Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0015229

Physical Location & Seq

Genomic Coordinates Reverse (-)

30645763 .. 30647556

Gene Structure 1794 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G319200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

ATGGGGTTACAGAACCAGCTGAACGACGTGTCGTCGGACTCAATCCCACTCTTACTCATCGCACTCATCGCCAGATTCATCAACCACCTCCGCTCCTCCCTCTTCCACCTCCTCCATTTCCTGGGCCTCAGCAACCCAGGCCCAGGCCCAGACTACGACGATGGCCTTCTCGCGGGCTCGGGCCTCGCGGGCCTCGCCGTCCTTGCCGACCAGCTCGCCCTCAACCGCCACTTGTCCTTCCAATATGATCGCAACCGCCATGACCAACAGAACGATGCCGTCGCGAGGTCACGGGATTGCGATTGCGTGGTGTGCTTGTCCACCTTAAGGGATGGGGACCAGGTCCGTATGCTCAACTGCCGCCACTTGTTCCACAAGAGCTGCTTCGACGGATGGCTCGACCACCTCAACTTCAATTGCCCTATTTGCCGCTCTCCCCTCGTCCACCGTGACCTCGTCGCCCACAGGGGCCGCCGCCTCGCCGCCGACCTCCTCCACTGGTTTTCTCTCCGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009628 GO:0009651 GO:0009787 GO:0009789 GO:0009966 GO:0009967 GO:0009987 GO:0010498 GO:0010646 GO:0010647 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0023051 GO:0023056 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0047484 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051603 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0080134 GO:0140096 GO:1901419 GO:1901421 GO:1901564 GO:1901565 GO:1901575 GO:1905957 GO:1905959

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

172

Amino Acids

19.28

Weight (kDa)

7.16

Isoelectric Point (pI)

