Rh2CG352400

Sterile alpha motif (SAM) domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0014165
Physical Location & Seq
Reverse (-)
47716235 .. 47716852
618 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG352400.1

Sequence Viewer

Length: 618 bp
ATGGATTGGTTCTCATGGCTATCCAAAACCGGCCTAGAGCCTTCGCTTGTGTACGAGTATGGTCTTTGCTTTGCTCACAATGAGCTCGAGGAAGAAGACATTCTCTACTTCAACCACGAGTTTCTTCAAAGCATGGGAATCTCCATAGCCAAACACAGGCTAGAGATCCTCAAGCTTGCTAGAAAAGAAAAGGGTAGACTAGCAAGTAGTGCTCCGCGGCCCATGACGAGGCTTATAGTGGCGATCAAGAAGACCAAGAGGTGTTTTTCTGAGTTCGTACGGACGTGGACTCGCCGCAGTGAGGATTCTTCAGCTCTAGCACTCGTTCCGAGGCCAAGTAATTACAAGTCGAGGTTTAGAGGAGCCATGCTGAAGAGGAACAAGAAGTTGGGGGCGACCAAACAAGTACAAGGCACCAGGTTGTTGCTCACAAATGGTACAGCTGCTAATAGTCCTGTGGTGGTTTCCGGGCAGCCTCACGGCGACGGTTTTTCGAGTCCGGTGGTGTACGATGTTCGAAAGGAGGAGAAGATGGACGCAGATGATGACGGGTACTGGTCTACCGGGGTTGAAGAGATCAGGTGGGATACCATGTTCCAGGACTTGAAACCTACCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SAM_2

Protein Analysis

205

Amino Acids

23.44

Weight (kDa)

9.3

Isoelectric Point (pI)

