Prupe.3G093400_v2.0.a1

Sterile alpha motif (SAM) domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0014165
Physical Location & Seq
Forward (+)
6998581 .. 6999849
1269 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G093400.1

Sequence Viewer

Length: 600 bp
ATGGATTGGTTTTCATGGCTGTCCAAAACTGGCCTAGAGCCCTCACTTGTTTATGAGTATGGTCTTGCTTTTGCTCACAATGAGCTGGAAGAAGAAGACATAGTCTACTTCAACCATGAGTTTCTTCAAAGCATGGGAATTTCCATAGCCAAACACAGGCTGGAGATCCTCAAGCTTGCTAGAAAAGAAAAGGGAACAAGTCCGCGTCCCATTCGAAAGCTCTTGGTGGCAATCAAGAGGACCAAGAGGTGTTTAGCTGAGTACGTAAGGACGTGGATTCGTCGCGAACAAGACGCATCAGCTCTGGCGCTTGTGACAAGGCCAAGCAATTACAGGTCAAGGTTTAGAGGAGCCATGTTGAAGAGGAACAAGAAGATTATCATTGCCAACAACCAAGGCAGCAGGTTGTTGCTCACAAATGGTAGCCCAGTGGTGGTTTCAGGGCCTCATGTCGATAGCTTTTCGAGTCCTGTGGTTTATGATCTTCAAAAGGAAGGAAAGATGGACGGTGATGATCAATATAATGATGATGGTTATTGGTCGACTGGGGTTGAAGAGATCAGGTGGGATACTATGTTCCAGGACTTGAAACCCACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SAM_2

Protein Analysis

200

Amino Acids

23.0

Weight (kDa)

9.1

Isoelectric Point (pI)

