AT1G15760

BEST Arabidopsis thaliana protein match is

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0014165
Physical Location & Seq
Forward (+)
5425616 .. 5426666
1051 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G15760.1

Sequence Viewer

Length: 609 bp
ATGGAAGATTGGTGGTTTTCATGGCTCTCTAGAACAAACCTTGAACCTTCTCTCATCCACGAATACGGCCTCTCCTTCTCTCAGAACGAGCTCGAACACGAAGACATTTCTTACTTCGACCACGAATTTCTCCAGAGCATGGGAATCTCTATCGCCAAACACCGTCTCGAGATTCTCAAACTCGCTCGTCGAGATCGCAAGAACTCTCCTCCTCTCACCTCTCGTTCCATCTCCAGAGTCGTGACTGCGATTAAGAAAACCAGGAAATGTTTATCCGATCACGTACGCGCCTGGATCCGCCGTGAAGAAGAGTCGGCGTCGTCTCGAGCTCTGGTGTTGGTGCCGAAGAAGACTAGCAACGGGATTGGGAAGTGGAGAGGTGGATTCCTGAAGAGGAACAAGAGATCTGTGATGCCGAGCAATGGAAATGGTGGATTGGAGAAGCAAGAGAGGTTGTTGTTGACCAATGGGACTCCTTGTAGAATCGATAGCTTCTCAAGTCCCATGGTTTTCGATTACAGTTTCAAGGATGAGAAACTTTACGCTCAAGATACTTATTTTGAAGATATCAAATGGGATTCAATGTTTCAGAATCTCAAACCTACTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SAM_2

Protein Analysis

202

Amino Acids

23.59

Weight (kDa)

9.44

Isoelectric Point (pI)

