Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0015229

Physical Location & Seq

Genomic Coordinates Forward (+)

2365099 .. 2365611

Gene Structure 513 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1033600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

ATGGGGTTACAAAGCCAGCTCAACGACGTCTCTTCCGACTCCATCCCGCTCTTACTCATCGCACTCATCGCCAGCTCCATCAACCACCTCCGCTCCTCCCTCCTCGCCCTCCTCCATTTTCTGGGCCTCAGCCCCCATCCCAATCCTGGCTCAGACTACGACGAAGGCCTTGCTGCCGGCCCGGCCGTGGGCTCGGGACTCGCGGGTCTCGTTATCTTGTCCGACCAGCTCGCCCTCAACCGTCACTTATCCTATCCATACGACCGCGACGACGCCGTTGCCACCGCACGGGATTGCAATTGCGTGGTGTGCTTGTGCACCTTGGGGGATGGTGAGCAGGTCCGCATGCTCCAGTGCCGCCATGTGTTCCACAAGCACTGCTTCGACTCCTGGCTCGACCACCTCAACTTCAATTGCCCTCTCTGCCGCTCTCCCGTGGTACACCGGGATGGCGTCGCGCTCACGCGCCGCCGACTCTCCCGCGACCTCCTCCACTGGTTTTCCATCAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009628 GO:0009651 GO:0009787 GO:0009789 GO:0009966 GO:0009967 GO:0009987 GO:0010498 GO:0010646 GO:0010647 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0023051 GO:0023056 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0047484 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051603 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0080134 GO:0140096 GO:1901419 GO:1901421 GO:1901564 GO:1901565 GO:1901575 GO:1905957 GO:1905959

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

171

Amino Acids

18.68

Weight (kDa)

6.33

Isoelectric Point (pI)