43.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015229)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15100
fragaria_vesca	FvH4_4g26470
malus_domestica	MD13G1033600.v1.1 MD16G1035500.v1.1
prunus_persica	Prupe.1G319200_v2.0.a1
pyrus_communis	pycom13g02900 pycom16g03040
rosa_chinensis	RchiOBHm_Chr4g0434111
rosa_laevigata	RLG00000006699
rosa_multiflora	Rmu_sc0000352.1_g000035
rosa_roxburghii	Rroxscaffold_5G00375510
rosa_rugosa	Rorug04G0274200
rosa_samantha	Rh4BG336800 Rh4CG352300 Rh4DG332900
rosa_wichuraiana	Rw4G028550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	121
AccBSI	CCGCTC	2 cut(s)	93, 432
AccII	CGCG	3 cut(s)	173, 188, 284
AfiI	CCNNNNNNNGG	5 cut(s)	121, 143, 172, 285, 327
AflII	CTTAAG	1 cut(s)	325
AflIII	ACRYGT	1 cut(s)	27
AgsI	TTSAA	1 cut(s)	415
AhdI	GACNNNNNGTC	1 cut(s)	31
AjiI	CACGTC	1 cut(s)	28
AjnI	CCWGG	4 cut(s)	120, 136, 142, 339
AluBI	AGCT	3 cut(s)	19, 214, 381
AluI	AGCT	3 cut(s)	19, 214, 381
Ama87I	CYCGRG	1 cut(s)	178
AoxI	GGCC	7 cut(s)	124, 139, 145, 163, 181, 190, 469
ApeKI	GCWGC	1 cut(s)	381
AspS9I	GGNCC	8 cut(s)	124, 140, 146, 181, 190, 337, 343, 469
AvaI	CYCGRG	1 cut(s)	178
AvaII	GGWCC	2 cut(s)	337, 343
BanII	GRGCYC	1 cut(s)	179
BbvCI	CCTCAGC	1 cut(s)	128
BbvI	GCAGC	1 cut(s)	368
BccI	CCATC	3 cut(s)	155, 326, 387
BceAI	ACGGC	2 cut(s)	182, 263
BciT130I	CCWGG	4 cut(s)	122, 138, 144, 341
BfrI	CTTAAG	1 cut(s)	325
BglI	GCCNNNNNGGC	1 cut(s)	189
BisI	GCNGC	6 cut(s)	361, 382, 430, 472, 475, 483
BlsI	GCNGC	6 cut(s)	362, 383, 431, 473, 476, 484
Bme1390I	CCNGG	4 cut(s)	122, 138, 144, 341
Bme18I	GGWCC	2 cut(s)	337, 343
BmeRI	GACNNNNNGTC	1 cut(s)	31
BmeT110I	CYCGRG	1 cut(s)	178
BmgBI	CACGTC	1 cut(s)	28
BmgT120I	GGNCC	8 cut(s)	124, 140, 146, 181, 190, 337, 343, 469
BmiI	GGNNCC	2 cut(s)	338, 470
BmrFI	CCNGG	4 cut(s)	122, 138, 144, 341
BmsI	GCATC	1 cut(s)	265
Bpu10I	CCTNAGC	1 cut(s)	128
BsaJI	CCNNGG	3 cut(s)	121, 136, 142
BsaXI	ACNNNNNCTCC	2 cut(s)	77, 107
Bsc4I	CCNNNNNNNGG	5 cut(s)	121, 143, 172, 285, 327
Bse1I	ACTGG	1 cut(s)	503
BseBI	CCWGG	4 cut(s)	122, 138, 144, 341
BseDI	CCNNGG	3 cut(s)	121, 136, 142
BseGI	GGATG	2 cut(s)	337, 398
BseLI	CCNNNNNNNGG	5 cut(s)	121, 143, 172, 285, 327
BseMII	CTCAG	1 cut(s)	142
BseNI	ACTGG	1 cut(s)	503
BseRI	GAGGAG	3 cut(s)	85, 101, 482
BseXI	GCAGC	1 cut(s)	368
Bsh1236I	CGCG	3 cut(s)	173, 188, 284
BshFI	GGCC	7 cut(s)	126, 141, 147, 165, 183, 192, 471
BsiHKCI	CYCGRG	1 cut(s)	178
BslFI	GGGAC	1 cut(s)	350
BslI	CCNNNNNNNGG	5 cut(s)	121, 143, 172, 285, 327