49.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014165)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G15760 AT1G80520
fragaria_vesca FvH4_6g29130
malus_domestica MD00G1182100.v1.1 MD17G1217700.v1.1
prunus_persica Prupe.3G093400_v2.0.a1
pyrus_communis pycom17g22200
rosa_chinensis RchiOBHm_Chr2g0134301
rosa_laevigata RLG00000019385
rosa_multiflora Rmu_sc0014586.1_g000006
rosa_roxburghii Rroxscaffold_2G00110350
rosa_rugosa Rorug02G0316000
rosa_samantha Rh2AG368700 Rh2BG374700 Rh2CG352400 Rh2DG392000
rosa_wichuraiana Rw2G030040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 413
AccI GTMKAC 2 cut(s) 196, 560
AccII CGCG 1 cut(s) 217
AciI CCGC 3 cut(s) 215, 217, 295
AclWI GGATC 1 cut(s) 160
AcuI CTGAAG 2 cut(s) 294, 392
AfaI GTAC 6 cut(s) 53, 279, 408, 439, 509, 554
AfiI CCNNNNNNNGG 3 cut(s) 156, 228, 301
AgsI TTSAA 4 cut(s) 112, 128, 572, 607
AjiI CACGTC 1 cut(s) 285
AjnI CCWGG 2 cut(s) 416, 597
AjuI GAANNNNNNNTTGG 2 cut(s) 371, 403
AloI GAACNNNNNNTCC 2 cut(s) 578, 610
AluBI AGCT 4 cut(s) 85, 175, 314, 443
AluI AGCT 4 cut(s) 85, 175, 314, 443
Alw21I GWGCWC 2 cut(s) 87, 214
AlwI GGATC 1 cut(s) 160
Ama87I CYCGRG 1 cut(s) 86
AoxI GGCC 3 cut(s) 31, 218, 332
ApeKI GCWGC 2 cut(s) 443, 472
Asp700I GAANNNNTTC 1 cut(s) 99
AspS9I GGNCC 1 cut(s) 219
AsuC2I CCSGG 2 cut(s) 469, 565
AsuII TTCGAA 1 cut(s) 517
AvaI CYCGRG 1 cut(s) 86
BanI GGYRCC 1 cut(s) 413
BanII GRGCYC 1 cut(s) 87
BauI CACGAG 1 cut(s) 116
BbsI GAAGAC 2 cut(s) 102, 257
Bbv12I GWGCWC 2 cut(s) 87, 214
BbvI GCAGC 2 cut(s) 430, 484
BccI CCATC 1 cut(s) 526
BceAI ACGGC 1 cut(s) 496
BciT130I CCWGG 2 cut(s) 418, 599
BciVI GTATCC 1 cut(s) 580
BcnI CCSGG 2 cut(s) 469, 565
BfaI CTAG 5 cut(s) 35, 161, 180, 200, 317
BfuI GTATCC 1 cut(s) 580
BisI GCNGC 4 cut(s) 218, 295, 444, 473
BlsI GCNGC 4 cut(s) 219, 296, 445, 474
Bme1390I CCNGG 4 cut(s) 418, 469, 565, 599
BmeT110I CYCGRG 1 cut(s) 86
BmgBI CACGTC 1 cut(s) 285
BmgT120I GGNCC 1 cut(s) 219
BmiI GGNNCC 2 cut(s) 364, 415
BmrFI CCNGG 4 cut(s) 418, 469, 565, 599
BpiI GAAGAC 2 cut(s) 102, 257
Bpu14I TTCGAA 1 cut(s) 517
BpuEI CTTGAG 1 cut(s) 155
BpuMI CCSGG 2 cut(s) 469, 565
BsaJI CCNNGG 3 cut(s) 215, 329, 564
BsaWI WCCGGW 1 cut(s) 499
Bsc4I CCNNNNNNNGG 3 cut(s) 156, 228, 301
Bse118I RCCGGY 1 cut(s) 29
Bse1I ACTGG 1 cut(s) 560
BseBI CCWGG 2 cut(s) 418, 599
BseDI CCNNGG 3 cut(s) 215, 329, 564
BseLI CCNNNNNNNGG 3 cut(s) 156, 228, 301
BseMII CTCAG 1 cut(s) 261
BseNI ACTGG 1 cut(s) 560
BseRI GAGGAG 2 cut(s) 375, 539
BseXI GCAGC 2 cut(s) 430, 484
Bsh1236I CGCG 1 cut(s) 217
BshFI GGCC 3 cut(s) 33, 220, 334
BshNI GGYRCC 1 cut(s) 413
BsiHKAI GWGCWC 2 cut(s) 87, 214
BsiHKCI CYCGRG 1 cut(s) 86
BsiSI CCGG 4 cut(s) 30, 468, 500, 564
BsiWI CGTACG 1 cut(s) 277
BslI CCNNNNNNNGG 3 cut(s) 156, 228, 301
