Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0015229

Physical Location & Seq

Genomic Coordinates Forward (+)

44639496 .. 44640528

Gene Structure 1033 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0274200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

ATGGAGAAAACTATCGAGGTTTGTTACTACACTGCCTGGAATCATATGGATCGGTACAGTTGTCCGGACATCAAACCAGTAGCTAGGCTGTTCAAGGCCTTTGTTCTTGATGCCGACAACCTCATCCCTAAGATTGCTCCCCAAGCAGTTAAGAGTGCCGAGATTCTTGAAGGTGATGGAGGAGTTGGAACCATCAAGAAGATCAACCTCGGTGAAGGAAGTGAATACAGCTATGTGAGGCATCAGATTGACGGAATTGACAAAGATAACTTTGTGTATAAGTACAGCATGATCGAAGGAGATGCTATCTCAGACAAAATTGAGAAGATCTCCTACGAGACTAAGTTGGTGGCATCTTCCGATGGAGGCTCCGTCATCAAGAGCACCAGCAACTACCACACCAAGGGTGACGTCGAGATCAAGGAAGAGCATGTAAAGGCTGGCAAAGAAAGGGCTGCTGGTTTGTTCAAGATTATTGAGAGCCACCTTTTGACCAATCCTGATGCCTACAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009628 GO:0009651 GO:0009787 GO:0009789 GO:0009966 GO:0009967 GO:0009987 GO:0010498 GO:0010646 GO:0010647 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0023051 GO:0023056 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0047484 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051603 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0080134 GO:0140096 GO:1901419 GO:1901421 GO:1901564 GO:1901565 GO:1901575 GO:1905957 GO:1905959

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

171

Amino Acids

19.02

Weight (kDa)

5.56

Isoelectric Point (pI)

