MD17G1217700.v1.1

Sterile alpha motif (SAM) domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
OG0014165
Physical Location & Seq
Forward (+)
26448278 .. 26448883
606 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1217700.v1.1.491

Sequence Viewer

Length: 606 bp
ATGGATTGGTTCTCATGGCTGTCGAAAACCGGCCTAGAGCCGTCGCTTGTGTACGAGTACGGCCTCGCTTTTGCTCACAATGAGCTAGAAGAAGAGGACATAATGTACTTTAACCATGAGTTTCTTCAAAGCATGGGAATTTCCATAGCCAAACACAGGCTAGAGATCCTCAAGCTTGCAAGAAAAGCAAAGGGCATGAACACTCCGCGTCCGATGCGAAAGCTTTTGGTGGCAATCAAGAGGACTAAGAGGTGTTTATCCGAGTACATACGCACGTGGATTCACCGGGATCGGGACTCAACGGCGCTGGCGCTCGTGACAAGGCCAAGCAATTACAGGACAAGGTTTAGAGGAGCCATGCTGAAGAGGAACAAGAAGTTGATCACGGCCAAGCAAGGCAGCCGGTTGCTGCTCACAAATGGGAGTCCTCTGGTGGTTTCCGCCGGACCCCATCATGTCGATAGCTTTTCGAGTCCGGTGGTGTATGATTTACGGAAGGAGGAAAAGATGATGGATGGTGATGAAGCAAATGATGATGGTTATTGGTGTACTGGAGTTGAAGAGTTCAGGTGGGATACTATGTTCCAGGACTTGAAACCTACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SAM_2

Protein Analysis

202

Amino Acids

23.4

Weight (kDa)

9.3

Isoelectric Point (pI)