47.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014165)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G15760 AT1G80520
fragaria_vesca FvH4_6g29130
malus_domestica MD00G1182100.v1.1 MD17G1217700.v1.1
prunus_persica Prupe.3G093400_v2.0.a1
pyrus_communis pycom17g22200
rosa_chinensis RchiOBHm_Chr2g0134301
rosa_laevigata RLG00000019385
rosa_multiflora Rmu_sc0014586.1_g000006
rosa_roxburghii Rroxscaffold_2G00110350
rosa_rugosa Rorug02G0316000
rosa_samantha Rh2AG368700 Rh2BG374700 Rh2CG352400 Rh2DG392000
rosa_wichuraiana Rw2G030040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 393
AccI GTMKAC 2 cut(s) 105, 542
AccII CGCG 2 cut(s) 205, 285
AciI CCGC 1 cut(s) 203
AclWI GGATC 1 cut(s) 160
AcsI RAATTY 1 cut(s) 138
AfaI GTAC 1 cut(s) 263
AfiI CCNNNNNNNGG 2 cut(s) 156, 433
AgsI TTSAA 6 cut(s) 112, 128, 361, 488, 554, 589
AjiI CACGTC 1 cut(s) 273
AjnI CCWGG 1 cut(s) 579
AloI GAACNNNNNNTCC 2 cut(s) 560, 592
AluBI AGCT 6 cut(s) 85, 175, 220, 257, 302, 459
AluI AGCT 6 cut(s) 85, 175, 220, 257, 302, 459
AlwI GGATC 1 cut(s) 160
AoxI GGCC 3 cut(s) 31, 320, 443
ApeKI GCWGC 1 cut(s) 399
ApoI RAATTY 1 cut(s) 138
AspLEI GCGC 1 cut(s) 310
AspS9I GGNCC 2 cut(s) 240, 443
AsuHPI GGTGA 1 cut(s) 521
AsuII TTCGAA 1 cut(s) 214
AvaII GGWCC 1 cut(s) 240
BanII GRGCYC 1 cut(s) 42
BbsI GAAGAC 1 cut(s) 102
BbvI GCAGC 1 cut(s) 411
BccI CCATC 2 cut(s) 496, 524
BciT130I CCWGG 1 cut(s) 581
BciVI GTATCC 1 cut(s) 562
BclI TGATCA 1 cut(s) 514
BfaI CTAG 2 cut(s) 35, 180
BfoI RGCGCY 1 cut(s) 311
BfuAI ACCTGC 1 cut(s) 393
BfuI GTATCC 1 cut(s) 562
BisI GCNGC 1 cut(s) 400
BlsI GCNGC 1 cut(s) 401
Bme1390I CCNGG 1 cut(s) 581
Bme18I GGWCC 1 cut(s) 240
BmgBI CACGTC 1 cut(s) 273
BmgT120I GGNCC 2 cut(s) 240, 443
BmiI GGNNCC 1 cut(s) 352
BmrFI CCNGG 1 cut(s) 581
BmrI ACTGGG 2 cut(s) 422, 555
BmsI GCATC 1 cut(s) 305
BmuI ACTGGG 2 cut(s) 422, 555
BpiI GAAGAC 1 cut(s) 102
BpmI CTGGAG 1 cut(s) 182
Bpu14I TTCGAA 1 cut(s) 214
BpuEI CTTGAG 1 cut(s) 155
BsaAI YACGTR 1 cut(s) 265
BsaJI CCNNGG 1 cut(s) 394
Bsc4I CCNNNNNNNGG 2 cut(s) 156, 433
Bse1I ACTGG 3 cut(s) 34, 428, 550
Bse3DI GCAATG 1 cut(s) 381
BseBI CCWGG 1 cut(s) 581
BseDI CCNNGG 1 cut(s) 394
BseLI CCNNNNNNNGG 2 cut(s) 156, 433
BseMI GCAATG 1 cut(s) 381
BseMII CTCAG 1 cut(s) 249
BseNI ACTGG 3 cut(s) 34, 428, 550
BseRI GAGGAG 1 cut(s) 363
BseXI GCAGC 1 cut(s) 411
Bsh1236I CGCG 2 cut(s) 205, 285
BshFI GGCC 3 cut(s) 33, 322, 445
BslFI GGGAC 1 cut(s) 192
BslI CCNNNNNNNGG 2 cut(s) 156, 433
BsmFI GGGAC 1 cut(s) 192
BsnI GGCC 3 cut(s) 33, 322, 445
