FvH4_6g29130

Sterile alpha motif (SAM) domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0014165
Physical Location & Seq
Reverse (-)
22468651 .. 22469271
621 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g29130.t1

Sequence Viewer

Length: 621 bp
ATGGATTGGTTCTCATGGCTCTCCAAAACTGGCCTAGAGCCCTCGCTTGTGTACGAGTATGGTCTTTGCTTTGCTCACAACGAGCTAGAAGAAGAAGACATAGTCTACTTCAACCACGAGTTTCTTCAAAGCATGGGGATCTCCATAGCCAAACACAGGCTAGAGATCCTCAAGCTTGGCAGAAAAGAAAAGGGTAGACTAGCAAGTAGCACTCCCCGGCCCATGACCAGGCTTATAGTGGCGATCAAGAAGACCAAGAGGTGTTTTGCTGAGTTCGTACGGACGTGGACTCGCCGCAGTGAGGATTCTTCAGCTCTGGCGCTCGTGCCGAGGCCAAGTAATTACAGGGCGAGGTTTAGAGGAGCCATGATGAAGAGGAACAAGAAGCTGGGGGTGACCAAACAAGTACAAGTACAAGGCACTAGGTTGTTGCTTACCAATGGTACAGCTGGTACTAGTCCTCTGGTTTCCGGGCAGCCTCACGGTGACGGTTTTTCAAGTCCGGTGGTGTACGATCTTCGAAAGGAGGAGAAGATGGACGCAGATGACGATGGTTACTGGTCTACCGGACTTGAAGAGATCAGGTGGGATACTATGTTCCAAGACTTGAAACCTACCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SAM_2

Protein Analysis

207

Amino Acids

23.62

Weight (kDa)

9.32

Isoelectric Point (pI)