43.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014165)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G15760 AT1G80520
fragaria_vesca FvH4_6g29130
malus_domestica MD00G1182100.v1.1 MD17G1217700.v1.1
prunus_persica Prupe.3G093400_v2.0.a1
pyrus_communis pycom17g22200
rosa_chinensis RchiOBHm_Chr2g0134301
rosa_laevigata RLG00000019385
rosa_multiflora Rmu_sc0014586.1_g000006
rosa_roxburghii Rroxscaffold_2G00110350
rosa_rugosa Rorug02G0316000
rosa_samantha Rh2AG368700 Rh2BG374700 Rh2CG352400 Rh2DG392000
rosa_wichuraiana Rw2G030040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 208
AciI CCGC 2 cut(s) 206, 441
AclWI GGATC 2 cut(s) 160, 297
AcoI YGGCCR 1 cut(s) 387
AcsI RAATTY 1 cut(s) 138
AcuI CTGAAG 1 cut(s) 383
AcvI CACGTG 1 cut(s) 276
AfaI GTAC 5 cut(s) 53, 59, 107, 266, 550
AfiI CCNNNNNNNGG 2 cut(s) 156, 292
AgsI TTSAA 3 cut(s) 128, 560, 595
AjnI CCWGG 1 cut(s) 585
AloI GAACNNNNNNTCC 2 cut(s) 566, 598
AluBI AGCT 4 cut(s) 85, 175, 223, 465
AluI AGCT 4 cut(s) 85, 175, 223, 465
AlwI GGATC 2 cut(s) 160, 297
AoxI GGCC 4 cut(s) 31, 61, 323, 387
ApeKI GCWGC 2 cut(s) 399, 409
ApoI RAATTY 1 cut(s) 138
AspLEI GCGC 2 cut(s) 307, 313
AspS9I GGNCC 1 cut(s) 446
AsuC2I CCSGG 1 cut(s) 287
AsuHPI GGTGA 2 cut(s) 275, 530
AvaII GGWCC 1 cut(s) 446
BauI CACGAG 1 cut(s) 314
BbrPI CACGTG 1 cut(s) 276
BbvI GCAGC 2 cut(s) 396, 411
BccI CCATC 4 cut(s) 459, 505, 509, 530
BceAI ACGGC 4 cut(s) 25, 76, 318, 402
BciT130I CCWGG 1 cut(s) 587
BciVI GTATCC 1 cut(s) 568
BclI TGATCA 1 cut(s) 381
BcnI CCSGG 1 cut(s) 287
BfaI CTAG 3 cut(s) 35, 86, 161
BfoI RGCGCY 2 cut(s) 308, 314
BfuI GTATCC 1 cut(s) 568
BisI GCNGC 2 cut(s) 400, 410
BlsI GCNGC 2 cut(s) 401, 411
Bme1390I CCNGG 2 cut(s) 287, 587
Bme18I GGWCC 1 cut(s) 446
BmgT120I GGNCC 1 cut(s) 446
BmiI GGNNCC 2 cut(s) 355, 448
BmrFI CCNGG 2 cut(s) 287, 587
BmsI GCATC 1 cut(s) 204
BpmI CTGGAG 1 cut(s) 573
BpuEI CTTGAG 1 cut(s) 155
BpuMI CCSGG 1 cut(s) 287
BsaAI YACGTR 1 cut(s) 276
BsaWI WCCGGW 1 cut(s) 475
Bsc4I CCNNNNNNNGG 2 cut(s) 156, 292
Bse118I RCCGGY 2 cut(s) 29, 402
Bse1I ACTGG 1 cut(s) 556
BseBI CCWGG 1 cut(s) 587
BseGI GGATG 1 cut(s) 520
BseLI CCNNNNNNNGG 2 cut(s) 156, 292
BseNI ACTGG 1 cut(s) 556
BseRI GAGGAG 1 cut(s) 366
BseXI GCAGC 2 cut(s) 396, 411
Bsh1236I CGCG 1 cut(s) 208
BshFI GGCC 4 cut(s) 33, 63, 325, 389
BsiSI CCGG 5 cut(s) 30, 286, 403, 444, 476
BslFI GGGAC 1 cut(s) 308
BslI CCNNNNNNNGG 2 cut(s) 156, 292
BsmFI GGGAC 1 cut(s) 308
BsnI GGCC 4 cut(s) 33, 63, 325, 389