Bsp119I TTCGAA 1 cut(s) 214
Bsp1286I GDGCHC 1 cut(s) 42
Bsp143I GATC 4 cut(s) 165, 481, 514, 558
Bsp68I TCGCGA 1 cut(s) 285
BspACI CCGC 1 cut(s) 203
BspANI GGCC 3 cut(s) 33, 322, 445
BspCNI CTCAG 1 cut(s) 250
BspFNI CGCG 2 cut(s) 205, 285
BspLI GGNNCC 1 cut(s) 352
BspMI ACCTGC 1 cut(s) 393
BspPI GGATC 1 cut(s) 160
BspT104I TTCGAA 1 cut(s) 214
BsrDI GCAATG 1 cut(s) 381
BsrI ACTGG 3 cut(s) 34, 428, 550
BssECI CCNNGG 1 cut(s) 394
BssMI GATC 4 cut(s) 165, 481, 514, 558
BssT1I CCWWGG 1 cut(s) 394
Bst2UI CCWGG 1 cut(s) 581
Bst4CI ACNGT 1 cut(s) 509
Bst6I CTCTTC 2 cut(s) 356, 549
BstBAI YACGTR 1 cut(s) 265
BstBI TTCGAA 1 cut(s) 214
BstC8I GCNNGC 1 cut(s) 177
BstDEI CTNAG 1 cut(s) 258
BstFNI CGCG 2 cut(s) 205, 285
BstH2I RGCGCY 1 cut(s) 311
BstHHI GCGC 1 cut(s) 310
BstKTI GATC 4 cut(s) 168, 484, 517, 561
BstMBI GATC 4 cut(s) 165, 481, 514, 558
BstNI CCWGG 1 cut(s) 581
BstSCI CCNGG 1 cut(s) 579
BstSNI TACGTA 1 cut(s) 265
BstUI CGCG 2 cut(s) 205, 285
BstV1I GCAGC 1 cut(s) 411
BstV2I GAAGAC 1 cut(s) 102
BstX2I RGATCY 1 cut(s) 165
BstYI RGATCY 1 cut(s) 165
BsuI GTATCC 1 cut(s) 562
BsuRI GGCC 3 cut(s) 33, 322, 445
BtrI CACGTC 1 cut(s) 273
BtsIMutI CAGTG 1 cut(s) 435
BtuMI TCGCGA 1 cut(s) 285
BveI ACCTGC 1 cut(s) 393
Cac8I GCNNGC 1 cut(s) 177
CfoI GCGC 1 cut(s) 310
Cfr13I GGNCC 2 cut(s) 240, 443
CseI GACGC 2 cut(s) 194, 302
Csp6I GTAC 1 cut(s) 262
CviAII CATG 6 cut(s) 15, 116, 133, 355, 449, 597
CviQI GTAC 1 cut(s) 262
DdeI CTNAG 1 cut(s) 258
DpnI GATC 4 cut(s) 167, 483, 516, 560
DpnII GATC 4 cut(s) 165, 481, 514, 558
Eam1104I CTCTTC 2 cut(s) 356, 549
EarI CTCTTC 2 cut(s) 356, 549
Eco105I TACGTA 1 cut(s) 265
Eco130I CCWWGG 1 cut(s) 394
Eco24I GRGCYC 1 cut(s) 42
Eco47I GGWCC 1 cut(s) 240
EcoO109I RGGNCCY 1 cut(s) 443
EcoRII CCWGG 1 cut(s) 579
EcoT14I CCWWGG 1 cut(s) 394
EcoT38I GRGCYC 1 cut(s) 42
ErhI CCWWGG 1 cut(s) 394
FaeI CATG 6 cut(s) 18, 119, 136, 358, 452, 600
FaqI GGGAC 1 cut(s) 192
FatI CATG 6 cut(s) 14, 115, 132, 354, 448, 596
FbaI TGATCA 1 cut(s) 514
FblI GTMKAC 2 cut(s) 105, 542
Fnu4HI GCNGC 1 cut(s) 400
FriOI GRGCYC 1 cut(s) 42
Fsp4HI GCNGC 1 cut(s) 400
FspBI CTAG 2 cut(s) 35, 180
GlaI GCGC 1 cut(s) 309
GluI GCNGC 1 cut(s) 400
GsuI CTGGAG 1 cut(s) 182
HaeII RGCGCY 1 cut(s) 311
HaeIII GGCC 3 cut(s) 33, 322, 445
HgaI GACGC 2 cut(s) 194, 302
HhaI GCGC 1 cut(s) 310
Hin1II CATG 6 cut(s) 18, 119, 136, 358, 452, 600
Hin6I GCGC 1 cut(s) 308
HinP1I GCGC 1 cut(s) 308
HincII GTYRAC 1 cut(s) 543
HindII GTYRAC 1 cut(s) 543
HindIII AAGCTT 1 cut(s) 173
HinfI GANTC 2 cut(s) 277, 466
HphI GGTGA 1 cut(s) 521