54.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	100 - 143	3.2e-11	Ring finger domain
zf-RING_11	PF17123	100 - 127	2.9e-08	RING-like zinc finger
zf-C3HC4_2	PF13923	101 - 142	2.6e-07	Zinc finger, C3HC4 type (RING finger)
zf-rbx1	PF12678	113 - 143	4e-06	RING-H2 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015229)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15100
fragaria_vesca	FvH4_4g26470
malus_domestica	MD13G1033600.v1.1 MD16G1035500.v1.1
prunus_persica	Prupe.1G319200_v2.0.a1
pyrus_communis	pycom13g02900 pycom16g03040
rosa_chinensis	RchiOBHm_Chr4g0434111
rosa_laevigata	RLG00000006699
rosa_multiflora	Rmu_sc0000352.1_g000035
rosa_roxburghii	Rroxscaffold_5G00375510
rosa_rugosa	Rorug04G0274200
rosa_samantha	Rh4BG336800 Rh4CG352300 Rh4DG332900
rosa_wichuraiana	Rw4G028550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	204
AatII	GACGTC	1 cut(s)	30
Acc36I	ACCTGC	1 cut(s)	328
AccB7I	CCANNNNNTGG	1 cut(s)	121
AccBSI	CCGCTC	3 cut(s)	49, 93, 429
AccII	CGCG	5 cut(s)	203, 267, 458, 466, 483
AcoI	YGGCCR	1 cut(s)	183
AcyI	GRCGYC	3 cut(s)	27, 273, 453
AfaI	GTAC	1 cut(s)	441
AfiI	CCNNNNNNNGG	5 cut(s)	121, 146, 187, 188, 288
AgsI	TTSAA	1 cut(s)	412
AjnI	CCWGG	2 cut(s)	145, 389
AluBI	AGCT	4 cut(s)	19, 75, 229, 510
AluI	AGCT	4 cut(s)	19, 75, 229, 510
Alw21I	GWGCWC	1 cut(s)	320
Alw26I	GTCTC	2 cut(s)	34, 212
Alw44I	GTGCAC	1 cut(s)	316
Ama87I	CYCGRG	1 cut(s)	193
AoxI	GGCC	4 cut(s)	124, 166, 178, 183
ApaLI	GTGCAC	1 cut(s)	316
ApeKI	GCWGC	1 cut(s)	173
AspLEI	GCGC	2 cut(s)	460, 468
AspS9I	GGNCC	3 cut(s)	124, 179, 340
AsuC2I	CCSGG	2 cut(s)	182, 446
AsuHPI	GGTGA	1 cut(s)	344
AvaI	CYCGRG	1 cut(s)	193
AvaII	GGWCC	1 cut(s)	340
BaeGI	GKGCMC	1 cut(s)	320
BanII	GRGCYC	1 cut(s)	194
Bbv12I	GWGCWC	1 cut(s)	320
BbvCI	CCTCAGC	1 cut(s)	128
BbvI	GCAGC	1 cut(s)	160
BccI	CCATC	6 cut(s)	50, 86, 144, 323, 443, 512
BceAI	ACGGC	2 cut(s)	170, 260
BcgI	CGANNNNNNTGC	4 cut(s)	152, 186, 260, 294
BciT130I	CCWGG	2 cut(s)	147, 391
BcnI	CCSGG	2 cut(s)	182, 446
BcoDI	GTCTC	2 cut(s)	34, 212
BfuAI	ACCTGC	1 cut(s)	328
BglI	GCCNNNNNGGC	1 cut(s)	182
BisI	GCNGC	4 cut(s)	174, 358, 427, 469
BlsI	GCNGC	4 cut(s)	175, 359, 428, 470
Bme1390I	CCNGG	4 cut(s)	147, 182, 391, 446
Bme18I	GGWCC	1 cut(s)	340
BmeT110I	CYCGRG	1 cut(s)	193
BmgT120I	GGNCC	3 cut(s)	124, 179, 340