22.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Bet_v_1	PF00407	28 - 165	1.4e-22	Pathogenesis-related protein Bet v 1 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015229)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15100
fragaria_vesca	FvH4_4g26470
malus_domestica	MD13G1033600.v1.1 MD16G1035500.v1.1
prunus_persica	Prupe.1G319200_v2.0.a1
pyrus_communis	pycom13g02900 pycom16g03040
rosa_chinensis	RchiOBHm_Chr4g0434111
rosa_laevigata	RLG00000006699
rosa_multiflora	Rmu_sc0000352.1_g000035
rosa_roxburghii	Rroxscaffold_5G00375510
rosa_rugosa	Rorug04G0274200
rosa_samantha	Rh4BG336800 Rh4CG352300 Rh4DG332900
rosa_wichuraiana	Rw4G028550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	414
AccIII	TCCGGA	1 cut(s)	64
AclWI	GGATC	1 cut(s)	57
AcyI	GRCGYC	1 cut(s)	411
AfaI	GTAC	2 cut(s)	56, 284
AfiI	CCNNNNNNNGG	1 cut(s)	403
AgsI	TTSAA	3 cut(s)	94, 170, 469
AjnI	CCWGG	1 cut(s)	35
AluBI	AGCT	2 cut(s)	83, 231
AluI	AGCT	2 cut(s)	83, 231
Alw21I	GWGCWC	1 cut(s)	386
Alw26I	GTCTC	1 cut(s)	332
AlwI	GGATC	1 cut(s)	57
Aor13HI	TCCGGA	1 cut(s)	64
AoxI	GGCC	1 cut(s)	96
ApeKI	GCWGC	1 cut(s)	455
AsuHPI	GGTGA	3 cut(s)	185, 224, 419
BaeI	ACNNNNGTAYC	2 cut(s)	46, 79
BarI	GAAGNNNNNNTAC	2 cut(s)	317, 349
Bbv12I	GWGCWC	1 cut(s)	386
BbvI	GCAGC	1 cut(s)	442
BccI	CCATC	3 cut(s)	170, 200, 356
BcgI	CGANNNNNNTGC	2 cut(s)	284, 318
BciT130I	CCWGG	1 cut(s)	37
BcoDI	GTCTC	1 cut(s)	332
BfaI	CTAG	1 cut(s)	84
BglII	AGATCT	1 cut(s)	327
BisI	GCNGC	1 cut(s)	456
BlsI	GCNGC	1 cut(s)	457
Bme1390I	CCNGG	1 cut(s)	37
BmiI	GGNNCC	2 cut(s)	190, 370
BmrFI	CCNGG	1 cut(s)	37
BmsI	GCATC	5 cut(s)	100, 250, 292, 362, 493
BplI	GAGNNNNNCTC	2 cut(s)	314, 346
BsaHI	GRCGYC	1 cut(s)	411
BsaJI	CCNNGG	2 cut(s)	208, 402
BsaWI	WCCGGW	1 cut(s)	64
BsaXI	ACNNNNNCTCC	2 cut(s)	357, 387
Bsc4I	CCNNNNNNNGG	1 cut(s)	403
Bse1I	ACTGG	1 cut(s)	77
BseAI	TCCGGA	1 cut(s)	64
BseBI	CCWGG	1 cut(s)	37
BseDI	CCNNGG	2 cut(s)	208, 402
BseGI	GGATG	1 cut(s)	123
BseLI	CCNNNNNNNGG	1 cut(s)	403
BseMII	CTCAG	1 cut(s)	324
BseNI	ACTGG	1 cut(s)	77
BseRI	GAGGAG	1 cut(s)	195
BseXI	GCAGC	1 cut(s)	442
BshFI	GGCC	1 cut(s)	98
BsiHKAI	GWGCWC	1 cut(s)	386
BsiSI	CCGG	1 cut(s)	65
BslI	CCNNNNNNNGG	1 cut(s)	403
BsmAI	GTCTC	1 cut(s)	332
BsnI	GGCC	1 cut(s)	98
Bsp1286I	GDGCHC	1 cut(s)	386
Bsp13I	TCCGGA	1 cut(s)	64
Bsp143I	GATC	5 cut(s)	49, 201, 291, 327, 417
BspANI	GGCC	1 cut(s)	98
BspCNI	CTCAG	1 cut(s)	323
BspEI	TCCGGA	1 cut(s)	64
BspLI	GGNNCC	2 cut(s)	190, 370
BspPI	GGATC	1 cut(s)	57
BspQI	GCTCTTC	1 cut(s)	420
BsrI	ACTGG	1 cut(s)	77
BssECI	CCNNGG	2 cut(s)	208, 402
BssMI	GATC	5 cut(s)	49, 201, 291, 327, 417
BssNI	GRCGYC	1 cut(s)	411
BssT1I	CCWWGG	1 cut(s)	402
Bst2UI	CCWGG	1 cut(s)	37
Bst4CI	ACNGT	1 cut(s)	59
Bst6I	CTCTTC	1 cut(s)	420
BstACI	GRCGYC	1 cut(s)	411
BstC8I	GCNNGC	1 cut(s)	442
BstDEI	CTNAG	3 cut(s)	129, 310, 342
BstF5I	GGATG	1 cut(s)	123
BstKTI	GATC	5 cut(s)	52, 204, 294, 330, 420
BstMAI	GTCTC	1 cut(s)	332
BstMBI	GATC	5 cut(s)	49, 201, 291, 327, 417
BstMWI	GCNNNNNNNGC	1 cut(s)	143
BstNI	CCWGG	1 cut(s)	37
BstNSI	RCATGY	1 cut(s)	434
BstSCI	CCNGG	1 cut(s)	35
BstV1I	GCAGC	1 cut(s)	442
BstX2I	RGATCY	1 cut(s)	327
BstYI	RGATCY	1 cut(s)	327
BsuRI	GGCC	1 cut(s)	98
BtsCI	GGATG	1 cut(s)	123
BtsI	GCAGTG	1 cut(s)	30
BtsIMutI	CAGTG	1 cut(s)	30
Cac8I	GCNNGC	1 cut(s)	442
Csp6I	GTAC	2 cut(s)	55, 283
CviAII	CATG	2 cut(s)	289, 431
CviJI	RGCY	8 cut(s)	83, 88, 98, 231, 369, 440, 455, 483
