Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0015229

Physical Location & Seq

Genomic Coordinates Forward (+)

1919451 .. 1919963

Gene Structure 513 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g03040.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

ATGGGGTTACAAAGCCAGCTGAACGACGTCTCATCCGACTCCATCCCACTCCTACTCATCGCACTCATCGCCAGTTCCATCAACCACCTCCGCTCCTCCCTCCTCACCCTCCTTCATTTTCTGGGCCTCAGCCCCCATCCCGGTCCAGGCACAGACTACGACGAAGGCGATATTGCGGGCCCGACCGTGGGCTCGGGACTCGCGGGTCCCGATAACCTGTCCGACCAACTCGCCATCAACCGCCAGTTATCCTATCCATACGACCGTGACGACGCCGTTGCCACCGCACGGGATTGCGATTGCGTGGTGTGCTTGTGCACCTTAAGGGATGGGGAGCAGGTCCGCATGCTCCAGTGCCGCCACGTGTTCCACAAGCACTGCTTCGACTCCTGCCTCAACCACCTCAACTTCAATTGCCCTCTCTGCCGCTCTCCCGTCGTAAACCTCGACGGCGGCGCGCTCCCGCGCTCCCGACTCTCCCGCGACCTCCGCCACTGGCTTTCCATCCGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009628 GO:0009651 GO:0009787 GO:0009789 GO:0009966 GO:0009967 GO:0009987 GO:0010498 GO:0010646 GO:0010647 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0023051 GO:0023056 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0047484 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051603 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0080134 GO:0140096 GO:1901419 GO:1901421 GO:1901564 GO:1901565 GO:1901575 GO:1905957 GO:1905959

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

171

Amino Acids

18.64

Weight (kDa)

6.01

Isoelectric Point (pI)