BmrFI	CCNGG	4 cut(s)	147, 182, 391, 446
BpmI	CTGGAG	1 cut(s)	335
Bpu10I	CCTNAGC	1 cut(s)	128
BpuMI	CCSGG	2 cut(s)	182, 446
BsaHI	GRCGYC	3 cut(s)	27, 273, 453
BsaI	GGTCTC	1 cut(s)	212
BsaJI	CCNNGG	3 cut(s)	186, 321, 435
BsaXI	ACNNNNNCTCC	2 cut(s)	77, 107
Bsc4I	CCNNNNNNNGG	5 cut(s)	121, 146, 187, 188, 288
Bse118I	RCCGGY	1 cut(s)	176
Bse1I	ACTGG	2 cut(s)	352, 500
BseBI	CCWGG	2 cut(s)	147, 391
BseDI	CCNNGG	3 cut(s)	186, 321, 435
BseGI	GGATG	4 cut(s)	42, 136, 334, 454
BseLI	CCNNNNNNNGG	5 cut(s)	121, 146, 187, 188, 288
BseMII	CTCAG	2 cut(s)	142, 165
BseNI	ACTGG	2 cut(s)	352, 500
BseRI	GAGGAG	4 cut(s)	85, 92, 101, 479
BseSI	GKGCMC	1 cut(s)	320
BseX3I	CGGCCG	1 cut(s)	183
BseXI	GCAGC	1 cut(s)	160
Bsh1236I	CGCG	5 cut(s)	203, 267, 458, 466, 483
Bsh1285I	CGRYCG	2 cut(s)	186, 265
BshFI	GGCC	4 cut(s)	126, 168, 180, 185
BsiEI	CGRYCG	2 cut(s)	186, 265
BsiHKAI	GWGCWC	1 cut(s)	320
BsiHKCI	CYCGRG	1 cut(s)	193
BsiSI	CCGG	3 cut(s)	177, 182, 445
BslFI	GGGAC	1 cut(s)	210
BslI	CCNNNNNNNGG	5 cut(s)	121, 146, 187, 188, 288
BsmAI	GTCTC	2 cut(s)	34, 212
BsmBI	CGTCTC	1 cut(s)	34
BsmFI	GGGAC	1 cut(s)	210
BsnI	GGCC	4 cut(s)	126, 168, 180, 185
Bso31I	GGTCTC	1 cut(s)	212
BsoBI	CYCGRG	1 cut(s)	193
Bsp1286I	GDGCHC	2 cut(s)	194, 320
BspANI	GGCC	4 cut(s)	126, 168, 180, 185
BspCNI	CTCAG	2 cut(s)	141, 164
BspFNI	CGCG	5 cut(s)	203, 267, 458, 466, 483
BspMI	ACCTGC	1 cut(s)	328
BspTNI	GGTCTC	1 cut(s)	212
BsrBI	CCGCTC	3 cut(s)	49, 93, 429
BsrFI	RCCGGY	1 cut(s)	176
BsrI	ACTGG	2 cut(s)	352, 500
BssAI	RCCGGY	1 cut(s)	176
BssECI	CCNNGG	3 cut(s)	186, 321, 435
BssNI	GRCGYC	3 cut(s)	27, 273, 453
BssT1I	CCWWGG	1 cut(s)	321
Bst2UI	CCWGG	2 cut(s)	147, 391
Bst4CI	ACNGT	1 cut(s)	242
Bst6I	CTCTTC	1 cut(s)	37
BstACI	GRCGYC	3 cut(s)	27, 273, 453
BstC8I	GCNNGC	5 cut(s)	17, 73, 178, 231, 347
BstDEI	CTNAG	2 cut(s)	128, 151
BstDSI	CCRYGG	2 cut(s)	186, 435
BstF5I	GGATG	4 cut(s)	42, 136, 334, 454
BstFNI	CGCG	5 cut(s)	203, 267, 458, 466, 483
BstHHI	GCGC	2 cut(s)	460, 468
BstMAI	GTCTC	2 cut(s)	34, 212
BstMCI	CGRYCG	2 cut(s)	186, 265
BstMWI	GCNNNNNNNGC	4 cut(s)	68, 182, 309, 423
BstNI	CCWGG	2 cut(s)	147, 391
BstNSI	RCATGY	1 cut(s)	349
BstSCI	CCNGG	4 cut(s)	145, 180, 389, 444
BstSLI	GKGCMC	1 cut(s)	320
BstUI	CGCG	5 cut(s)	203, 267, 458, 466, 483
BstV1I	GCAGC	1 cut(s)	160
