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	98 - 141	1.4e-12	Ring finger domain
zf-RING_11	PF17123	98 - 125	2.2e-08	RING-like zinc finger
zf-rbx1	PF12678	99 - 141	1.1e-07	RING-H2 zinc finger domain
zf-C3HC4_2	PF13923	99 - 140	1.1e-07	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4	PF00097	99 - 140	1.2e-06	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015229)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15100
fragaria_vesca	FvH4_4g26470
malus_domestica	MD13G1033600.v1.1 MD16G1035500.v1.1
prunus_persica	Prupe.1G319200_v2.0.a1
pyrus_communis	pycom13g02900 pycom16g03040
rosa_chinensis	RchiOBHm_Chr4g0434111
rosa_laevigata	RLG00000006699
rosa_multiflora	Rmu_sc0000352.1_g000035
rosa_roxburghii	Rroxscaffold_5G00375510
rosa_rugosa	Rorug04G0274200
rosa_samantha	Rh4BG336800 Rh4CG352300 Rh4DG332900
rosa_wichuraiana	Rw4G028550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	299
Acc16I	TGCGCA	1 cut(s)	503
AccB1I	GGYRCC	1 cut(s)	281
AccBSI	CCGCTC	3 cut(s)	93, 423, 430
AccII	CGCG	4 cut(s)	276, 447, 460, 468
AcuI	CTGAAG	1 cut(s)	388
AcyI	GRCGYC	1 cut(s)	282
AfaI	GTAC	1 cut(s)	435
AfiI	CCNNNNNNNGG	3 cut(s)	186, 469, 472
AhdI	GACNNNNNGTC	1 cut(s)	31
AluBI	AGCT	2 cut(s)	226, 397
AluI	AGCT	2 cut(s)	226, 397
Alw21I	GWGCWC	1 cut(s)	154
AoxI	GGCC	3 cut(s)	13, 124, 202
ApeKI	GCWGC	2 cut(s)	223, 499
ArsI	GACNNNNNNTTYG	2 cut(s)	270, 302
AspLEI	GCGC	4 cut(s)	284, 447, 462, 504
AspS9I	GGNCC	1 cut(s)	13
AsuHPI	GGTGA	2 cut(s)	169, 488
BanI	GGYRCC	1 cut(s)	281
BauI	CACGAG	1 cut(s)	437
Bbv12I	GWGCWC	1 cut(s)	154
BbvI	GCAGC	2 cut(s)	235, 486
BccI	CCATC	2 cut(s)	50, 218
BceAI	ACGGC	4 cut(s)	47, 132, 269, 340
BcgI	CGANNNNNNTGC	2 cut(s)	131, 165
BfoI	RGCGCY	1 cut(s)	285
BisI	GCNGC	7 cut(s)	224, 268, 352, 421, 463, 466, 500
BlsI	GCNGC	7 cut(s)	225, 269, 353, 422, 464, 467, 501
BmeRI	GACNNNNNGTC	1 cut(s)	31
BmgT120I	GGNCC	1 cut(s)	13
BmiI	GGNNCC	1 cut(s)	283
BmsI	GCATC	1 cut(s)	306
BsaHI	GRCGYC	1 cut(s)	282
BsaJI	CCNNGG	1 cut(s)	121
BsaXI	ACNNNNNCTCC	2 cut(s)	77, 107
Bsc4I	CCNNNNNNNGG	3 cut(s)	186, 469, 472
Bse118I	RCCGGY	1 cut(s)	200
Bse1I	ACTGG	1 cut(s)	494
BseDI	CCNNGG	1 cut(s)	121
BseGI	GGATG	2 cut(s)	42, 210
BseLI	CCNNNNNNNGG	3 cut(s)	186, 469, 472
BseNI	ACTGG	1 cut(s)	494
BseRI	GAGGAG	5 cut(s)	44, 47, 85, 164, 455
BseXI	GCAGC	2 cut(s)	235, 486
Bsh1236I	CGCG	4 cut(s)	276, 447, 460, 468
Bsh1285I	CGRYCG	2 cut(s)	145, 331
BshFI	GGCC	3 cut(s)	15, 126, 204
BshNI	GGYRCC	1 cut(s)	281
BsiEI	CGRYCG	2 cut(s)	145, 331
BsiHKAI	GWGCWC	1 cut(s)	154
BsiSI	CCGG	1 cut(s)	201
BslFI	GGGAC	1 cut(s)	272
BslI	CCNNNNNNNGG	3 cut(s)	186, 469, 472
BsmFI	GGGAC	1 cut(s)	272