52.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014165)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G15760 AT1G80520
fragaria_vesca FvH4_6g29130
malus_domestica MD00G1182100.v1.1 MD17G1217700.v1.1
prunus_persica Prupe.3G093400_v2.0.a1
pyrus_communis pycom17g22200
rosa_chinensis RchiOBHm_Chr2g0134301
rosa_laevigata RLG00000019385
rosa_multiflora Rmu_sc0014586.1_g000006
rosa_roxburghii Rroxscaffold_2G00110350
rosa_rugosa Rorug02G0316000
rosa_samantha Rh2AG368700 Rh2BG374700 Rh2CG352400 Rh2DG392000
rosa_wichuraiana Rw2G030040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 340
AccB7I CCANNNNNTGG 1 cut(s) 139
AccII CGCG 1 cut(s) 288
AciI CCGC 1 cut(s) 298
AclWI GGATC 2 cut(s) 289, 302
AcsI RAATTY 1 cut(s) 125
AcuI CTGAAG 1 cut(s) 410
AcyI GRCGYC 1 cut(s) 317
AfaI GTAC 1 cut(s) 285
AfiI CCNNNNNNNGG 2 cut(s) 139, 422
AgsI TTSAA 4 cut(s) 44, 526, 563, 582
AjnI CCWGG 2 cut(s) 260, 290
AluBI AGCT 3 cut(s) 91, 329, 492
AluI AGCT 3 cut(s) 91, 329, 492
Alw21I GWGCWC 2 cut(s) 93, 331
Alw26I GTCTC 2 cut(s) 170, 327
AlwI GGATC 2 cut(s) 289, 302
Ama87I CYCGRG 2 cut(s) 167, 324
AoxI GGCC 1 cut(s) 67
ApoI RAATTY 1 cut(s) 125
AspLEI GCGC 1 cut(s) 290
AsuHPI GGTGA 1 cut(s) 208
AvaI CYCGRG 2 cut(s) 167, 324
BamHI GGATCC 1 cut(s) 294
BanI GGYRCC 1 cut(s) 340
BanII GRGCYC 2 cut(s) 93, 331
BbsI GAAGAC 2 cut(s) 108, 356
Bbv12I GWGCWC 2 cut(s) 93, 331
BccI CCATC 1 cut(s) 236
BceAI ACGGC 2 cut(s) 82, 285
BciT130I CCWGG 2 cut(s) 262, 292
BcoDI GTCTC 2 cut(s) 170, 327
BfaI CTAG 2 cut(s) 30, 354
BglII AGATCT 1 cut(s) 404
Bme1390I CCNGG 2 cut(s) 262, 292
BmeT110I CYCGRG 2 cut(s) 167, 324
BmiI GGNNCC 2 cut(s) 296, 342
BmrFI CCNGG 2 cut(s) 262, 292
BmsI GCATC 1 cut(s) 402
BpiI GAAGAC 2 cut(s) 108, 356
BpmI CTGGAG 2 cut(s) 116, 217
BpuEI CTTGAG 2 cut(s) 481, 531
Bsa29I ATCGAT 1 cut(s) 486
BsaAI YACGTR 1 cut(s) 283
BsaHI GRCGYC 1 cut(s) 317
BsaJI CCNNGG 1 cut(s) 504
BsaXI ACNNNNNCTCC 2 cut(s) 56, 86
Bsc4I CCNNNNNNNGG 2 cut(s) 139, 422
Bse3DI GCAATG 1 cut(s) 427
BseBI CCWGG 2 cut(s) 262, 292
BseCI ATCGAT 1 cut(s) 486
BseDI CCNNGG 1 cut(s) 504
BseGI GGATG 2 cut(s) 54, 535
BseLI CCNNNNNNNGG 2 cut(s) 139, 422
BseMI GCAATG 1 cut(s) 427
BseMII CTCAG 1 cut(s) 95
BseRI GAGGAG 2 cut(s) 198, 201
Bsh1236I CGCG 1 cut(s) 288
BshFI GGCC 1 cut(s) 69
BshNI GGYRCC 1 cut(s) 340
BshVI ATCGAT 1 cut(s) 486
BsiHKAI GWGCWC 2 cut(s) 93, 331
BsiHKCI CYCGRG 2 cut(s) 167, 324
BsiWI CGTACG 1 cut(s) 283
BslFI GGGAC 2 cut(s) 484, 486
BslI CCNNNNNNNGG 2 cut(s) 139, 422
BsmAI GTCTC 2 cut(s) 170, 327
BsmBI CGTCTC 2 cut(s) 170, 327
BsmFI GGGAC 2 cut(s) 484, 486
BsnI GGCC 1 cut(s) 69
BsoBI CYCGRG 2 cut(s) 167, 324