BstZI	CGGCCG	1 cut(s)	183
BsuRI	GGCC	4 cut(s)	126, 168, 180, 185
BtgI	CCRYGG	2 cut(s)	186, 435
BtgZI	GCGATG	2 cut(s)	43, 52
BtsCI	GGATG	4 cut(s)	42, 136, 334, 454
BtsI	GCAGTG	1 cut(s)	376
BtsIMutI	CAGTG	3 cut(s)	359, 376, 493
BveI	ACCTGC	1 cut(s)	328
Cac8I	GCNNGC	5 cut(s)	17, 73, 178, 231, 347
CfoI	GCGC	2 cut(s)	460, 468
Cfr10I	RCCGGY	1 cut(s)	176
Cfr13I	GGNCC	3 cut(s)	124, 179, 340
CseI	GACGC	2 cut(s)	281, 442
Csp6I	GTAC	1 cut(s)	440
CviAII	CATG	2 cut(s)	346, 362
CviQI	GTAC	1 cut(s)	440
DdeI	CTNAG	2 cut(s)	128, 151
DrdI	GACNNNNNNGTC	1 cut(s)	204
DseDI	GACNNNNNNGTC	1 cut(s)	204
EaeI	YGGCCR	1 cut(s)	183
EagI	CGGCCG	1 cut(s)	183
Eam1104I	CTCTTC	1 cut(s)	37
EarI	CTCTTC	1 cut(s)	37
EclXI	CGGCCG	1 cut(s)	183
Eco130I	CCWWGG	1 cut(s)	321
Eco147I	AGGCCT	1 cut(s)	168
Eco24I	GRGCYC	1 cut(s)	194
Eco31I	GGTCTC	1 cut(s)	212
Eco47I	GGWCC	1 cut(s)	340
Eco52I	CGGCCG	1 cut(s)	183
Eco88I	CYCGRG	1 cut(s)	193
EcoRII	CCWGG	2 cut(s)	145, 389
EcoT14I	CCWWGG	1 cut(s)	321
EcoT38I	GRGCYC	1 cut(s)	194
ErhI	CCWWGG	1 cut(s)	321
Esp3I	CGTCTC	1 cut(s)	34
FaeI	CATG	2 cut(s)	349, 365
FaiI	YATR	3 cut(s)	259, 347, 363
FalI	AAGNNNNNCTT	2 cut(s)	365, 397
FaqI	GGGAC	1 cut(s)	210
FatI	CATG	2 cut(s)	345, 361
FauI	CCCGC	3 cut(s)	54, 196, 488
Fnu4HI	GCNGC	4 cut(s)	174, 358, 427, 469
FokI	GGATG	4 cut(s)	29, 123, 341, 461
FriOI	GRGCYC	1 cut(s)	194
Fsp4HI	GCNGC	4 cut(s)	174, 358, 427, 469
GlaI	GCGC	2 cut(s)	459, 467
GluI	GCNGC	4 cut(s)	174, 358, 427, 469
GsuI	CTGGAG	1 cut(s)	335
HaeIII	GGCC	4 cut(s)	126, 168, 180, 185
HapII	CCGG	3 cut(s)	177, 182, 445
HgaI	GACGC	2 cut(s)	281, 442
HhaI	GCGC	2 cut(s)	460, 468
Hin1I	GRCGYC	3 cut(s)	27, 273, 453
Hin1II	CATG	2 cut(s)	349, 365
Hin6I	GCGC	2 cut(s)	458, 466
HinP1I	GCGC	2 cut(s)	458, 466
HinfI	GANTC	4 cut(s)	38, 198, 386, 474
HpaII	CCGG	3 cut(s)	177, 182, 445
HphI	GGTGA	1 cut(s)	344
Hpy166II	GTNNAC	2 cut(s)	318, 442
Hpy188I	TCNGA	3 cut(s)	37, 154, 223
Hpy188III	TCNNGA	1 cut(s)	195
Hpy8I	GTNNAC	2 cut(s)	318, 442
Hpy99I	CGWCG	5 cut(s)	29, 164, 272, 275, 458
HpyAV	CCTTC	1 cut(s)	158
HpyCH4III	ACNGT	1 cut(s)	242
HpyCH4IV	ACGT	1 cut(s)	27
HpyCH4V	TGCA	2 cut(s)	297, 318
HpyF10VI	GCNNNNNNNGC	4 cut(s)	68, 182, 309, 423
HpyF3I	CTNAG	2 cut(s)	128, 151
HpySE526I	ACGT	1 cut(s)	27
Hsp92I	GRCGYC	3 cut(s)	27, 273, 453