Bsp143I GATC 3 cut(s) 165, 289, 381
BspACI CCGC 2 cut(s) 206, 441
BspANI GGCC 4 cut(s) 33, 63, 325, 389
BspFNI CGCG 1 cut(s) 208
BspLI GGNNCC 2 cut(s) 355, 448
BspPI GGATC 2 cut(s) 160, 297
BsrFI RCCGGY 2 cut(s) 29, 402
BsrI ACTGG 1 cut(s) 556
BssAI RCCGGY 2 cut(s) 29, 402
BssMI GATC 3 cut(s) 165, 289, 381
BssSI CACGAG 1 cut(s) 314
Bst2BI CACGAG 1 cut(s) 314
Bst2UI CCWGG 1 cut(s) 587
Bst6I CTCTTC 3 cut(s) 87, 359, 555
BstBAI YACGTR 1 cut(s) 276
BstC8I GCNNGC 2 cut(s) 177, 309
BstDEI CTNAG 1 cut(s) 246
BstF5I GGATG 1 cut(s) 520
BstFNI CGCG 1 cut(s) 208
BstH2I RGCGCY 2 cut(s) 308, 314
BstHHI GCGC 2 cut(s) 307, 313
BstKTI GATC 3 cut(s) 168, 292, 384
BstMBI GATC 3 cut(s) 165, 289, 381
BstMWI GCNNNNNNNGC 2 cut(s) 185, 214
BstNI CCWGG 1 cut(s) 587
BstSCI CCNGG 2 cut(s) 285, 585
BstUI CGCG 1 cut(s) 208
BstV1I GCAGC 2 cut(s) 396, 411
BstX2I RGATCY 1 cut(s) 165
BstYI RGATCY 1 cut(s) 165
BsuI GTATCC 1 cut(s) 568
BsuRI GGCC 4 cut(s) 33, 63, 325, 389
BtsCI GGATG 1 cut(s) 520
Cac8I GCNNGC 2 cut(s) 177, 309
CfoI GCGC 2 cut(s) 307, 313
Cfr10I RCCGGY 2 cut(s) 29, 402
Cfr13I GGNCC 1 cut(s) 446
CseI GACGC 1 cut(s) 197
Csp6I GTAC 5 cut(s) 52, 58, 106, 265, 549
CviAII CATG 6 cut(s) 15, 116, 133, 196, 358, 455
CviQI GTAC 5 cut(s) 52, 58, 106, 265, 549
DdeI CTNAG 1 cut(s) 246
DpnI GATC 3 cut(s) 167, 291, 383
DpnII GATC 3 cut(s) 165, 289, 381
EaeI YGGCCR 1 cut(s) 387
Eam1104I CTCTTC 3 cut(s) 87, 359, 555
EarI CTCTTC 3 cut(s) 87, 359, 555
EciI GGCGGA 1 cut(s) 430
Eco47I GGWCC 1 cut(s) 446
Eco57I CTGAAG 1 cut(s) 383
Eco72I CACGTG 1 cut(s) 276
EcoRII CCWGG 1 cut(s) 585
FaeI CATG 6 cut(s) 18, 119, 136, 199, 361, 458
FaqI GGGAC 1 cut(s) 308
FatI CATG 6 cut(s) 14, 115, 132, 195, 357, 454
FbaI TGATCA 1 cut(s) 381
Fnu4HI GCNGC 2 cut(s) 400, 410
FokI GGATG 1 cut(s) 527
Fsp4HI GCNGC 2 cut(s) 400, 410
FspBI CTAG 3 cut(s) 35, 86, 161
GlaI GCGC 2 cut(s) 306, 312
GluI GCNGC 2 cut(s) 400, 410
GsuI CTGGAG 1 cut(s) 573
HaeII RGCGCY 2 cut(s) 308, 314
HaeIII GGCC 4 cut(s) 33, 63, 325, 389
HapII CCGG 5 cut(s) 30, 286, 403, 444, 476
HgaI GACGC 1 cut(s) 197
HhaI GCGC 2 cut(s) 307, 313
Hin1II CATG 6 cut(s) 18, 119, 136, 199, 361, 458
Hin6I GCGC 2 cut(s) 305, 311
HinP1I GCGC 2 cut(s) 305, 311
HindIII AAGCTT 2 cut(s) 173, 221
HinfI GANTC 4 cut(s) 280, 296, 424, 472
HpaII CCGG 5 cut(s) 30, 286, 403, 444, 476
HphI GGTGA 2 cut(s) 275, 530
Hpy166II GTNNAC 2 cut(s) 52, 549
Hpy188I TCNGA 2 cut(s) 213, 262
Hpy188III TCNNGA 3 cut(s) 238, 293, 316
Hpy8I GTNNAC 2 cut(s) 52, 549
Hpy99I CGWCG 1 cut(s) 46