Bsp1286I GDGCHC 2 cut(s) 93, 331
Bsp143I GATC 4 cut(s) 193, 277, 294, 404
Bsp19I CCATGG 1 cut(s) 504
BspACI CCGC 1 cut(s) 298
BspANI GGCC 1 cut(s) 69
BspCNI CTCAG 1 cut(s) 94
BspDI ATCGAT 1 cut(s) 486
BspFNI CGCG 1 cut(s) 288
BspLI GGNNCC 2 cut(s) 296, 342
BspPI GGATC 2 cut(s) 289, 302
BspT107I GGYRCC 1 cut(s) 340
BsrDI GCAATG 1 cut(s) 427
BssECI CCNNGG 1 cut(s) 504
BssMI GATC 4 cut(s) 193, 277, 294, 404
BssNI GRCGYC 1 cut(s) 317
BssT1I CCWWGG 1 cut(s) 504
Bst2UI CCWGG 2 cut(s) 262, 292
Bst4CI ACNGT 2 cut(s) 164, 521
Bst6I CTCTTC 2 cut(s) 303, 386
BstACI GRCGYC 1 cut(s) 317
BstBAI YACGTR 1 cut(s) 283
BstDEI CTNAG 2 cut(s) 81, 606
BstDSI CCRYGG 1 cut(s) 504
BstF5I GGATG 2 cut(s) 54, 535
BstFNI CGCG 1 cut(s) 288
BstHHI GCGC 1 cut(s) 290
BstKTI GATC 4 cut(s) 196, 280, 297, 407
BstMAI GTCTC 2 cut(s) 170, 327
BstMBI GATC 4 cut(s) 193, 277, 294, 404
BstNI CCWGG 2 cut(s) 262, 292
BstSCI CCNGG 2 cut(s) 260, 290
BstUI CGCG 1 cut(s) 288
BstV2I GAAGAC 2 cut(s) 108, 356
BstX2I RGATCY 2 cut(s) 294, 404
BstYI RGATCY 2 cut(s) 294, 404
Bsu15I ATCGAT 1 cut(s) 486
BsuRI GGCC 1 cut(s) 69
BsuTUI ATCGAT 1 cut(s) 486
BtgI CCRYGG 1 cut(s) 504
BtsCI GGATG 2 cut(s) 54, 535
CfoI GCGC 1 cut(s) 290
ClaI ATCGAT 1 cut(s) 486
CseI GACGC 1 cut(s) 306
Csp6I GTAC 1 cut(s) 284
CviAII CATG 3 cut(s) 21, 139, 505
CviJI RGCY 5 cut(s) 25, 69, 91, 329, 492
CviKI_1 RGCY 5 cut(s) 25, 69, 91, 329, 492
CviQI GTAC 1 cut(s) 284
DdeI CTNAG 2 cut(s) 81, 606
DpnI GATC 4 cut(s) 195, 279, 296, 406
DpnII GATC 4 cut(s) 193, 277, 294, 404
Eam1104I CTCTTC 2 cut(s) 303, 386
EarI CTCTTC 2 cut(s) 303, 386
EciI GGCGGA 1 cut(s) 287
Ecl136II GAGCTC 2 cut(s) 91, 329
Eco130I CCWWGG 1 cut(s) 504
Eco24I GRGCYC 2 cut(s) 93, 331
Eco32I GATATC 1 cut(s) 568
Eco53kI GAGCTC 2 cut(s) 91, 329
Eco57I CTGAAG 1 cut(s) 410
Eco88I CYCGRG 2 cut(s) 167, 324
EcoICRI GAGCTC 2 cut(s) 91, 329
EcoRII CCWGG 2 cut(s) 260, 290
EcoRV GATATC 1 cut(s) 568
EcoT14I CCWWGG 1 cut(s) 504
EcoT38I GRGCYC 2 cut(s) 93, 331
ErhI CCWWGG 1 cut(s) 504
Esp3I CGTCTC 2 cut(s) 170, 327
FaeI CATG 3 cut(s) 24, 142, 508
FaiI YATR 3 cut(s) 22, 140, 506
FaqI GGGAC 2 cut(s) 484, 486
FatI CATG 3 cut(s) 20, 138, 504
FokI GGATG 2 cut(s) 41, 542
FriOI GRGCYC 2 cut(s) 93, 331
FspBI CTAG 2 cut(s) 30, 354
GlaI GCGC 1 cut(s) 289
GsuI CTGGAG 2 cut(s) 116, 217
HaeIII GGCC 1 cut(s) 69
HgaI GACGC 1 cut(s) 306
HhaI GCGC 1 cut(s) 290
Hin1I GRCGYC 1 cut(s) 317
Hin1II CATG 3 cut(s) 24, 142, 508
Hin6I GCGC 1 cut(s) 288
HinP1I GCGC 1 cut(s) 288
HincII GTYRAC 1 cut(s) 462
HindII GTYRAC 1 cut(s) 462
HinfI GANTC 9 cut(s) 144, 172, 237, 311, 384, 472, 483, 578, 592
HphI GGTGA 1 cut(s) 208