43.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014165)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G15760 AT1G80520
fragaria_vesca FvH4_6g29130
malus_domestica MD00G1182100.v1.1 MD17G1217700.v1.1
prunus_persica Prupe.3G093400_v2.0.a1
pyrus_communis pycom17g22200
rosa_chinensis RchiOBHm_Chr2g0134301
rosa_laevigata RLG00000019385
rosa_multiflora Rmu_sc0014586.1_g000006
rosa_roxburghii Rroxscaffold_2G00110350
rosa_rugosa Rorug02G0316000
rosa_samantha Rh2AG368700 Rh2BG374700 Rh2CG352400 Rh2DG392000
rosa_wichuraiana Rw2G030040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 3 cut(s) 105, 196, 563
AciI CCGC 1 cut(s) 295
AclWI GGATC 2 cut(s) 146, 160
AcuI CTGAAG 1 cut(s) 294
AfaI GTAC 7 cut(s) 53, 279, 408, 414, 445, 454, 512
AfiI CCNNNNNNNGG 3 cut(s) 156, 228, 301
AgsI TTSAA 5 cut(s) 112, 128, 498, 575, 610
AhlI ACTAGT 1 cut(s) 455
AjiI CACGTC 1 cut(s) 285
AjnI CCWGG 1 cut(s) 227
AloI GAACNNNNNNTCC 2 cut(s) 581, 613
AluBI AGCT 5 cut(s) 85, 175, 314, 388, 449
AluI AGCT 5 cut(s) 85, 175, 314, 388, 449
AlwI GGATC 2 cut(s) 146, 160
AoxI GGCC 3 cut(s) 31, 218, 332
ApeKI GCWGC 1 cut(s) 475
AspLEI GCGC 1 cut(s) 322
AspS9I GGNCC 1 cut(s) 219
AsuC2I CCSGG 2 cut(s) 217, 472
AsuHPI GGTGA 2 cut(s) 406, 497
AsuII TTCGAA 1 cut(s) 520
BanII GRGCYC 1 cut(s) 42
BauI CACGAG 2 cut(s) 116, 323
BbsI GAAGAC 2 cut(s) 102, 257
BbvI GCAGC 1 cut(s) 487
BccI CCATC 2 cut(s) 529, 545
BciT130I CCWGG 1 cut(s) 229
BciVI GTATCC 1 cut(s) 583
BcnI CCSGG 2 cut(s) 217, 472
BcuI ACTAGT 1 cut(s) 455
BfaI CTAG 6 cut(s) 35, 86, 161, 200, 423, 456
BfoI RGCGCY 1 cut(s) 323
BfuI GTATCC 1 cut(s) 583
BisI GCNGC 2 cut(s) 295, 476
BlsI GCNGC 2 cut(s) 296, 477
Bme1390I CCNGG 3 cut(s) 217, 229, 472
BmgBI CACGTC 1 cut(s) 285
BmgT120I GGNCC 1 cut(s) 219
BmiI GGNNCC 1 cut(s) 364
BmrFI CCNGG 3 cut(s) 217, 229, 472
BpiI GAAGAC 2 cut(s) 102, 257
Bpu14I TTCGAA 1 cut(s) 520
BpuEI CTTGAG 1 cut(s) 155
BpuMI CCSGG 2 cut(s) 217, 472
BsaJI CCNNGG 2 cut(s) 215, 329
BsaWI WCCGGW 2 cut(s) 502, 566
Bsc4I CCNNNNNNNGG 3 cut(s) 156, 228, 301
Bse1I ACTGG 2 cut(s) 34, 563
BseBI CCWGG 1 cut(s) 229
BseDI CCNNGG 2 cut(s) 215, 329
BseLI CCNNNNNNNGG 3 cut(s) 156, 228, 301
BseMII CTCAG 1 cut(s) 261
BseNI ACTGG 2 cut(s) 34, 563
BseRI GAGGAG 2 cut(s) 375, 542
BseXI GCAGC 1 cut(s) 487
BseYI CCCAGC 1 cut(s) 388
BshFI GGCC 3 cut(s) 33, 220, 334
BsiSI CCGG 4 cut(s) 217, 471, 503, 567
BsiWI CGTACG 1 cut(s) 277
BslI CCNNNNNNNGG 3 cut(s) 156, 228, 301
BsnI GGCC 3 cut(s) 33, 220, 334
Bsp119I TTCGAA 1 cut(s) 520