BsnI GGCC 3 cut(s) 33, 220, 334
BsoBI CYCGRG 1 cut(s) 86
Bsp119I TTCGAA 1 cut(s) 517
Bsp1286I GDGCHC 2 cut(s) 87, 214
Bsp143I GATC 3 cut(s) 165, 243, 576
BspACI CCGC 3 cut(s) 215, 217, 295
BspANI GGCC 3 cut(s) 33, 220, 334
BspCNI CTCAG 1 cut(s) 262
BspFNI CGCG 1 cut(s) 217
BspLI GGNNCC 2 cut(s) 364, 415
BspPI GGATC 1 cut(s) 160
BspT104I TTCGAA 1 cut(s) 517
BspT107I GGYRCC 1 cut(s) 413
BsrFI RCCGGY 1 cut(s) 29
BsrI ACTGG 1 cut(s) 560
BssAI RCCGGY 1 cut(s) 29
BssECI CCNNGG 3 cut(s) 215, 329, 564
BssMI GATC 3 cut(s) 165, 243, 576
BssSI CACGAG 1 cut(s) 116
Bst2BI CACGAG 1 cut(s) 116
Bst2UI CCWGG 2 cut(s) 418, 599
Bst4CI ACNGT 1 cut(s) 488
Bst6I CTCTTC 2 cut(s) 368, 567
BstAPI GCANNNNNTGC 1 cut(s) 209
BstBI TTCGAA 1 cut(s) 517
BstC8I GCNNGC 1 cut(s) 177
BstDEI CTNAG 1 cut(s) 270
BstDSI CCRYGG 1 cut(s) 215
BstFNI CGCG 1 cut(s) 217
BstKTI GATC 3 cut(s) 168, 246, 579
BstMBI GATC 3 cut(s) 165, 243, 576
BstMWI GCNNNNNNNGC 1 cut(s) 209
BstNI CCWGG 2 cut(s) 418, 599
BstSCI CCNGG 4 cut(s) 416, 467, 563, 597
BstUI CGCG 1 cut(s) 217
BstV1I GCAGC 2 cut(s) 430, 484
BstV2I GAAGAC 2 cut(s) 102, 257
BstX2I RGATCY 1 cut(s) 165
BstYI RGATCY 1 cut(s) 165
BsuI GTATCC 1 cut(s) 580
BsuRI GGCC 3 cut(s) 33, 220, 334
BtgI CCRYGG 1 cut(s) 215
BtrI CACGTC 1 cut(s) 285
BtsI GCAGTG 1 cut(s) 304
BtsIMutI CAGTG 1 cut(s) 304
Cac8I GCNNGC 1 cut(s) 177
Cfr10I RCCGGY 1 cut(s) 29
Cfr13I GGNCC 1 cut(s) 219
Cfr42I CCGCGG 1 cut(s) 218
CseI GACGC 1 cut(s) 545
CsiI ACCWGGT 1 cut(s) 416
Csp6I GTAC 6 cut(s) 52, 278, 407, 438, 508, 553
CviAII CATG 5 cut(s) 15, 133, 223, 367, 592
CviQI GTAC 6 cut(s) 52, 278, 407, 438, 508, 553
DdeI CTNAG 1 cut(s) 270
DpnI GATC 3 cut(s) 167, 245, 578
DpnII GATC 3 cut(s) 165, 243, 576
Eam1104I CTCTTC 2 cut(s) 368, 567
EarI CTCTTC 2 cut(s) 368, 567
Ecl136II GAGCTC 1 cut(s) 85
Eco24I GRGCYC 1 cut(s) 87
Eco53kI GAGCTC 1 cut(s) 85
Eco57I CTGAAG 2 cut(s) 294, 392
Eco88I CYCGRG 1 cut(s) 86
EcoICRI GAGCTC 1 cut(s) 85
EcoRII CCWGG 2 cut(s) 416, 597
EcoT38I GRGCYC 1 cut(s) 87
FaeI CATG 5 cut(s) 18, 136, 226, 370, 595
FaiI YATR 8 cut(s) 16, 60, 134, 146, 224, 236, 368, 593
FatI CATG 5 cut(s) 14, 132, 222, 366, 591
FblI GTMKAC 2 cut(s) 196, 560
Fnu4HI GCNGC 4 cut(s) 218, 295, 444, 473
FriOI GRGCYC 1 cut(s) 87
Fsp4HI GCNGC 4 cut(s) 218, 295, 444, 473
FspBI CTAG 5 cut(s) 35, 161, 180, 200, 317
GluI GCNGC 4 cut(s) 218, 295, 444, 473
HaeIII GGCC 3 cut(s) 33, 220, 334
HapII CCGG 4 cut(s) 30, 468, 500, 564
HgaI GACGC 1 cut(s) 545
Hin1II CATG 5 cut(s) 18, 136, 226, 370, 595
HindIII AAGCTT 1 cut(s) 173
HinfI GANTC 4 cut(s) 138, 289, 305, 496
HpaII CCGG 4 cut(s) 30, 468, 500, 564
Hpy166II GTNNAC 5 cut(s) 52, 197, 288, 508, 561
Hpy188I TCNGA 2 cut(s) 271, 330
Hpy188III TCNNGA 1 cut(s) 247
Hpy8I GTNNAC 5 cut(s) 52, 197, 288, 508, 561