Hpy166II GTNNAC 1 cut(s) 462
Hpy188I TCNGA 3 cut(s) 84, 277, 591
Hpy8I GTNNAC 1 cut(s) 462
Hpy99I CGWCG 2 cut(s) 192, 322
HpyAV CCTTC 2 cut(s) 57, 85
HpyCH4III ACNGT 2 cut(s) 164, 521
HpyCH4IV ACGT 1 cut(s) 282
HpyF3I CTNAG 2 cut(s) 81, 606
HpySE526I ACGT 1 cut(s) 282
Hsp92I GRCGYC 1 cut(s) 317
Hsp92II CATG 3 cut(s) 24, 142, 508
HspAI GCGC 1 cut(s) 288
Kzo9I GATC 4 cut(s) 193, 277, 294, 404
LpnPI CCDG 8 cut(s) 146, 247, 247, 274, 277, 304, 317, 401
LweI GCATC 1 cut(s) 402
MaeI CTAG 2 cut(s) 30, 354
MaeII ACGT 1 cut(s) 282
MaeIII GTNAC 1 cut(s) 241
MalI GATC 4 cut(s) 195, 279, 296, 406
MboI GATC 4 cut(s) 193, 277, 294, 404
MboII GAAGA 8 cut(s) 17, 113, 317, 320, 358, 361, 403, 575
MflI RGATCY 2 cut(s) 294, 404
MhlI GDGCHC 2 cut(s) 93, 331
MluCI AATT 1 cut(s) 125
MlyI GAGTC 3 cut(s) 246, 320, 466
MnlI CCTC 7 cut(s) 80, 219, 222, 229, 371, 387, 444
MseI TTAA 1 cut(s) 252
MspR9I CCNGG 2 cut(s) 262, 292
MvaI CCWGG 2 cut(s) 262, 292
MvnI CGCG 1 cut(s) 288
NcoI CCATGG 1 cut(s) 504
NdeII GATC 4 cut(s) 193, 277, 294, 404
NlaIII CATG 3 cut(s) 24, 142, 508
NlaIV GGNNCC 2 cut(s) 296, 342
NmeAIII GCCGAG 1 cut(s) 441
NmuCI GTSAC 1 cut(s) 241
PaeR7I CTCGAG 2 cut(s) 167, 324
PfeI GAWTC 6 cut(s) 144, 172, 384, 483, 578, 592
Pfl23II CGTACG 1 cut(s) 283
PflMI CCANNNNNTGG 1 cut(s) 139
PleI GAGTC 3 cut(s) 245, 319, 466
PpsI GAGTC 3 cut(s) 245, 319, 466
Ppu21I YACGTR 1 cut(s) 283
Psp124BI GAGCTC 2 cut(s) 93, 331
Psp6I CCWGG 2 cut(s) 260, 290
PspGI CCWGG 2 cut(s) 260, 290
PspLI CGTACG 1 cut(s) 283
PspN4I GGNNCC 2 cut(s) 296, 342
PsuI RGATCY 2 cut(s) 294, 404
RsaI GTAC 1 cut(s) 285
RsaNI GTAC 1 cut(s) 284
SacI GAGCTC 2 cut(s) 93, 331
SaqAI TTAA 1 cut(s) 252
Sau3AI GATC 4 cut(s) 193, 277, 294, 404
SchI GAGTC 3 cut(s) 246, 320, 466
ScrFI CCNGG 2 cut(s) 262, 292
SduI GDGCHC 2 cut(s) 93, 331
SfaNI GCATC 1 cut(s) 402
Sfr274I CTCGAG 2 cut(s) 167, 324
SlaI CTCGAG 2 cut(s) 167, 324
SmlI CTYRAG 4 cut(s) 167, 324, 496, 546
SmoI CTYRAG 4 cut(s) 167, 324, 496, 546
Sse9I AATT 1 cut(s) 125
SsiI CCGC 1 cut(s) 298
SspMI CTAG 2 cut(s) 30, 354
SstI GAGCTC 2 cut(s) 93, 331
StyD4I CCNGG 2 cut(s) 260, 290
StyI CCWWGG 1 cut(s) 504
TaaI ACNGT 2 cut(s) 164, 521
TaiI ACGT 1 cut(s) 285
TaqI TCGA 7 cut(s) 93, 117, 168, 190, 325, 486, 513
TasI AATT 1 cut(s) 125
TfiI GAWTC 6 cut(s) 144, 172, 384, 483, 578, 592
Tru1I TTAA 1 cut(s) 252
Tru9I TTAA 1 cut(s) 252
TseFI GTSAC 1 cut(s) 241
Tsp45I GTSAC 1 cut(s) 241
TspDTI ATGAA 1 cut(s) 9
Van91I CCANNNNNTGG 1 cut(s) 139
XapI RAATTY 1 cut(s) 125
XbaI TCTAGA 1 cut(s) 29
XhoI CTCGAG 2 cut(s) 167, 324
XspI CTAG 2 cut(s) 30, 354
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.