AT1G80520

BEST Arabidopsis thaliana protein match is

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0014165
Physical Location & Seq
Forward (+)
30276116 .. 30277278
1163 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G80520.1

Sequence Viewer

Length: 579 bp
ATGGATTGGTTCTCATGGCTCTCGAGAACAAATCTCGAAGCTTCTCTCATCTACGAGTACGGTCTCTCTTTCTCAAACAACGAGCTCGAGTACGAAGACATTGCTTACTTCAACCACGAATTTCTCCAGAGCATGGGTATCTCAATCGCTAAGCACCGCCTCGAGATCCTGAAGCTTGCTCGGCGTGATCGGAAACCTTCACCGCTCACCGCTCGTTCGATTTTCAGAGTCTTGATCGCCATCAAGAAGACCGGGAAATGCTTCTCCGAGCATGTTAGGGCCTGGATCCGACGAGAGGAATCGTCCCGGGCTCTGGTCGTTGTGTCGAGAAGCACGAGTAGCAGCGGGAACGGGAGATGGAAAAGTGCGAGGAAGAAGAGATTGGTGATGCCGAGTAACGGAAATGGCGTCAAGGAAGAGAGACTCCTGTTGACGAATGGAACTCCTTGTAGGCTCGATAGCTTCTCCAATCCAAAGGTTTCTTCAGGTTATGAAGATGATGATAATCATTGGGGAAACAAAGATGTAGAAGAGAAGATTAAGTGGGATTCCATGTTTCAGAACCTTAAACCTACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SAM_2

Protein Analysis

192

Amino Acids

22.23

Weight (kDa)

9.56

Isoelectric Point (pI)