CviKI_1	RGCY	8 cut(s)	83, 88, 98, 231, 369, 440, 455, 483
CviQI	GTAC	2 cut(s)	55, 283
DdeI	CTNAG	3 cut(s)	129, 310, 342
DpnI	GATC	5 cut(s)	51, 203, 293, 329, 419
DpnII	GATC	5 cut(s)	49, 201, 291, 327, 417
Eam1104I	CTCTTC	1 cut(s)	420
EarI	CTCTTC	1 cut(s)	420
Eco130I	CCWWGG	1 cut(s)	402
Eco147I	AGGCCT	1 cut(s)	98
EcoRII	CCWGG	1 cut(s)	35
EcoT14I	CCWWGG	1 cut(s)	402
ErhI	CCWWGG	1 cut(s)	402
FaeI	CATG	2 cut(s)	292, 434
FaiI	YATR	6 cut(s)	45, 47, 234, 279, 290, 432
FatI	CATG	2 cut(s)	288, 430
FauNDI	CATATG	1 cut(s)	45
Fnu4HI	GCNGC	1 cut(s)	456
FokI	GGATG	1 cut(s)	110
Fsp4HI	GCNGC	1 cut(s)	456
FspBI	CTAG	1 cut(s)	84
GluI	GCNGC	1 cut(s)	456
HaeIII	GGCC	1 cut(s)	98
HapII	CCGG	1 cut(s)	65
Hin1I	GRCGYC	1 cut(s)	411
Hin1II	CATG	2 cut(s)	292, 434
HinfI	GANTC	2 cut(s)	40, 163
HpaII	CCGG	1 cut(s)	65
HphI	GGTGA	3 cut(s)	185, 224, 419
Hpy188I	TCNGA	3 cut(s)	246, 313, 361
Hpy188III	TCNNGA	8 cut(s)	65, 107, 167, 196, 379, 415, 469, 500
Hpy99I	CGWCG	1 cut(s)	416
HpyAV	CCTTC	3 cut(s)	164, 209, 290
HpyCH4III	ACNGT	1 cut(s)	59
HpyCH4IV	ACGT	1 cut(s)	411
HpyF10VI	GCNNNNNNNGC	1 cut(s)	143
HpyF3I	CTNAG	3 cut(s)	129, 310, 342
HpySE526I	ACGT	1 cut(s)	411
Hsp92I	GRCGYC	1 cut(s)	411
Hsp92II	CATG	2 cut(s)	292, 434
Kpn2I	TCCGGA	1 cut(s)	64
Kzo9I	GATC	5 cut(s)	49, 201, 291, 327, 417
LguI	GCTCTTC	1 cut(s)	420
LmnI	GCTCC	2 cut(s)	142, 374
LpnPI	CCDG	7 cut(s)	22, 49, 78, 90, 400, 426, 444
Lsp1109I	GCAGC	1 cut(s)	442
LweI	GCATC	5 cut(s)	100, 250, 292, 362, 493
MaeI	CTAG	1 cut(s)	84
MaeII	ACGT	1 cut(s)	411
MaeIII	GTNAC	2 cut(s)	23, 407
MalI	GATC	5 cut(s)	51, 203, 293, 329, 419
MboI	GATC	5 cut(s)	49, 201, 291, 327, 417
MboII	GAAGA	4 cut(s)	211, 337, 348, 437
MflI	RGATCY	1 cut(s)	327
MhlI	GDGCHC	1 cut(s)	386
MluCI	AATT	2 cut(s)	255, 318
MmeI	TCCRAC	1 cut(s)	166
MnlI	CCTC	6 cut(s)	10, 131, 173, 218, 231, 359
MroI	TCCGGA	1 cut(s)	64
MseI	TTAA	1 cut(s)	150
MspI	CCGG	1 cut(s)	65
MspR9I	CCNGG	1 cut(s)	37
MvaI	CCWGG	1 cut(s)	37
MwoI	GCNNNNNNNGC	1 cut(s)	143
NdeI	CATATG	1 cut(s)	45
NdeII	GATC	5 cut(s)	49, 201, 291, 327, 417
NlaIII	CATG	2 cut(s)	292, 434
NlaIV	GGNNCC	2 cut(s)	190, 370
NmeAIII	GCCGAG	1 cut(s)	184
NmuCI	GTSAC	1 cut(s)	407
NspI	RCATGY	1 cut(s)	434
PceI	AGGCCT	1 cut(s)	98
PciSI	GCTCTTC	1 cut(s)	420
PfeI	GAWTC	2 cut(s)	40, 163
PkrI	GCNGC	1 cut(s)	457
Psp6I	CCWGG	1 cut(s)	35
PspGI	CCWGG	1 cut(s)	35
PspN4I	GGNNCC	2 cut(s)	190, 370
PsuI	RGATCY	1 cut(s)	327
RsaI	GTAC	2 cut(s)	56, 284
RsaNI	GTAC	2 cut(s)	55, 283
SapI	GCTCTTC	1 cut(s)	420
SaqAI	TTAA	1 cut(s)	150
SatI	GCNGC	1 cut(s)	456
Sau3AI	GATC	5 cut(s)	49, 201, 291, 327, 417
ScrFI	CCNGG	1 cut(s)	37
SduI	GDGCHC	1 cut(s)	386
SetI	ASST	8 cut(s)	21, 85, 123, 175, 210, 233, 414, 489
SfaNI	GCATC	5 cut(s)	100, 250, 292, 362, 493
Sse9I	AATT	2 cut(s)	255, 318
SseBI	AGGCCT	1 cut(s)	98
SspMI	CTAG	1 cut(s)	84
StuI	AGGCCT	1 cut(s)	98
StyD4I	CCNGG	1 cut(s)	35
StyI	CCWWGG	1 cut(s)	402
TaaI	ACNGT	1 cut(s)	59
TaiI	ACGT	1 cut(s)	414
TaqI	TCGA	3 cut(s)	15, 294, 414
TasI	AATT	2 cut(s)	255, 318
TatI	WGTACW	1 cut(s)	282
TfiI	GAWTC	2 cut(s)	40, 163
Tru1I	TTAA	1 cut(s)	150
Tru9I	TTAA	1 cut(s)	150
TscAI	CASTG	1 cut(s)	37
TseFI	GTSAC	1 cut(s)	407
TseI	GCWGC	1 cut(s)	455
Tsp45I	GTSAC	1 cut(s)	407
TspGWI	ACGGA	2 cut(s)	267, 361
TspRI	CASTG	1 cut(s)	37
XceI	RCATGY	1 cut(s)	434
XspI	CTAG	1 cut(s)	84
ZraI	GACGTC	1 cut(s)	412

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.