Hsp92II	CATG	2 cut(s)	349, 365
HspAI	GCGC	2 cut(s)	458, 466
KroI	GCCGGC	1 cut(s)	176
KroNI	GCCGGC	1 cut(s)	178
LmnI	GCTCC	3 cut(s)	80, 98, 354
Lsp1109I	GCAGC	1 cut(s)	160
MaeII	ACGT	1 cut(s)	27
MaeIII	GTNAC	2 cut(s)	6, 242
MbiI	CCGCTC	3 cut(s)	49, 93, 429
MboII	GAAGA	1 cut(s)	24
MfeI	CAATTG	2 cut(s)	298, 412
MhlI	GDGCHC	2 cut(s)	194, 320
MluCI	AATT	2 cut(s)	298, 412
MlyI	GAGTC	4 cut(s)	32, 192, 380, 468
MmeI	TCCRAC	2 cut(s)	60, 246
MroNI	GCCGGC	1 cut(s)	176
MslI	CAYNNNNRTG	1 cut(s)	447
MspA1I	CMGCKG	1 cut(s)	510
MspI	CCGG	3 cut(s)	177, 182, 445
MspR9I	CCNGG	4 cut(s)	147, 182, 391, 446
MunI	CAATTG	2 cut(s)	298, 412
MvaI	CCWGG	2 cut(s)	147, 391
MvnI	CGCG	5 cut(s)	203, 267, 458, 466, 483
MwoI	GCNNNNNNNGC	4 cut(s)	68, 182, 309, 423
NaeI	GCCGGC	1 cut(s)	178
NciI	CCSGG	2 cut(s)	182, 446
NgoMIV	GCCGGC	1 cut(s)	176
NlaIII	CATG	2 cut(s)	349, 365
NmuCI	GTSAC	1 cut(s)	242
NspI	RCATGY	1 cut(s)	349
PaeI	GCATGC	1 cut(s)	349
PceI	AGGCCT	1 cut(s)	168
PcsI	WCGNNNNNNNCGW	3 cut(s)	33, 207, 267
PdiI	GCCGGC	1 cut(s)	178
PflMI	CCANNNNNTGG	1 cut(s)	121
PkrI	GCNGC	4 cut(s)	175, 359, 428, 470
PleI	GAGTC	4 cut(s)	32, 192, 380, 468
PpsI	GAGTC	4 cut(s)	32, 192, 380, 468
Psp6I	CCWGG	2 cut(s)	145, 389
PspGI	CCWGG	2 cut(s)	145, 389
PspPI	GGNCC	3 cut(s)	124, 179, 340
PvuII	CAGCTG	1 cut(s)	510
RsaI	GTAC	1 cut(s)	441
RsaNI	GTAC	1 cut(s)	440
RseI	CAYNNNNRTG	1 cut(s)	447
SatI	GCNGC	4 cut(s)	174, 358, 427, 469
Sau96I	GGNCC	3 cut(s)	124, 179, 340
SchI	GAGTC	4 cut(s)	32, 192, 380, 468
ScrFI	CCNGG	4 cut(s)	147, 182, 391, 446
SduI	GDGCHC	2 cut(s)	194, 320
SinI	GGWCC	1 cut(s)	340
SmiMI	CAYNNNNRTG	1 cut(s)	447
SphI	GCATGC	1 cut(s)	349
Sse9I	AATT	2 cut(s)	298, 412
SseBI	AGGCCT	1 cut(s)	168
StuI	AGGCCT	1 cut(s)	168
StyD4I	CCNGG	4 cut(s)	145, 180, 389, 444
StyI	CCWWGG	1 cut(s)	321
TaaI	ACNGT	1 cut(s)	242
TaiI	ACGT	1 cut(s)	30
TaqI	TCGA	2 cut(s)	384, 396
TasI	AATT	2 cut(s)	298, 412
TauI	GCSGC	3 cut(s)	360, 429, 471
TscAI	CASTG	3 cut(s)	359, 383, 500
TseFI	GTSAC	1 cut(s)	242
TseI	GCWGC	1 cut(s)	173
Tsp45I	GTSAC	1 cut(s)	242
TspRI	CASTG	3 cut(s)	359, 383, 500
Van91I	CCANNNNNTGG	1 cut(s)	121
VneI	GTGCAC	1 cut(s)	316
VpaK11BI	GGWCC	1 cut(s)	340
XceI	RCATGY	1 cut(s)	349
XcmI	CCANNNNNNNNNTGG	1 cut(s)	143
ZraI	GACGTC	1 cut(s)	28

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.