BsnI	GGCC	3 cut(s)	15, 126, 204
Bsp1286I	GDGCHC	1 cut(s)	154
BspANI	GGCC	3 cut(s)	15, 126, 204
BspFNI	CGCG	4 cut(s)	276, 447, 460, 468
BspLI	GGNNCC	1 cut(s)	283
BspT107I	GGYRCC	1 cut(s)	281
BsrBI	CCGCTC	3 cut(s)	93, 423, 430
BsrFI	RCCGGY	1 cut(s)	200
BsrI	ACTGG	1 cut(s)	494
BssAI	RCCGGY	1 cut(s)	200
BssECI	CCNNGG	1 cut(s)	121
BssNI	GRCGYC	1 cut(s)	282
BssSI	CACGAG	1 cut(s)	437
Bst2BI	CACGAG	1 cut(s)	437
Bst4CI	ACNGT	1 cut(s)	332
Bst6I	CTCTTC	3 cut(s)	107, 248, 365
BstACI	GRCGYC	1 cut(s)	282
BstAPI	GCANNNNNTGC	1 cut(s)	303
BstC8I	GCNNGC	2 cut(s)	202, 341
BstEII	GGTNACC	1 cut(s)	476
BstF5I	GGATG	2 cut(s)	42, 210
BstFNI	CGCG	4 cut(s)	276, 447, 460, 468
BstH2I	RGCGCY	1 cut(s)	285
BstHHI	GCGC	4 cut(s)	284, 447, 462, 504
BstMCI	CGRYCG	2 cut(s)	145, 331
BstMWI	GCNNNNNNNGC	9 cut(s)	21, 68, 90, 206, 215, 273, 303, 394, 417
BstNSI	RCATGY	1 cut(s)	343
BstPI	GGTNACC	1 cut(s)	476
BstUI	CGCG	4 cut(s)	276, 447, 460, 468
BstV1I	GCAGC	2 cut(s)	235, 486
BsuRI	GGCC	3 cut(s)	15, 126, 204
BtsCI	GGATG	2 cut(s)	42, 210
BtsI	GCAGTG	2 cut(s)	346, 370
BtsIMutI	CAGTG	2 cut(s)	346, 370
Cac8I	GCNNGC	2 cut(s)	202, 341
CfoI	GCGC	4 cut(s)	284, 447, 462, 504
Cfr10I	RCCGGY	1 cut(s)	200
Cfr13I	GGNCC	1 cut(s)	13
CseI	GACGC	1 cut(s)	466
Csp6I	GTAC	1 cut(s)	434
CviAII	CATG	2 cut(s)	316, 340
CviJI	RGCY	9 cut(s)	15, 84, 126, 204, 226, 240, 267, 388, 397
CviKI_1	RGCY	9 cut(s)	15, 84, 126, 204, 226, 240, 267, 388, 397
CviQI	GTAC	1 cut(s)	434
DinI	GGCGCC	1 cut(s)	283
DrdI	GACNNNNNNGTC	1 cut(s)	299
DriI	GACNNNNNGTC	1 cut(s)	31
DseDI	GACNNNNNNGTC	1 cut(s)	299
Eam1104I	CTCTTC	3 cut(s)	107, 248, 365
Eam1105I	GACNNNNNGTC	1 cut(s)	31
EarI	CTCTTC	3 cut(s)	107, 248, 365
EciI	GGCGGA	1 cut(s)	301
Eco57I	CTGAAG	1 cut(s)	388
Eco91I	GGTNACC	1 cut(s)	476
EcoO65I	GGTNACC	1 cut(s)	476
EgeI	GGCGCC	1 cut(s)	283
EheI	GGCGCC	1 cut(s)	283
FaeI	CATG	2 cut(s)	319, 343
FaiI	YATR	2 cut(s)	317, 341
FalI	AAGNNNNNCTT	2 cut(s)	359, 391
FaqI	GGGAC	1 cut(s)	272
FatI	CATG	2 cut(s)	315, 339
FauI	CCCGC	1 cut(s)	435
Fnu4HI	GCNGC	7 cut(s)	224, 268, 352, 421, 463, 466, 500
FokI	GGATG	2 cut(s)	29, 197
Fsp4HI	GCNGC	7 cut(s)	224, 268, 352, 421, 463, 466, 500
FspI	TGCGCA	1 cut(s)	503
GlaI	GCGC	4 cut(s)	283, 446, 461, 503
GluI	GCNGC	7 cut(s)	224, 268, 352, 421, 463, 466, 500
HaeII	RGCGCY	1 cut(s)	285
HaeIII	GGCC	3 cut(s)	15, 126, 204
HapII	CCGG	1 cut(s)	201
HgaI	GACGC	1 cut(s)	466
HhaI	GCGC	4 cut(s)	284, 447, 462, 504
Hin1I	GRCGYC	1 cut(s)	282
Hin1II	CATG	2 cut(s)	319, 343
Hin6I	GCGC	4 cut(s)	282, 445, 460, 502
HinP1I	GCGC	4 cut(s)	282, 445, 460, 502
HincII	GTYRAC	1 cut(s)	487
HindII	GTYRAC	1 cut(s)	487