41.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014165)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G15760 AT1G80520
fragaria_vesca FvH4_6g29130
malus_domestica MD00G1182100.v1.1 MD17G1217700.v1.1
prunus_persica Prupe.3G093400_v2.0.a1
pyrus_communis pycom17g22200
rosa_chinensis RchiOBHm_Chr2g0134301
rosa_laevigata RLG00000019385
rosa_multiflora Rmu_sc0014586.1_g000006
rosa_roxburghii Rroxscaffold_2G00110350
rosa_rugosa Rorug02G0316000
rosa_samantha Rh2AG368700 Rh2BG374700 Rh2CG352400 Rh2DG392000
rosa_wichuraiana Rw2G030040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 133
AccBSI CCGCTC 2 cut(s) 205, 212
AciI CCGC 4 cut(s) 157, 203, 210, 345
AclWI GGATC 3 cut(s) 160, 280, 293
AcsI RAATTY 1 cut(s) 119
AcuI CTGAAG 2 cut(s) 191, 468
AcyI GRCGYC 1 cut(s) 408
AfaI GTAC 2 cut(s) 59, 92
AfiI CCNNNNNNNGG 4 cut(s) 133, 295, 313, 398
AgsI TTSAA 1 cut(s) 112
AjnI CCWGG 1 cut(s) 281
AjuI GAANNNNNNNTTGG 4 cut(s) 365, 397, 466, 498
AluBI AGCT 4 cut(s) 41, 85, 175, 462
AluI AGCT 4 cut(s) 41, 85, 175, 462
Alw21I GWGCWC 1 cut(s) 87
Alw26I GTCTC 2 cut(s) 68, 415
AlwI GGATC 3 cut(s) 160, 280, 293
Ama87I CYCGRG 4 cut(s) 22, 86, 161, 306
AoxI GGCC 1 cut(s) 279
ApeKI GCWGC 1 cut(s) 342
ApoI RAATTY 1 cut(s) 119
Asp700I GAANNNNTTC 1 cut(s) 260
AspS9I GGNCC 1 cut(s) 279
AsuC2I CCSGG 3 cut(s) 253, 307, 308
AsuHPI GGTGA 3 cut(s) 192, 199, 397
AvaI CYCGRG 4 cut(s) 22, 86, 161, 306
BamHI GGATCC 1 cut(s) 285
BanII GRGCYC 2 cut(s) 87, 313
BauI CACGAG 1 cut(s) 334
BbsI GAAGAC 2 cut(s) 102, 254
Bbv12I GWGCWC 1 cut(s) 87
BbvI GCAGC 1 cut(s) 354
BccI CCATC 2 cut(s) 248, 351
BcgI CGANNNNNNTGC 2 cut(s) 83, 117
BciT130I CCWGG 1 cut(s) 283
BcnI CCSGG 3 cut(s) 253, 307, 308
BcoDI GTCTC 2 cut(s) 68, 415
BisI GCNGC 1 cut(s) 343
BlpI GCTNAGC 1 cut(s) 150
BlsI GCNGC 1 cut(s) 344
Bme1390I CCNGG 4 cut(s) 253, 283, 307, 308
BmeT110I CYCGRG 4 cut(s) 22, 86, 161, 306
BmgT120I GGNCC 1 cut(s) 279
BmiI GGNNCC 1 cut(s) 287
BmrFI CCNGG 4 cut(s) 253, 283, 307, 308
BmsI GCATC 1 cut(s) 378
BpiI GAAGAC 2 cut(s) 102, 254
BpmI CTGGAG 1 cut(s) 110
Bpu1102I GCTNAGC 1 cut(s) 150
BpuMI CCSGG 3 cut(s) 253, 307, 308
BsaBI GATNNNNATC 2 cut(s) 239, 504
BsaHI GRCGYC 1 cut(s) 408
BsaI GGTCTC 1 cut(s) 68
BsaJI CCNNGG 1 cut(s) 306
Bsc4I CCNNNNNNNGG 4 cut(s) 133, 295, 313, 398
Bse3DI GCAATG 1 cut(s) 99
Bse8I GATNNNNATC 2 cut(s) 239, 504
BseBI CCWGG 1 cut(s) 283
BseDI CCNNGG 1 cut(s) 306
BseJI GATNNNNATC 2 cut(s) 239, 504
BseLI CCNNNNNNNGG 4 cut(s) 133, 295, 313, 398
BseMI GCAATG 1 cut(s) 99
BseXI GCAGC 1 cut(s) 354
BshFI GGCC 1 cut(s) 281
BsiHKAI GWGCWC 1 cut(s) 87
BsiHKCI CYCGRG 4 cut(s) 22, 86, 161, 306
BsiSI CCGG 2 cut(s) 252, 307
BslFI GGGAC 1 cut(s) 289
BslI CCNNNNNNNGG 4 cut(s) 133, 295, 313, 398
BsmAI GTCTC 2 cut(s) 68, 415