Hpy166II GTNNAC 2 cut(s) 106, 543
Hpy188III TCNNGA 2 cut(s) 235, 284
Hpy8I GTNNAC 2 cut(s) 106, 543
Hpy99I CGWCG 1 cut(s) 285
HpyAV CCTTC 1 cut(s) 488
HpyCH4III ACNGT 1 cut(s) 509
HpyCH4IV ACGT 2 cut(s) 264, 272
HpyF3I CTNAG 1 cut(s) 258
HpySE526I ACGT 2 cut(s) 264, 272
Hsp92II CATG 6 cut(s) 18, 119, 136, 358, 452, 600
HspAI GCGC 1 cut(s) 308
Ksp22I TGATCA 1 cut(s) 514
Kzo9I GATC 4 cut(s) 165, 481, 514, 558
LmnI GCTCC 1 cut(s) 350
Lsp1109I GCAGC 1 cut(s) 411
LweI GCATC 1 cut(s) 305
MaeI CTAG 2 cut(s) 35, 180
MaeII ACGT 2 cut(s) 264, 272
MaeIII GTNAC 1 cut(s) 313
MalI GATC 4 cut(s) 167, 483, 516, 560
MboI GATC 4 cut(s) 165, 481, 514, 558
MboII GAAGA 8 cut(s) 101, 104, 107, 116, 373, 385, 476, 566
MflI RGATCY 1 cut(s) 165
MhlI GDGCHC 1 cut(s) 42
MluCI AATT 2 cut(s) 138, 328
MlyI GAGTC 1 cut(s) 475
MnlI CCTC 7 cut(s) 52, 179, 231, 240, 341, 357, 456
MspR9I CCNGG 1 cut(s) 581
MvaI CCWGG 1 cut(s) 581
MvnI CGCG 2 cut(s) 205, 285
NdeII GATC 4 cut(s) 165, 481, 514, 558
NlaIII CATG 6 cut(s) 18, 119, 136, 358, 452, 600
NlaIV GGNNCC 1 cut(s) 352
NmuCI GTSAC 1 cut(s) 313
NruI TCGCGA 1 cut(s) 285
NspV TTCGAA 1 cut(s) 214
PfeI GAWTC 1 cut(s) 277
PflFI GACNNNGTC 1 cut(s) 101
PfoI TCCNGGA 1 cut(s) 579
PkrI GCNGC 1 cut(s) 401
PleI GAGTC 1 cut(s) 474
PpsI GAGTC 1 cut(s) 474
Ppu21I YACGTR 1 cut(s) 265
Psp6I CCWGG 1 cut(s) 579
PspGI CCWGG 1 cut(s) 579
PspN4I GGNNCC 1 cut(s) 352
PspPI GGNCC 2 cut(s) 240, 443
PsuI RGATCY 1 cut(s) 165
PsyI GACNNNGTC 1 cut(s) 101
RruI TCGCGA 1 cut(s) 285
RsaI GTAC 1 cut(s) 263
RsaNI GTAC 1 cut(s) 262
SalI GTCGAC 1 cut(s) 541
SatI GCNGC 1 cut(s) 400
Sau3AI GATC 4 cut(s) 165, 481, 514, 558
Sau96I GGNCC 2 cut(s) 240, 443
SchI GAGTC 1 cut(s) 475
ScrFI CCNGG 1 cut(s) 581
SduI GDGCHC 1 cut(s) 42
SfaNI GCATC 1 cut(s) 305
SfuI TTCGAA 1 cut(s) 214
SinI GGWCC 1 cut(s) 240
SmlI CTYRAG 1 cut(s) 170
SmoI CTYRAG 1 cut(s) 170
SnaBI TACGTA 1 cut(s) 265
Sse9I AATT 2 cut(s) 138, 328
SsiI CCGC 1 cut(s) 203
SspMI CTAG 2 cut(s) 35, 180
StyD4I CCNGG 1 cut(s) 579
StyI CCWWGG 1 cut(s) 394
TaaI ACNGT 1 cut(s) 509
TaiI ACGT 2 cut(s) 267, 275
TaqI TCGA 4 cut(s) 214, 453, 464, 542
TasI AATT 2 cut(s) 138, 328
TfiI GAWTC 1 cut(s) 277
TscAI CASTG 1 cut(s) 435
TseFI GTSAC 1 cut(s) 313
TseI GCWGC 1 cut(s) 399
Tsp45I GTSAC 1 cut(s) 313
TspRI CASTG 1 cut(s) 435
Tth111I GACNNNGTC 1 cut(s) 101
VpaK11BI GGWCC 1 cut(s) 240
XapI RAATTY 1 cut(s) 138
XcmI CCANNNNNNNNNTGG 1 cut(s) 157
XmiI GTMKAC 2 cut(s) 105, 542
XspI CTAG 2 cut(s) 35, 180
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.