57.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	100 - 143	1.8e-08	Ring finger domain
zf-RING_11	PF17123	100 - 127	2.5e-08	RING-like zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015229)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15100
fragaria_vesca	FvH4_4g26470
malus_domestica	MD13G1033600.v1.1 MD16G1035500.v1.1
prunus_persica	Prupe.1G319200_v2.0.a1
pyrus_communis	pycom13g02900 pycom16g03040
rosa_chinensis	RchiOBHm_Chr4g0434111
rosa_laevigata	RLG00000006699
rosa_multiflora	Rmu_sc0000352.1_g000035
rosa_roxburghii	Rroxscaffold_5G00375510
rosa_rugosa	Rorug04G0274200
rosa_samantha	Rh4BG336800 Rh4CG352300 Rh4DG332900
rosa_wichuraiana	Rw4G028550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	204
AatII	GACGTC	1 cut(s)	30
Acc36I	ACCTGC	1 cut(s)	328
AccBSI	CCGCTC	2 cut(s)	93, 429
AccII	CGCG	4 cut(s)	203, 458, 466, 483
AcvI	CACGTG	1 cut(s)	364
AcyI	GRCGYC	2 cut(s)	27, 273
AfiI	CCNNNNNNNGG	5 cut(s)	140, 146, 187, 188, 288
AflII	CTTAAG	1 cut(s)	322
AflIII	ACRYGT	1 cut(s)	363
AgsI	TTSAA	1 cut(s)	412
AjnI	CCWGG	1 cut(s)	145
AluBI	AGCT	1 cut(s)	19
AluI	AGCT	1 cut(s)	19
Alw21I	GWGCWC	1 cut(s)	320
Alw26I	GTCTC	1 cut(s)	34
Alw44I	GTGCAC	1 cut(s)	316
Ama87I	CYCGRG	1 cut(s)	193
AoxI	GGCC	2 cut(s)	124, 178
ApaI	GGGCCC	1 cut(s)	182
ApaLI	GTGCAC	1 cut(s)	316
AspLEI	GCGC	3 cut(s)	458, 460, 468
AspS9I	GGNCC	6 cut(s)	124, 143, 178, 179, 206, 340
AsuC2I	CCSGG	1 cut(s)	141
AsuHPI	GGTGA	1 cut(s)	97
AvaI	CYCGRG	1 cut(s)	193
AvaII	GGWCC	3 cut(s)	143, 206, 340
BaeGI	GKGCMC	2 cut(s)	182, 320
BanII	GRGCYC	2 cut(s)	182, 194
BbrPI	CACGTG	1 cut(s)	364
Bbv12I	GWGCWC	1 cut(s)	320
BbvCI	CCTCAGC	1 cut(s)	128
BccI	CCATC	6 cut(s)	50, 86, 144, 242, 323, 512
BceAI	ACGGC	2 cut(s)	260, 466
BcgI	CGANNNNNNTGC	2 cut(s)	260, 294
BciT130I	CCWGG	1 cut(s)	147
BcnI	CCSGG	1 cut(s)	141
BcoDI	GTCTC	1 cut(s)	34
BfrI	CTTAAG	1 cut(s)	322
BfuAI	ACCTGC	1 cut(s)	328
BisI	GCNGC	3 cut(s)	358, 427, 454
BlsI	GCNGC	3 cut(s)	359, 428, 455
Bme1390I	CCNGG	2 cut(s)	141, 147
Bme18I	GGWCC	3 cut(s)	143, 206, 340
BmeT110I	CYCGRG	1 cut(s)	193
BmgT120I	GGNCC	6 cut(s)	124, 143, 178, 179, 206, 340
BmiI	GGNNCC	3 cut(s)	180, 207, 208
BmrFI	CCNGG	2 cut(s)	141, 147
BpmI	CTGGAG	1 cut(s)	335
Bpu10I	CCTNAGC	1 cut(s)	128
BpuMI	CCSGG	1 cut(s)	141
BsaAI	YACGTR	1 cut(s)	364
BsaHI	GRCGYC	2 cut(s)	27, 273
BsaJI	CCNNGG	1 cut(s)	186
BsaXI	ACNNNNNCTCC	2 cut(s)	77, 107
Bsc4I	CCNNNNNNNGG	5 cut(s)	140, 146, 187, 188, 288
Bse1I	ACTGG	4 cut(s)	72, 244, 352, 500
BseBI	CCWGG	1 cut(s)	147
BseDI	CCNNGG	1 cut(s)	186
BseGI	GGATG	5 cut(s)	32, 42, 136, 334, 504
BseLI	CCNNNNNNNGG	5 cut(s)	140, 146, 187, 188, 288
BseMII	CTCAG	1 cut(s)	142
BseNI	ACTGG	4 cut(s)	72, 244, 352, 500
BsePI	GCGCGC	1 cut(s)	456
BseRI	GAGGAG	2 cut(s)	85, 92
BseSI	GKGCMC	2 cut(s)	182, 320
Bsh1236I	CGCG	4 cut(s)	203, 458, 466, 483
Bsh1285I	CGRYCG	2 cut(s)	186, 265
BshFI	GGCC	2 cut(s)	126, 180