HpyAV CCTTC 1 cut(s) 490
HpyCH4IV ACGT 1 cut(s) 275
HpyCH4V TGCA 1 cut(s) 179
HpyF10VI GCNNNNNNNGC 2 cut(s) 185, 214
HpyF3I CTNAG 1 cut(s) 246
HpySE526I ACGT 1 cut(s) 275
Hsp92II CATG 6 cut(s) 18, 119, 136, 199, 361, 458
HspAI GCGC 2 cut(s) 305, 311
Ksp22I TGATCA 1 cut(s) 381
Kzo9I GATC 3 cut(s) 165, 289, 381
LmnI GCTCC 1 cut(s) 353
Lsp1109I GCAGC 2 cut(s) 396, 411
LweI GCATC 1 cut(s) 204
MaeI CTAG 3 cut(s) 35, 86, 161
MaeII ACGT 1 cut(s) 275
MaeIII GTNAC 1 cut(s) 316
MalI GATC 3 cut(s) 167, 291, 383
MboI GATC 3 cut(s) 165, 289, 381
MboII GAAGA 5 cut(s) 101, 104, 116, 376, 572
MflI RGATCY 1 cut(s) 165
MluCI AATT 2 cut(s) 138, 331
MlyI GAGTC 3 cut(s) 290, 433, 481
MnlI CCTC 9 cut(s) 74, 88, 179, 234, 243, 344, 360, 438, 493
MseI TTAA 1 cut(s) 111
MspI CCGG 5 cut(s) 30, 286, 403, 444, 476
MspR9I CCNGG 2 cut(s) 287, 587
MvaI CCWGG 1 cut(s) 587
MvnI CGCG 1 cut(s) 208
MwoI GCNNNNNNNGC 2 cut(s) 185, 214
NciI CCSGG 1 cut(s) 287
NdeII GATC 3 cut(s) 165, 289, 381
NlaIII CATG 6 cut(s) 18, 119, 136, 199, 361, 458
NlaIV GGNNCC 2 cut(s) 355, 448
NmuCI GTSAC 1 cut(s) 316
PfeI GAWTC 1 cut(s) 280
PfoI TCCNGGA 1 cut(s) 585
PkrI GCNGC 2 cut(s) 401, 411
PleI GAGTC 3 cut(s) 290, 432, 480
PmaCI CACGTG 1 cut(s) 276
PmlI CACGTG 1 cut(s) 276
PpsI GAGTC 3 cut(s) 290, 432, 480
Ppu21I YACGTR 1 cut(s) 276
Psp6I CCWGG 1 cut(s) 585
PspCI CACGTG 1 cut(s) 276
PspGI CCWGG 1 cut(s) 585
PspN4I GGNNCC 2 cut(s) 355, 448
PspPI GGNCC 1 cut(s) 446
PsuI RGATCY 1 cut(s) 165
RsaI GTAC 5 cut(s) 53, 59, 107, 266, 550
RsaNI GTAC 5 cut(s) 52, 58, 106, 265, 549
SaqAI TTAA 1 cut(s) 111
SatI GCNGC 2 cut(s) 400, 410
Sau3AI GATC 3 cut(s) 165, 289, 381
Sau96I GGNCC 1 cut(s) 446
SchI GAGTC 3 cut(s) 290, 433, 481
ScrFI CCNGG 2 cut(s) 287, 587
SetI ASST 9 cut(s) 87, 177, 225, 254, 278, 347, 467, 572, 601
SfaNI GCATC 1 cut(s) 204
SinI GGWCC 1 cut(s) 446
SmlI CTYRAG 1 cut(s) 170
SmoI CTYRAG 1 cut(s) 170
Sse9I AATT 2 cut(s) 138, 331
SsiI CCGC 2 cut(s) 206, 441
SspMI CTAG 3 cut(s) 35, 86, 161
StyD4I CCNGG 2 cut(s) 285, 585
TaiI ACGT 1 cut(s) 278
TaqI TCGA 3 cut(s) 23, 459, 470
TasI AATT 2 cut(s) 138, 331
TatI WGTACW 3 cut(s) 105, 264, 548
TfiI GAWTC 1 cut(s) 280
Tru1I TTAA 1 cut(s) 111
Tru9I TTAA 1 cut(s) 111
TseFI GTSAC 1 cut(s) 316
TseI GCWGC 2 cut(s) 399, 409
Tsp45I GTSAC 1 cut(s) 316
TspDTI ATGAA 2 cut(s) 212, 537
TspGWI ACGGA 1 cut(s) 508
VpaK11BI GGWCC 1 cut(s) 446
XapI RAATTY 1 cut(s) 138
XspI CTAG 3 cut(s) 35, 86, 161
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.