BsmFI	GGGAC	1 cut(s)	350
BsnI	GGCC	7 cut(s)	126, 141, 147, 165, 183, 192, 471
BsoBI	CYCGRG	1 cut(s)	178
Bsp1286I	GDGCHC	1 cut(s)	179
Bsp143I	GATC	1 cut(s)	247
Bsp68I	TCGCGA	1 cut(s)	284
BspANI	GGCC	7 cut(s)	126, 141, 147, 165, 183, 192, 471
BspCNI	CTCAG	1 cut(s)	141
BspFNI	CGCG	3 cut(s)	173, 188, 284
BspLI	GGNNCC	2 cut(s)	338, 470
BspTI	CTTAAG	1 cut(s)	325
BsrBI	CCGCTC	2 cut(s)	93, 432
BsrI	ACTGG	1 cut(s)	503
BssECI	CCNNGG	3 cut(s)	121, 136, 142
BssMI	GATC	1 cut(s)	247
Bst2UI	CCWGG	4 cut(s)	122, 138, 144, 341
Bst4CI	ACNGT	1 cut(s)	449
Bst6I	CTCTTC	1 cut(s)	107
BstAFI	CTTAAG	1 cut(s)	325
BstC8I	GCNNGC	3 cut(s)	175, 190, 216
BstDEI	CTNAG	1 cut(s)	128
BstF5I	GGATG	2 cut(s)	337, 398
BstFNI	CGCG	3 cut(s)	173, 188, 284
BstKTI	GATC	1 cut(s)	250
BstMBI	GATC	1 cut(s)	247
BstMWI	GCNNNNNNNGC	7 cut(s)	68, 138, 189, 194, 203, 312, 426
BstNI	CCWGG	4 cut(s)	122, 138, 144, 341
BstSCI	CCNGG	4 cut(s)	120, 136, 142, 339
BstUI	CGCG	3 cut(s)	173, 188, 284
BstV1I	GCAGC	1 cut(s)	368
BsuRI	GGCC	7 cut(s)	126, 141, 147, 165, 183, 192, 471
BtgZI	GCGATG	2 cut(s)	43, 52
BtrI	CACGTC	1 cut(s)	28
BtsCI	GGATG	2 cut(s)	337, 398
BtsIMutI	CAGTG	1 cut(s)	496
BtuMI	TCGCGA	1 cut(s)	284
Cac8I	GCNNGC	3 cut(s)	175, 190, 216
Cfr13I	GGNCC	8 cut(s)	124, 140, 146, 181, 190, 337, 343, 469
CsiI	ACCWGGT	1 cut(s)	339
CviAII	CATG	1 cut(s)	260
DdeI	CTNAG	1 cut(s)	128
DpnI	GATC	1 cut(s)	249
DpnII	GATC	1 cut(s)	247
DriI	GACNNNNNGTC	1 cut(s)	31
Eam1104I	CTCTTC	1 cut(s)	107
Eam1105I	GACNNNNNGTC	1 cut(s)	31
EarI	CTCTTC	1 cut(s)	107
Eco24I	GRGCYC	1 cut(s)	179
Eco47I	GGWCC	2 cut(s)	337, 343
Eco88I	CYCGRG	1 cut(s)	178
EcoRII	CCWGG	4 cut(s)	120, 136, 142, 339
EcoT38I	GRGCYC	1 cut(s)	179
FaeI	CATG	1 cut(s)	263
FaiI	YATR	3 cut(s)	246, 261, 350
FalI	AAGNNNNNCTT	2 cut(s)	368, 400
FaqI	GGGAC	1 cut(s)	350
FatI	CATG	1 cut(s)	259
FauI	CCCGC	2 cut(s)	166, 181
Fnu4HI	GCNGC	6 cut(s)	361, 382, 430, 472, 475, 483
FokI	GGATG	2 cut(s)	344, 405
FriOI	GRGCYC	1 cut(s)	179
Fsp4HI	GCNGC	6 cut(s)	361, 382, 430, 472, 475, 483
GluI	GCNGC	6 cut(s)	361, 382, 430, 472, 475, 483
HaeIII	GGCC	7 cut(s)	126, 141, 147, 165, 183, 192, 471
Hin1II	CATG	1 cut(s)	263
HinfI	GANTC	2 cut(s)	38, 75
Hpy166II	GTNNAC	2 cut(s)	321, 445
Hpy188I	TCNGA	1 cut(s)	37
Hpy188III	TCNNGA	1 cut(s)	283
Hpy8I	GTNNAC	2 cut(s)	321, 445
Hpy99I	CGWCG	6 cut(s)	29, 37, 161, 284, 392, 461
HpyAV	CCTTC	2 cut(s)	176, 247
HpyCH4III	ACNGT	1 cut(s)	449
HpyCH4IV	ACGT	1 cut(s)	27
HpyF10VI	GCNNNNNNNGC	7 cut(s)	68, 138, 189, 194, 203, 312, 426