BsiEI	CGRYCG	2 cut(s)	186, 265
BsiHKAI	GWGCWC	1 cut(s)	320
BsiHKCI	CYCGRG	1 cut(s)	193
BsiSI	CCGG	1 cut(s)	141
BslFI	GGGAC	2 cut(s)	192, 210
BslI	CCNNNNNNNGG	5 cut(s)	140, 146, 187, 188, 288
BsmAI	GTCTC	1 cut(s)	34
BsmBI	CGTCTC	1 cut(s)	34
BsmFI	GGGAC	2 cut(s)	192, 210
BsnI	GGCC	2 cut(s)	126, 180
BsoBI	CYCGRG	1 cut(s)	193
Bsp120I	GGGCCC	1 cut(s)	178
Bsp1286I	GDGCHC	3 cut(s)	182, 194, 320
BspANI	GGCC	2 cut(s)	126, 180
BspCNI	CTCAG	1 cut(s)	141
BspFNI	CGCG	4 cut(s)	203, 458, 466, 483
BspLI	GGNNCC	3 cut(s)	180, 207, 208
BspMI	ACCTGC	1 cut(s)	328
BspTI	CTTAAG	1 cut(s)	322
BsrBI	CCGCTC	2 cut(s)	93, 429
BsrI	ACTGG	4 cut(s)	72, 244, 352, 500
BssECI	CCNNGG	1 cut(s)	186
BssHII	GCGCGC	1 cut(s)	456
BssNI	GRCGYC	2 cut(s)	27, 273
Bst2UI	CCWGG	1 cut(s)	147
Bst4CI	ACNGT	2 cut(s)	187, 266
BstACI	GRCGYC	2 cut(s)	27, 273
BstAFI	CTTAAG	1 cut(s)	322
BstBAI	YACGTR	1 cut(s)	364
BstC8I	GCNNGC	4 cut(s)	17, 178, 347, 458
BstDEI	CTNAG	1 cut(s)	128
BstDSI	CCRYGG	1 cut(s)	186
BstF5I	GGATG	5 cut(s)	32, 42, 136, 334, 504
BstFNI	CGCG	4 cut(s)	203, 458, 466, 483
BstHHI	GCGC	3 cut(s)	458, 460, 468
BstMAI	GTCTC	1 cut(s)	34
BstMCI	CGRYCG	2 cut(s)	186, 265
BstMWI	GCNNNNNNNGC	4 cut(s)	68, 309, 423, 489
BstNI	CCWGG	1 cut(s)	147
BstNSI	RCATGY	1 cut(s)	349
BstSCI	CCNGG	2 cut(s)	139, 145
BstSLI	GKGCMC	2 cut(s)	182, 320
BstUI	CGCG	4 cut(s)	203, 458, 466, 483
BsuRI	GGCC	2 cut(s)	126, 180
BtgI	CCRYGG	1 cut(s)	186
BtgZI	GCGATG	2 cut(s)	43, 52
BtsCI	GGATG	5 cut(s)	32, 42, 136, 334, 504
BtsI	GCAGTG	1 cut(s)	376
BtsIMutI	CAGTG	3 cut(s)	359, 376, 493
BveI	ACCTGC	1 cut(s)	328
Cac8I	GCNNGC	4 cut(s)	17, 178, 347, 458
CfoI	GCGC	3 cut(s)	458, 460, 468
Cfr13I	GGNCC	6 cut(s)	124, 143, 178, 179, 206, 340
CseI	GACGC	1 cut(s)	281
CviAII	CATG	1 cut(s)	346
CviJI	RGCY	7 cut(s)	15, 19, 126, 132, 180, 192, 499
CviKI_1	RGCY	7 cut(s)	15, 19, 126, 132, 180, 192, 499
DdeI	CTNAG	1 cut(s)	128
DrdI	GACNNNNNNGTC	1 cut(s)	204
DseDI	GACNNNNNNGTC	1 cut(s)	204
EciI	GGCGGA	1 cut(s)	479
Eco24I	GRGCYC	2 cut(s)	182, 194
Eco47I	GGWCC	3 cut(s)	143, 206, 340
Eco72I	CACGTG	1 cut(s)	364
Eco88I	CYCGRG	1 cut(s)	193
EcoO109I	RGGNCCY	1 cut(s)	206
EcoRII	CCWGG	1 cut(s)	145
EcoT38I	GRGCYC	2 cut(s)	182, 194
Esp3I	CGTCTC	1 cut(s)	34
FaeI	CATG	1 cut(s)	349
FaiI	YATR	2 cut(s)	259, 347
FalI	AAGNNNNNCTT	2 cut(s)	365, 397
FaqI	GGGAC	2 cut(s)	192, 210
FatI	CATG	1 cut(s)	345
FauI	CCCGC	4 cut(s)	169, 196, 471, 488
Fnu4HI	GCNGC	3 cut(s)	358, 427, 454
FokI	GGATG	5 cut(s)	19, 29, 123, 341, 491
FriOI	GRGCYC	2 cut(s)	182, 194
Fsp4HI	GCNGC	3 cut(s)	358, 427, 454
GlaI	GCGC	3 cut(s)	457, 459, 467
GluI	GCNGC	3 cut(s)	358, 427, 454
GsuI	CTGGAG	1 cut(s)	335
HaeIII	GGCC	2 cut(s)	126, 180
HapII	CCGG	1 cut(s)	141
HgaI	GACGC	1 cut(s)	281
HhaI	GCGC	3 cut(s)	458, 460, 468
Hin1I	GRCGYC	2 cut(s)	27, 273
Hin1II	CATG	1 cut(s)	349
Hin6I	GCGC	3 cut(s)	456, 458, 466
HinP1I	GCGC	3 cut(s)	456, 458, 466