Bsp1286I GDGCHC 1 cut(s) 42
Bsp143I GATC 5 cut(s) 138, 165, 243, 514, 579
BspACI CCGC 1 cut(s) 295
BspANI GGCC 3 cut(s) 33, 220, 334
BspCNI CTCAG 1 cut(s) 262
BspLI GGNNCC 1 cut(s) 364
BspPI GGATC 2 cut(s) 146, 160
BspT104I TTCGAA 1 cut(s) 520
BsrI ACTGG 2 cut(s) 34, 563
BssECI CCNNGG 2 cut(s) 215, 329
BssMI GATC 5 cut(s) 138, 165, 243, 514, 579
BssSI CACGAG 2 cut(s) 116, 323
Bst2BI CACGAG 2 cut(s) 116, 323
Bst2UI CCWGG 1 cut(s) 229
Bst4CI ACNGT 2 cut(s) 485, 491
Bst6I CTCTTC 2 cut(s) 368, 570
BstBI TTCGAA 1 cut(s) 520
BstDEI CTNAG 1 cut(s) 270
BstEII GGTNACC 1 cut(s) 394
BstH2I RGCGCY 1 cut(s) 323
BstHHI GCGC 1 cut(s) 322
BstKTI GATC 5 cut(s) 141, 168, 246, 517, 582
BstMBI GATC 5 cut(s) 138, 165, 243, 514, 579
BstNI CCWGG 1 cut(s) 229
BstPI GGTNACC 1 cut(s) 394
BstSCI CCNGG 3 cut(s) 215, 227, 470
BstV1I GCAGC 1 cut(s) 487
BstV2I GAAGAC 2 cut(s) 102, 257
BstX2I RGATCY 2 cut(s) 138, 165
BstYI RGATCY 2 cut(s) 138, 165
BsuI GTATCC 1 cut(s) 583
BsuRI GGCC 3 cut(s) 33, 220, 334
BtrI CACGTC 1 cut(s) 285
BtsI GCAGTG 1 cut(s) 304
BtsIMutI CAGTG 1 cut(s) 304
CfoI GCGC 1 cut(s) 322
Cfr13I GGNCC 1 cut(s) 219
CseI GACGC 1 cut(s) 548
Csp6I GTAC 7 cut(s) 52, 278, 407, 413, 444, 453, 511
CspCI CAANNNNNGTGG 2 cut(s) 486, 521
CviAII CATG 4 cut(s) 15, 133, 223, 367
CviQI GTAC 7 cut(s) 52, 278, 407, 413, 444, 453, 511
DdeI CTNAG 1 cut(s) 270
DpnI GATC 5 cut(s) 140, 167, 245, 516, 581
DpnII GATC 5 cut(s) 138, 165, 243, 514, 579
Eam1104I CTCTTC 2 cut(s) 368, 570
EarI CTCTTC 2 cut(s) 368, 570
Eco24I GRGCYC 1 cut(s) 42
Eco57I CTGAAG 1 cut(s) 294
Eco91I GGTNACC 1 cut(s) 394
EcoO65I GGTNACC 1 cut(s) 394
EcoRII CCWGG 1 cut(s) 227
EcoT38I GRGCYC 1 cut(s) 42
FaeI CATG 4 cut(s) 18, 136, 226, 370
FaiI YATR 9 cut(s) 16, 60, 101, 134, 146, 224, 236, 368, 596
FatI CATG 4 cut(s) 14, 132, 222, 366
FblI GTMKAC 3 cut(s) 105, 196, 563
Fnu4HI GCNGC 2 cut(s) 295, 476
FriOI GRGCYC 1 cut(s) 42
Fsp4HI GCNGC 2 cut(s) 295, 476
FspBI CTAG 6 cut(s) 35, 86, 161, 200, 423, 456
GlaI GCGC 1 cut(s) 321
GluI GCNGC 2 cut(s) 295, 476
GsaI CCCAGC 1 cut(s) 392
HaeII RGCGCY 1 cut(s) 323
HaeIII GGCC 3 cut(s) 33, 220, 334
HapII CCGG 4 cut(s) 217, 471, 503, 567
HgaI GACGC 1 cut(s) 548
HhaI GCGC 1 cut(s) 322
Hin1II CATG 4 cut(s) 18, 136, 226, 370
Hin6I GCGC 1 cut(s) 320
HinP1I GCGC 1 cut(s) 320
HindIII AAGCTT 1 cut(s) 173
HinfI GANTC 2 cut(s) 289, 305
HpaII CCGG 4 cut(s) 217, 471, 503, 567
HphI GGTGA 2 cut(s) 406, 497
Hpy166II GTNNAC 6 cut(s) 52, 106, 197, 288, 511, 564
Hpy188III TCNNGA 1 cut(s) 247