HpyF3I	CTNAG	1 cut(s)	128
HpySE526I	ACGT	1 cut(s)	27
Hsp92II	CATG	1 cut(s)	263
Kzo9I	GATC	1 cut(s)	247
LmnI	GCTCC	1 cut(s)	98
Lsp1109I	GCAGC	1 cut(s)	368
LweI	GCATC	1 cut(s)	265
MabI	ACCWGGT	1 cut(s)	339
MaeII	ACGT	1 cut(s)	27
MaeIII	GTNAC	3 cut(s)	6, 288, 449
MalI	GATC	1 cut(s)	249
MbiI	CCGCTC	2 cut(s)	93, 432
MboI	GATC	1 cut(s)	247
MboII	GAAGA	1 cut(s)	94
MfeI	CAATTG	1 cut(s)	415
MhlI	GDGCHC	1 cut(s)	179
MluCI	AATT	1 cut(s)	415
MlyI	GAGTC	1 cut(s)	32
MmeI	TCCRAC	1 cut(s)	15
MseI	TTAA	1 cut(s)	326
MspA1I	CMGCKG	2 cut(s)	19, 513
MspCI	CTTAAG	1 cut(s)	325
MspR9I	CCNGG	4 cut(s)	122, 138, 144, 341
MunI	CAATTG	1 cut(s)	415
MvaI	CCWGG	4 cut(s)	122, 138, 144, 341
MvnI	CGCG	3 cut(s)	173, 188, 284
MwoI	GCNNNNNNNGC	7 cut(s)	68, 138, 189, 194, 203, 312, 426
NdeII	GATC	1 cut(s)	247
NlaIII	CATG	1 cut(s)	263
NlaIV	GGNNCC	2 cut(s)	338, 470
NmuCI	GTSAC	2 cut(s)	288, 449
NruI	TCGCGA	1 cut(s)	284
PcsI	WCGNNNNNNNCGW	1 cut(s)	396
PfeI	GAWTC	1 cut(s)	75
PflFI	GACNNNGTC	2 cut(s)	341, 455
PflMI	CCANNNNNTGG	1 cut(s)	121
PkrI	GCNGC	6 cut(s)	362, 383, 431, 473, 476, 484
PleI	GAGTC	1 cut(s)	32
PpsI	GAGTC	1 cut(s)	32
Psp6I	CCWGG	4 cut(s)	120, 136, 142, 339
PspGI	CCWGG	4 cut(s)	120, 136, 142, 339
PspN4I	GGNNCC	2 cut(s)	338, 470
PspPI	GGNCC	8 cut(s)	124, 140, 146, 181, 190, 337, 343, 469
PsyI	GACNNNGTC	2 cut(s)	341, 455
PvuII	CAGCTG	1 cut(s)	19
RruI	TCGCGA	1 cut(s)	284
SaqAI	TTAA	1 cut(s)	326
SatI	GCNGC	6 cut(s)	361, 382, 430, 472, 475, 483
Sau3AI	GATC	1 cut(s)	247
Sau96I	GGNCC	8 cut(s)	124, 140, 146, 181, 190, 337, 343, 469
SchI	GAGTC	1 cut(s)	32
ScrFI	CCNGG	4 cut(s)	122, 138, 144, 341
SduI	GDGCHC	1 cut(s)	179
SexAI	ACCWGGT	1 cut(s)	339
SfaNI	GCATC	1 cut(s)	265
SfiI	GGCCNNNNNGGCC	1 cut(s)	189
SinI	GGWCC	2 cut(s)	337, 343
SmlI	CTYRAG	1 cut(s)	325
SmoI	CTYRAG	1 cut(s)	325
Sse9I	AATT	1 cut(s)	415
StyD4I	CCNGG	4 cut(s)	120, 136, 142, 339
TaaI	ACNGT	1 cut(s)	449
TaiI	ACGT	1 cut(s)	30
TaqI	TCGA	2 cut(s)	387, 399
TasI	AATT	1 cut(s)	415
TauI	GCSGC	5 cut(s)	363, 432, 474, 477, 485
TfiI	GAWTC	1 cut(s)	75
Tru1I	TTAA	1 cut(s)	326
Tru9I	TTAA	1 cut(s)	326
TscAI	CASTG	1 cut(s)	503
TseFI	GTSAC	2 cut(s)	288, 449
TseI	GCWGC	1 cut(s)	381
Tsp45I	GTSAC	2 cut(s)	288, 449
TspDTI	ATGAA	1 cut(s)	67
TspGWI	ACGGA	2 cut(s)	335, 405
TspRI	CASTG	1 cut(s)	503
Tth111I	GACNNNGTC	2 cut(s)	341, 455
Van91I	CCANNNNNTGG	1 cut(s)	121
Vha464I	CTTAAG	1 cut(s)	325
VpaK11BI	GGWCC	2 cut(s)	337, 343

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.