BsmFI GGGAC 1 cut(s) 289
BsnI GGCC 1 cut(s) 281
Bso31I GGTCTC 1 cut(s) 68
BsoBI CYCGRG 4 cut(s) 22, 86, 161, 306
Bsp1286I GDGCHC 2 cut(s) 87, 313
Bsp143I GATC 4 cut(s) 165, 187, 234, 285
Bsp1720I GCTNAGC 1 cut(s) 150
BspACI CCGC 4 cut(s) 157, 203, 210, 345
BspANI GGCC 1 cut(s) 281
BspLI GGNNCC 1 cut(s) 287
BspPI GGATC 3 cut(s) 160, 280, 293
BspTNI GGTCTC 1 cut(s) 68
BsrBI CCGCTC 2 cut(s) 205, 212
BsrDI GCAATG 1 cut(s) 99
BssECI CCNNGG 1 cut(s) 306
BssMI GATC 4 cut(s) 165, 187, 234, 285
BssNI GRCGYC 1 cut(s) 408
BssSI CACGAG 1 cut(s) 334
Bst2BI CACGAG 1 cut(s) 334
Bst2UI CCWGG 1 cut(s) 283
Bst4CI ACNGT 1 cut(s) 62
Bst6I CTCTTC 3 cut(s) 371, 411, 525
BstACI GRCGYC 1 cut(s) 408
BstC8I GCNNGC 1 cut(s) 177
BstDEI CTNAG 1 cut(s) 150
BstKTI GATC 4 cut(s) 168, 190, 237, 288
BstMAI GTCTC 2 cut(s) 68, 415
BstMBI GATC 4 cut(s) 165, 187, 234, 285
BstMWI GCNNNNNNNGC 2 cut(s) 181, 339
BstNI CCWGG 1 cut(s) 283
BstNSI RCATGY 1 cut(s) 275
BstSCI CCNGG 4 cut(s) 251, 281, 305, 306
BstV1I GCAGC 1 cut(s) 354
BstV2I GAAGAC 2 cut(s) 102, 254
BstX2I RGATCY 2 cut(s) 165, 285
BstYI RGATCY 2 cut(s) 165, 285
BsuRI GGCC 1 cut(s) 281
Cac8I GCNNGC 1 cut(s) 177
Cfr13I GGNCC 1 cut(s) 279
Cfr9I CCCGGG 1 cut(s) 306
CseI GACGC 1 cut(s) 397
Csp6I GTAC 2 cut(s) 58, 91
CviAII CATG 4 cut(s) 15, 133, 272, 553
CviJI RGCY 8 cut(s) 19, 41, 85, 175, 281, 311, 454, 462
CviKI_1 RGCY 8 cut(s) 19, 41, 85, 175, 281, 311, 454, 462
CviQI GTAC 2 cut(s) 58, 91
DdeI CTNAG 1 cut(s) 150
DpnI GATC 4 cut(s) 167, 189, 236, 287
DpnII GATC 4 cut(s) 165, 187, 234, 285
Eam1104I CTCTTC 3 cut(s) 371, 411, 525
EarI CTCTTC 3 cut(s) 371, 411, 525
Ecl136II GAGCTC 1 cut(s) 85
Eco24I GRGCYC 2 cut(s) 87, 313
Eco31I GGTCTC 1 cut(s) 68
Eco53kI GAGCTC 1 cut(s) 85
Eco57I CTGAAG 2 cut(s) 191, 468
Eco88I CYCGRG 4 cut(s) 22, 86, 161, 306
EcoICRI GAGCTC 1 cut(s) 85
EcoO109I RGGNCCY 1 cut(s) 279
EcoRII CCWGG 1 cut(s) 281
EcoT38I GRGCYC 2 cut(s) 87, 313
FaeI CATG 4 cut(s) 18, 136, 275, 556
FaiI YATR 5 cut(s) 16, 134, 273, 492, 554
FaqI GGGAC 1 cut(s) 289
FatI CATG 4 cut(s) 14, 132, 271, 552
FauI CCCGC 1 cut(s) 338
Fnu4HI GCNGC 1 cut(s) 343
FriOI GRGCYC 2 cut(s) 87, 313
Fsp4HI GCNGC 1 cut(s) 343
GluI GCNGC 1 cut(s) 343
GsuI CTGGAG 1 cut(s) 110
HaeIII GGCC 1 cut(s) 281
HapII CCGG 2 cut(s) 252, 307
HgaI GACGC 1 cut(s) 397
Hin1I GRCGYC 1 cut(s) 408
Hin1II CATG 4 cut(s) 18, 136, 275, 556
HincII GTYRAC 1 cut(s) 432
HindII GTYRAC 1 cut(s) 432
HindIII AAGCTT 2 cut(s) 39, 173
HinfI GANTC 4 cut(s) 228, 299, 423, 548
HpaII CCGG 2 cut(s) 252, 307
HphI GGTGA 3 cut(s) 192, 199, 397
Hpy166II GTNNAC 1 cut(s) 432
Hpy188I TCNGA 5 cut(s) 192, 227, 268, 290, 561
Hpy188III TCNNGA 9 cut(s) 22, 24, 35, 127, 163, 169, 232, 244, 327
Hpy8I GTNNAC 1 cut(s) 432
Hpy99I CGWCG 1 cut(s) 294