Hpy8I GTNNAC 6 cut(s) 52, 106, 197, 288, 511, 564
HpyCH4III ACNGT 2 cut(s) 485, 491
HpyCH4IV ACGT 1 cut(s) 284
HpyF3I CTNAG 1 cut(s) 270
HpySE526I ACGT 1 cut(s) 284
Hsp92II CATG 4 cut(s) 18, 136, 226, 370
HspAI GCGC 1 cut(s) 320
Kzo9I GATC 5 cut(s) 138, 165, 243, 514, 579
LmnI GCTCC 1 cut(s) 362
Lsp1109I GCAGC 1 cut(s) 487
MaeI CTAG 6 cut(s) 35, 86, 161, 200, 423, 456
MaeII ACGT 1 cut(s) 284
MaeIII GTNAC 3 cut(s) 394, 485, 554
MalI GATC 5 cut(s) 140, 167, 245, 516, 581
MboI GATC 5 cut(s) 138, 165, 243, 514, 579
MflI RGATCY 2 cut(s) 138, 165
MhlI GDGCHC 1 cut(s) 42
MluCI AATT 1 cut(s) 340
MlyI GAGTC 1 cut(s) 283
MspA1I CMGCKG 1 cut(s) 449
MspI CCGG 4 cut(s) 217, 471, 503, 567
MspR9I CCNGG 3 cut(s) 217, 229, 472
MvaI CCWGG 1 cut(s) 229
NciI CCSGG 2 cut(s) 217, 472
NdeII GATC 5 cut(s) 138, 165, 243, 514, 579
NlaIII CATG 4 cut(s) 18, 136, 226, 370
NlaIV GGNNCC 1 cut(s) 364
NmeAIII GCCGAG 1 cut(s) 354
NmuCI GTSAC 2 cut(s) 394, 485
NspV TTCGAA 1 cut(s) 520
PcsI WCGNNNNNNNCGW 1 cut(s) 546
PfeI GAWTC 1 cut(s) 305
Pfl23II CGTACG 1 cut(s) 277
PflFI GACNNNGTC 1 cut(s) 101
PkrI GCNGC 2 cut(s) 296, 477
PleI GAGTC 1 cut(s) 283
PpsI GAGTC 1 cut(s) 283
Psp6I CCWGG 1 cut(s) 227
PspEI GGTNACC 1 cut(s) 394
PspFI CCCAGC 1 cut(s) 388
PspGI CCWGG 1 cut(s) 227
PspLI CGTACG 1 cut(s) 277
PspN4I GGNNCC 1 cut(s) 364
PspPI GGNCC 1 cut(s) 219
PsuI RGATCY 2 cut(s) 138, 165
PsyI GACNNNGTC 1 cut(s) 101
PvuII CAGCTG 1 cut(s) 449
RsaI GTAC 7 cut(s) 53, 279, 408, 414, 445, 454, 512
RsaNI GTAC 7 cut(s) 52, 278, 407, 413, 444, 453, 511
SatI GCNGC 2 cut(s) 295, 476
Sau3AI GATC 5 cut(s) 138, 165, 243, 514, 579
Sau96I GGNCC 1 cut(s) 219
SchI GAGTC 1 cut(s) 283
ScrFI CCNGG 3 cut(s) 217, 229, 472
SduI GDGCHC 1 cut(s) 42
SfuI TTCGAA 1 cut(s) 520
SmlI CTYRAG 1 cut(s) 170
SmoI CTYRAG 1 cut(s) 170
SpeI ACTAGT 1 cut(s) 455
Sse9I AATT 1 cut(s) 340
SsiI CCGC 1 cut(s) 295
SspMI CTAG 6 cut(s) 35, 86, 161, 200, 423, 456
StyD4I CCNGG 3 cut(s) 215, 227, 470
TaaI ACNGT 2 cut(s) 485, 491
TaiI ACGT 1 cut(s) 287
TaqI TCGA 1 cut(s) 520
TasI AATT 1 cut(s) 340
TatI WGTACW 2 cut(s) 406, 412
TauI GCSGC 1 cut(s) 297
TfiI GAWTC 1 cut(s) 305
TscAI CASTG 1 cut(s) 304
TseFI GTSAC 2 cut(s) 394, 485
TseI GCWGC 1 cut(s) 475
Tsp45I GTSAC 2 cut(s) 394, 485
TspDTI ATGAA 1 cut(s) 386
TspGWI ACGGA 1 cut(s) 295
TspRI CASTG 1 cut(s) 304
Tth111I GACNNNGTC 1 cut(s) 101
XcmI CCANNNNNNNNNTGG 1 cut(s) 235
XmiI GTMKAC 3 cut(s) 105, 196, 563
XspI CTAG 6 cut(s) 35, 86, 161, 200, 423, 456
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.