HinfI	GANTC	4 cut(s)	38, 198, 386, 474
HpaII	CCGG	1 cut(s)	141
HphI	GGTGA	1 cut(s)	97
Hpy166II	GTNNAC	2 cut(s)	318, 442
Hpy188I	TCNGA	2 cut(s)	37, 223
Hpy188III	TCNNGA	3 cut(s)	195, 209, 471
Hpy8I	GTNNAC	2 cut(s)	318, 442
Hpy99I	CGWCG	5 cut(s)	29, 164, 275, 440, 452
HpyAV	CCTTC	2 cut(s)	122, 158
HpyCH4III	ACNGT	2 cut(s)	187, 266
HpyCH4IV	ACGT	2 cut(s)	27, 363
HpyCH4V	TGCA	1 cut(s)	318
HpyF10VI	GCNNNNNNNGC	4 cut(s)	68, 309, 423, 489
HpyF3I	CTNAG	1 cut(s)	128
HpySE526I	ACGT	2 cut(s)	27, 363
Hsp92I	GRCGYC	2 cut(s)	27, 273
Hsp92II	CATG	1 cut(s)	349
HspAI	GCGC	3 cut(s)	456, 458, 466
KflI	GGGWCCC	1 cut(s)	206
LmnI	GCTCC	5 cut(s)	98, 334, 354, 465, 473
MaeII	ACGT	2 cut(s)	27, 363
MaeIII	GTNAC	2 cut(s)	6, 266
MbiI	CCGCTC	2 cut(s)	93, 429
MfeI	CAATTG	1 cut(s)	412
MhlI	GDGCHC	3 cut(s)	182, 194, 320
MluCI	AATT	1 cut(s)	412
MlyI	GAGTC	4 cut(s)	32, 192, 380, 468
MmeI	TCCRAC	2 cut(s)	60, 246
MseI	TTAA	1 cut(s)	323
MspA1I	CMGCKG	2 cut(s)	19, 510
MspCI	CTTAAG	1 cut(s)	322
MspI	CCGG	1 cut(s)	141
MspR9I	CCNGG	2 cut(s)	141, 147
MunI	CAATTG	1 cut(s)	412
MvaI	CCWGG	1 cut(s)	147
MvnI	CGCG	4 cut(s)	203, 458, 466, 483
MwoI	GCNNNNNNNGC	4 cut(s)	68, 309, 423, 489
NciI	CCSGG	1 cut(s)	141
NlaIII	CATG	1 cut(s)	349
NlaIV	GGNNCC	3 cut(s)	180, 207, 208
NmuCI	GTSAC	1 cut(s)	266
NspI	RCATGY	1 cut(s)	349
PaeI	GCATGC	1 cut(s)	349
PauI	GCGCGC	1 cut(s)	456
PcsI	WCGNNNNNNNCGW	5 cut(s)	33, 165, 207, 267, 444
PkrI	GCNGC	3 cut(s)	359, 428, 455
PleI	GAGTC	4 cut(s)	32, 192, 380, 468
PmaCI	CACGTG	1 cut(s)	364
PmlI	CACGTG	1 cut(s)	364
PpsI	GAGTC	4 cut(s)	32, 192, 380, 468
Ppu21I	YACGTR	1 cut(s)	364
PpuMI	RGGWCCY	1 cut(s)	206
Psp5II	RGGWCCY	1 cut(s)	206
Psp6I	CCWGG	1 cut(s)	145
PspCI	CACGTG	1 cut(s)	364
PspGI	CCWGG	1 cut(s)	145
PspN4I	GGNNCC	3 cut(s)	180, 207, 208
PspOMI	GGGCCC	1 cut(s)	178
PspPI	GGNCC	6 cut(s)	124, 143, 178, 179, 206, 340
PspPPI	RGGWCCY	1 cut(s)	206
PteI	GCGCGC	1 cut(s)	456
PvuII	CAGCTG	1 cut(s)	19
SaqAI	TTAA	1 cut(s)	323
SatI	GCNGC	3 cut(s)	358, 427, 454
Sau96I	GGNCC	6 cut(s)	124, 143, 178, 179, 206, 340
SchI	GAGTC	4 cut(s)	32, 192, 380, 468
ScrFI	CCNGG	2 cut(s)	141, 147
SduI	GDGCHC	3 cut(s)	182, 194, 320
SinI	GGWCC	3 cut(s)	143, 206, 340
SmlI	CTYRAG	1 cut(s)	322
SmoI	CTYRAG	1 cut(s)	322
SphI	GCATGC	1 cut(s)	349
Sse9I	AATT	1 cut(s)	412
StyD4I	CCNGG	2 cut(s)	139, 145
TaaI	ACNGT	2 cut(s)	187, 266
TaiI	ACGT	2 cut(s)	30, 366
TaqI	TCGA	2 cut(s)	384, 447
TasI	AATT	1 cut(s)	412
TauI	GCSGC	3 cut(s)	360, 429, 456
Tru1I	TTAA	1 cut(s)	323
Tru9I	TTAA	1 cut(s)	323
TscAI	CASTG	3 cut(s)	359, 383, 500
TseFI	GTSAC	1 cut(s)	266
Tsp45I	GTSAC	1 cut(s)	266
TspDTI	ATGAA	1 cut(s)	104
TspRI	CASTG	3 cut(s)	359, 383, 500
Vha464I	CTTAAG	1 cut(s)	322
VneI	GTGCAC	1 cut(s)	316
VpaK11BI	GGWCC	3 cut(s)	143, 206, 340
XceI	RCATGY	1 cut(s)	349
ZraI	GACGTC	1 cut(s)	28

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.