HpyAV CCTTC 1 cut(s) 207
HpyCH4III ACNGT 1 cut(s) 62
HpyF10VI GCNNNNNNNGC 2 cut(s) 181, 339
HpyF3I CTNAG 1 cut(s) 150
Hsp92I GRCGYC 1 cut(s) 408
Hsp92II CATG 4 cut(s) 18, 136, 275, 556
Kzo9I GATC 4 cut(s) 165, 187, 234, 285
LpnPI CCDG 9 cut(s) 140, 182, 265, 268, 295, 299, 320, 440, 471
Lsp1109I GCAGC 1 cut(s) 354
LweI GCATC 1 cut(s) 378
MaeIII GTNAC 1 cut(s) 395
MalI GATC 4 cut(s) 167, 189, 236, 287
MbiI CCGCTC 2 cut(s) 205, 212
MboI GATC 4 cut(s) 165, 187, 234, 285
MboII GAAGA 9 cut(s) 107, 259, 385, 388, 428, 474, 506, 542, 547
MflI RGATCY 2 cut(s) 165, 285
MhlI GDGCHC 2 cut(s) 87, 313
MluCI AATT 1 cut(s) 119
MlyI GAGTC 2 cut(s) 237, 417
MmeI TCCRAC 1 cut(s) 313
MnlI CCTC 3 cut(s) 170, 289, 363
MroXI GAANNNNTTC 1 cut(s) 260
MseI TTAA 2 cut(s) 540, 567
MspA1I CMGCKG 1 cut(s) 345
MspI CCGG 2 cut(s) 252, 307
MspR9I CCNGG 4 cut(s) 253, 283, 307, 308
MvaI CCWGG 1 cut(s) 283
MwoI GCNNNNNNNGC 2 cut(s) 181, 339
NciI CCSGG 3 cut(s) 253, 307, 308
NdeII GATC 4 cut(s) 165, 187, 234, 285
NlaIII CATG 4 cut(s) 18, 136, 275, 556
NlaIV GGNNCC 1 cut(s) 287
NmeAIII GCCGAG 2 cut(s) 160, 417
NspI RCATGY 1 cut(s) 275
PaeR7I CTCGAG 3 cut(s) 22, 86, 161
PcsI WCGNNNNNNNCGW 2 cut(s) 332, 405
PdmI GAANNNNTTC 1 cut(s) 260
PfeI GAWTC 2 cut(s) 299, 548
PflMI CCANNNNNTGG 1 cut(s) 133
PkrI GCNGC 1 cut(s) 344
PleI GAGTC 2 cut(s) 236, 417
PpsI GAGTC 2 cut(s) 236, 417
Psp124BI GAGCTC 1 cut(s) 87
Psp6I CCWGG 1 cut(s) 281
PspGI CCWGG 1 cut(s) 281
PspN4I GGNNCC 1 cut(s) 287
PspPI GGNCC 1 cut(s) 279
PspXI VCTCGAGB 1 cut(s) 86
PsuI RGATCY 2 cut(s) 165, 285
RsaI GTAC 2 cut(s) 59, 92
RsaNI GTAC 2 cut(s) 58, 91
SacI GAGCTC 1 cut(s) 87
SaqAI TTAA 2 cut(s) 540, 567
SatI GCNGC 1 cut(s) 343
Sau3AI GATC 4 cut(s) 165, 187, 234, 285
Sau96I GGNCC 1 cut(s) 279
SchI GAGTC 2 cut(s) 237, 417
ScrFI CCNGG 4 cut(s) 253, 283, 307, 308
SduI GDGCHC 2 cut(s) 87, 313
SetI ASST 9 cut(s) 43, 87, 177, 199, 464, 480, 490, 567, 574
SfaNI GCATC 1 cut(s) 378
Sfr274I CTCGAG 3 cut(s) 22, 86, 161
SlaI CTCGAG 3 cut(s) 22, 86, 161
SmaI CCCGGG 1 cut(s) 308
SmlI CTYRAG 3 cut(s) 22, 86, 161
SmoI CTYRAG 3 cut(s) 22, 86, 161
Sse9I AATT 1 cut(s) 119
SsiI CCGC 4 cut(s) 157, 203, 210, 345
SstI GAGCTC 1 cut(s) 87
StyD4I CCNGG 4 cut(s) 251, 281, 305, 306
TaaI ACNGT 1 cut(s) 62
TaqI TCGA 7 cut(s) 23, 36, 87, 162, 218, 326, 456
TasI AATT 1 cut(s) 119
TfiI GAWTC 2 cut(s) 299, 548
Tru1I TTAA 2 cut(s) 540, 567
Tru9I TTAA 2 cut(s) 540, 567
TseI GCWGC 1 cut(s) 342
TspDTI ATGAA 1 cut(s) 507
TspGWI ACGGA 1 cut(s) 414
TspMI CCCGGG 1 cut(s) 306
Van91I CCANNNNNTGG 1 cut(s) 133
XapI RAATTY 1 cut(s) 119
XceI RCATGY 1 cut(s) 275
XhoI CTCGAG 3 cut(s) 22, 86, 161
XmaI CCCGGG 1 cut(s) 306
XmnI GAANNNNTTC 1 cut(s) 260
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.