Hpy99I CGWCG 1 cut(s) 488
HpyAV CCTTC 1 cut(s) 51
HpyCH4III ACNGT 1 cut(s) 488
HpyCH4IV ACGT 1 cut(s) 284
HpyF10VI GCNNNNNNNGC 1 cut(s) 209
HpyF3I CTNAG 1 cut(s) 270
HpySE526I ACGT 1 cut(s) 284
Hsp92II CATG 5 cut(s) 18, 136, 226, 370, 595
KspI CCGCGG 1 cut(s) 218
Kzo9I GATC 3 cut(s) 165, 243, 576
LmnI GCTCC 2 cut(s) 217, 362
Lsp1109I GCAGC 2 cut(s) 430, 484
MabI ACCWGGT 1 cut(s) 416
MaeI CTAG 5 cut(s) 35, 161, 180, 200, 317
MaeII ACGT 1 cut(s) 284
MalI GATC 3 cut(s) 167, 245, 578
MboI GATC 3 cut(s) 165, 243, 576
MboII GAAGA 8 cut(s) 104, 107, 116, 262, 300, 385, 541, 584
MflI RGATCY 1 cut(s) 165
MhlI GDGCHC 2 cut(s) 87, 214
MluCI AATT 1 cut(s) 340
MlyI GAGTC 2 cut(s) 283, 505
MroXI GAANNNNTTC 1 cut(s) 99
MspA1I CMGCKG 2 cut(s) 217, 443
MspI CCGG 4 cut(s) 30, 468, 500, 564
MspR9I CCNGG 4 cut(s) 418, 469, 565, 599
MvaI CCWGG 2 cut(s) 418, 599
MvnI CGCG 1 cut(s) 217
MwoI GCNNNNNNNGC 1 cut(s) 209
NciI CCSGG 2 cut(s) 469, 565
NdeII GATC 3 cut(s) 165, 243, 576
NlaIII CATG 5 cut(s) 18, 136, 226, 370, 595
NlaIV GGNNCC 2 cut(s) 364, 415
NspV TTCGAA 1 cut(s) 517
PaeR7I CTCGAG 1 cut(s) 86
PdmI GAANNNNTTC 1 cut(s) 99
PfeI GAWTC 2 cut(s) 138, 305
Pfl23II CGTACG 1 cut(s) 277
PfoI TCCNGGA 1 cut(s) 597
PkrI GCNGC 4 cut(s) 219, 296, 445, 474
PleI GAGTC 2 cut(s) 283, 504
PpsI GAGTC 2 cut(s) 283, 504
Psp124BI GAGCTC 1 cut(s) 87
Psp6I CCWGG 2 cut(s) 416, 597
PspGI CCWGG 2 cut(s) 416, 597
PspLI CGTACG 1 cut(s) 277
PspN4I GGNNCC 2 cut(s) 364, 415
PspPI GGNCC 1 cut(s) 219
PspXI VCTCGAGB 1 cut(s) 86
PsuI RGATCY 1 cut(s) 165
PvuII CAGCTG 1 cut(s) 443
RsaI GTAC 6 cut(s) 53, 279, 408, 439, 509, 554
RsaNI GTAC 6 cut(s) 52, 278, 407, 438, 508, 553
SacI GAGCTC 1 cut(s) 87
SacII CCGCGG 1 cut(s) 218
SatI GCNGC 4 cut(s) 218, 295, 444, 473
Sau3AI GATC 3 cut(s) 165, 243, 576
Sau96I GGNCC 1 cut(s) 219
SchI GAGTC 2 cut(s) 283, 505
ScrFI CCNGG 4 cut(s) 418, 469, 565, 599
SduI GDGCHC 2 cut(s) 87, 214
SexAI ACCWGGT 1 cut(s) 416
Sfr274I CTCGAG 1 cut(s) 86
Sfr303I CCGCGG 1 cut(s) 218
SfuI TTCGAA 1 cut(s) 517
SgrBI CCGCGG 1 cut(s) 218
SlaI CTCGAG 1 cut(s) 86
SmlI CTYRAG 2 cut(s) 86, 170
SmoI CTYRAG 2 cut(s) 86, 170
Sse9I AATT 1 cut(s) 340
SsiI CCGC 3 cut(s) 215, 217, 295
SspMI CTAG 5 cut(s) 35, 161, 180, 200, 317
SstI GAGCTC 1 cut(s) 87
StyD4I CCNGG 4 cut(s) 416, 467, 563, 597
TaaI ACNGT 1 cut(s) 488
TaiI ACGT 1 cut(s) 287
TaqI TCGA 4 cut(s) 87, 350, 494, 517
TasI AATT 1 cut(s) 340
TatI WGTACW 1 cut(s) 406
TauI GCSGC 2 cut(s) 220, 297
TfiI GAWTC 2 cut(s) 138, 305
TscAI CASTG 1 cut(s) 304
TseI GCWGC 2 cut(s) 443, 472
TspGWI ACGGA 1 cut(s) 295
TspRI CASTG 1 cut(s) 304
XhoI CTCGAG 1 cut(s) 86
XmiI GTMKAC 2 cut(s) 196, 560
XmnI GAANNNNTTC 1 cut(s) 99
XspI CTAG 5 cut(s) 35, 161, 180, 200, 317
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.