HinfI	GANTC	3 cut(s)	38, 171, 195
HpaII	CCGG	1 cut(s)	201
HphI	GGTGA	2 cut(s)	169, 488
Hpy166II	GTNNAC	3 cut(s)	436, 451, 487
Hpy188I	TCNGA	1 cut(s)	37
Hpy188III	TCNNGA	1 cut(s)	192
Hpy8I	GTNNAC	3 cut(s)	436, 451, 487
Hpy99I	CGWCG	5 cut(s)	68, 71, 138, 170, 383
HpyAV	CCTTC	3 cut(s)	85, 118, 272
HpyCH4III	ACNGT	1 cut(s)	332
HpyCH4V	TGCA	1 cut(s)	297
HpyF10VI	GCNNNNNNNGC	9 cut(s)	21, 68, 90, 206, 215, 273, 303, 394, 417
Hsp92I	GRCGYC	1 cut(s)	282
Hsp92II	CATG	2 cut(s)	319, 343
HspAI	GCGC	4 cut(s)	282, 445, 460, 502
KasI	GGCGCC	1 cut(s)	281
KroI	GCCGGC	1 cut(s)	200
KroNI	GCCGGC	1 cut(s)	202
LmnI	GCTCC	5 cut(s)	98, 157, 348, 428, 442
LpnPI	CCDG	6 cut(s)	29, 177, 214, 407, 467, 475
Lsp1109I	GCAGC	2 cut(s)	235, 486
LweI	GCATC	1 cut(s)	306
MaeIII	GTNAC	2 cut(s)	6, 476
MbiI	CCGCTC	3 cut(s)	93, 423, 430
MboII	GAAGA	3 cut(s)	94, 235, 352
MfeI	CAATTG	1 cut(s)	508
MhlI	GDGCHC	1 cut(s)	154
MluCI	AATT	1 cut(s)	508
Mly113I	GGCGCC	1 cut(s)	282
MlyI	GAGTC	3 cut(s)	32, 165, 189
MmeI	TCCRAC	1 cut(s)	60
MroNI	GCCGGC	1 cut(s)	200
MspI	CCGG	1 cut(s)	201
MunI	CAATTG	1 cut(s)	508
MvnI	CGCG	4 cut(s)	276, 447, 460, 468
MwoI	GCNNNNNNNGC	9 cut(s)	21, 68, 90, 206, 215, 273, 303, 394, 417
NaeI	GCCGGC	1 cut(s)	202
NarI	GGCGCC	1 cut(s)	282
NgoMIV	GCCGGC	1 cut(s)	200
NlaIII	CATG	2 cut(s)	319, 343
NlaIV	GGNNCC	1 cut(s)	283
NmeAIII	GCCGAG	2 cut(s)	102, 244
NmuCI	GTSAC	1 cut(s)	476
NsbI	TGCGCA	1 cut(s)	503
NspI	RCATGY	1 cut(s)	343
PaeI	GCATGC	1 cut(s)	343
PcsI	WCGNNNNNNNCGW	3 cut(s)	75, 387, 444
PdiI	GCCGGC	1 cut(s)	202
PflFI	GACNNNGTC	2 cut(s)	332, 482
PkrI	GCNGC	7 cut(s)	225, 269, 353, 422, 464, 467, 501
PleI	GAGTC	3 cut(s)	32, 165, 189
PluTI	GGCGCC	1 cut(s)	285
PpsI	GAGTC	3 cut(s)	32, 165, 189
PspEI	GGTNACC	1 cut(s)	476
PspN4I	GGNNCC	1 cut(s)	283
PspPI	GGNCC	1 cut(s)	13
PsyI	GACNNNGTC	2 cut(s)	332, 482
RsaI	GTAC	1 cut(s)	435
RsaNI	GTAC	1 cut(s)	434
SatI	GCNGC	7 cut(s)	224, 268, 352, 421, 463, 466, 500
Sau96I	GGNCC	1 cut(s)	13
SchI	GAGTC	3 cut(s)	32, 165, 189
SduI	GDGCHC	1 cut(s)	154
SetI	ASST	7 cut(s)	77, 90, 228, 234, 360, 399, 483
SfaNI	GCATC	1 cut(s)	306
SfoI	GGCGCC	1 cut(s)	283
SphI	GCATGC	1 cut(s)	343
Sse9I	AATT	1 cut(s)	508
SspDI	GGCGCC	1 cut(s)	281
TaaI	ACNGT	1 cut(s)	332
TaqI	TCGA	2 cut(s)	378, 390
TasI	AATT	1 cut(s)	508
TauI	GCSGC	5 cut(s)	270, 354, 423, 465, 468
TscAI	CASTG	2 cut(s)	353, 377
TseFI	GTSAC	1 cut(s)	476
TseI	GCWGC	2 cut(s)	223, 499
Tsp45I	GTSAC	1 cut(s)	476
TspDTI	ATGAA	1 cut(s)	332
TspGWI	ACGGA	1 cut(s)	183
TspRI	CASTG	2 cut(s)	353, 377
Tth111I	GACNNNGTC	2 cut(s)	332, 482
XceI	RCATGY	1 cut(s)	343

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.